mRNA_S-dermatodea_contig83515.16531.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83515.16531.1
Unique NamemRNA_S-dermatodea_contig83515.16531.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5KB94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB94_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.360e-22
Identity = 66/168 (39.29%), Postives = 92/168 (54.76%), Query Frame = 1
Query:   64 NSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAG----GAHDLYSFKIEL--EP---------PDVGLHVKVSGTSDEWHRRM 522
            +S+ ++VDSGA+++Y D  L PGLR  + D   L+VP TI  AG H LKGVATG +   + D  G  + V    ++VPGLG NL SV  A  +GV T F   +  +E+   V P+Q  G        +YS +++L  EP         PD  L +KV  ++D W RRM
Sbjct:  243 SSIQMVVDSGATDNYLDPGLTPGLRAHMRDVERLRVPHTIVAAGQHVLKGVATGTIFGAVTDDNGNDRHVSFRGILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESRDVVFPMQTLGLDATTGKRIYSIEVKLGGEPGGPTVLGDAPDA-LALKVE-SADLWFRRM 408          
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.900e-21
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   76 VLVDSGASEHYFDDLLAPGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAG 420
            ++VDSGA+++Y D  L PGLR  + D   L+VP TI  AG H LKGVATG +   + D  G  + V   +++VPGLG NL SV  A  +GV T F   +  +E+G  V P+Q  G
Sbjct:  236 MVVDSGATDNYLDPGLTPGLRTHMRDVEYLRVPHTIVAAGQHVLKGVATGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLG 350          
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.210e-17
Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  127 PGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAG----GAHDLYSFKIEL-----------EPPDVGLHVKVSGTSDEWHRRM 522
            PGLR  + D   L+VP TI  AG H LKGVATG     + D  G  + V   +++VPGL  NL SV  A  +G  T     D  +E+G  VIP+Q  G        +YS +++L           + PD  L +KV  ++D WHRRM
Sbjct:  452 PGLRAHMRDVEHLRVPHTIVAAGQHVLKGVATGTFFGAVTDDNGTDRHVSFCVILVPGLSTNLFSVTLAMLKGEATLVHPDDPRLESGDVVIPMQTLGVDTTTGKRIYSIEVKLGGEAGGPMVLEDAPDA-LALKVE-SADLWHRRM 596          
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.050e-16
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   61 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTF 360
            G+S+ ++VDSGA++ Y    L PGLR  + D   L+VP TI  AG H LKGVATG +   + D  G  + V   +++VPGLG NL SV  A  +G  T F
Sbjct:  249 GSSIRMVVDSGATDKYLHPWLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVATGTIFGAVRDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGAATLF 348          
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5KDX9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.380e-13
Identity = 62/202 (30.69%), Postives = 95/202 (47.03%), Query Frame = 1
Query:    4 HTALTAGIKNVVNNHSIITGNSLPVLVDSGASEHY--FDDLLAPGLRDKLSDYTILQVPRTIT------------TAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAG----GAHDLYSFKIEL--EP---------PDVGLHVKVSGTSDEWHRRM 522
            HT + AG ++V+    + TG  +  + D   +E +  F  +L PG    L   T+  +    T             AG H LKGVATG +   + D  G ++ V   +++VPG G NL SV  A  +GV T F   ++ +++G  V P+Q  G        +YS +++L  EP         PD  L +KV  ++D WHR M
Sbjct:  254 HTIVAAG-QHVLK--GVATGTIVGAVTDDNGNERHVLFRVILVPGPGTNLFSVTLAMLKGVATLFHPDNTRLDXVAAGQHVLKGVATGTIVGAVTDDNGNERHVLFRVILVPGPGTNLFSVTLAMLKGVATLFHPDNTRLDSGDVVFPMQTLGVDATTGKRIYSIEVKLGREPGGPTVLGDAPDA-LALKVE-SADLWHRHM 450          
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5JV98_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV98_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.450e-10
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   76 VLVDSGASEHYFDDLLAPGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKG----VKQAVGLPIVVVPGLGRNLLSVPAATARGV 348
            +L+D+GASE   +D   PGL++ + +Y  L  P  ++  G+HE+ G+ATG++   + DS G     KQA     +VVPGLGRN+ S  A    GV
Sbjct:  298 LLIDTGASEKVLNDRFIPGLKETVWEYKNLAKPMAVSVGGDHEVDGIATGLIRCIVKDSNGDSDCEKQAALQRGLVVPGLGRNVFSPTAQIQNGV 392          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KB94_9PHAE3.360e-2239.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWN9_9PHAE1.900e-2144.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JC75_9PHAE1.210e-1738.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE1.050e-1645.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX9_9PHAE7.380e-1330.69CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JV98_9PHAE1.450e-1040.00Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83515contigS-dermatodea_contig83515:206..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.6762445-CDS-S-dermatodea_contig83515:205..7271622925337.6762445-CDS-S-dermatodea_contig83515:205..727Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83515 206..727 +
1694079865.071647-CDS-S-dermatodea_contig83515:205..7271694079865.071647-CDS-S-dermatodea_contig83515:205..727Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83515 206..727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83515.16531.1prot_S-dermatodea_contig83515.16531.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83515 206..727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83515.16531.1

>prot_S-dermatodea_contig83515.16531.1 ID=prot_S-dermatodea_contig83515.16531.1|Name=mRNA_S-dermatodea_contig83515.16531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=174bp
EHTALTAGIKNVVNNHSIITGNSLPVLVDSGASEHYFDDLLAPGLRDKLS
DYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPG
LGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAGGAHDLYSFKI
ELEPPDVGLHVKVSGTSDEWHRRM
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mRNA from alignment at S-dermatodea_contig83515:206..727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83515.16531.1 ID=mRNA_S-dermatodea_contig83515.16531.1|Name=mRNA_S-dermatodea_contig83515.16531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig83515:206..727+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCACACAGCTCTGACGGCGGGAATCAAGAACGTCGTCAACAACCACTC CATCATCACCGGCAATTCTCTGCCGGTACTTGTGGACAGCGGGGCGTCAG AGCACTACTTTGACGATCTGCTGGCTCCTGGACTCCGGGACAAGTTGTCA GACTACACAATCCTACAGGTTCCACGAACGATCACCACTGCGGGCAACCA CGAGCTAAAGGGCGTCGCCACCGGCATCCTCAGCGAAACCATCGTCGATT CAAAGGGTGTGAAGCAGGCCGTTGGCCTCCCGATTGTAGTTGTGCCTGGC CTTGGGCGCAATCTATTATCGGTCCCGGCGGCGACTGCGCGAGGCGTCAT CACTACGTTCGCGCAACAAGATTCGTGGATCGAGACAGGTAGCTTCGTCA TCCCTTTGCAGCAAGCTGGAGGGGCCCACGACCTCTACTCGTTCAAGATC GAGTTGGAGCCCCCCGACGTTGGGCTGCACGTGAAGGTGAGCGGTACATC CGACGAGTGGCACCGCCGCATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig83515:206..727+

>mRNA_S-dermatodea_contig83515.16531.1 ID=mRNA_S-dermatodea_contig83515.16531.1|Name=mRNA_S-dermatodea_contig83515.16531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at S-dermatodea_contig83515:206..727+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCACACAGCTCTGACGGCGGGAATCAAGAACGTCGTCAACAACCACTC
CATCATCACCGGCAATTCTCTGCCGGTACTTGTGGACAGCGGGGCGTCAG
AGCACTACTTTGACGATCTGCTGGCTCCTGGACTCCGGGACAAGTTGTCA
GACTACACAATCCTACAGGTTCCACGAACGATCACCACTGCGGGCAACCA
CGAGCTAAAGGGCGTCGCCACCGGCATCCTCAGCGAAACCATCGTCGATT
CAAAGGGTGTGAAGCAGGCCGTTGGCCTCCCGATTGTAGTTGTGCCTGGC
CTTGGGCGCAATCTATTATCGGTCCCGGCGGCGACTGCGCGAGGCGTCAT
CACTACGTTCGCGCAACAAGATTCGTGGATCGAGACAGGTAGCTTCGTCA
TCCCTTTGCAGCAAGCTGGAGGGGCCCACGACCTCTACTCGTTCAAGATC
GAGTTGGAGCCCCCCGACGTTGGGCTGCACGTGAAGGTGAGCGGTACATC
CGACGAGTGGCACCGCCGCATGGAGCACACAGCTCTGACGGCGGGAATCA
AGAACGTCGTCAACAACCACTCCATCATCACCGGCAATTCTCTGCCGGTA
CTTGTGGACAGCGGGGCGTCAGAGCACTACTTTGACGATCTGCTGGCTCC
TGGACTCCGGGACAAGTTGTCAGACTACACAATCCTACAGGTTCCACGAA
CGATCACCACTGCGGGCAACCACGAGCTAAAGGGCGTCGCCACCGGCATC
CTCAGCGAAACCATCGTCGATTCAAAGGGTGTGAAGCAGGCCGTTGGCCT
CCCGATTGTAGTTGTGCCTGGCCTTGGGCGCAATCTATTATCGGTCCCGG
CGGCGACTGCGCGAGGCGTCATCACTACGTTCGCGCAACAAGATTCGTGG
ATCGAGACAGGTAGCTTCGTCATCCCTTTGCAGCAAGCTGGAGGGGCCCA
CGACCTCTACTCGTTCAAGATCGAGTTGGAGCCCCCCGACGTTGGGCTGC
ACGTGAAGGTGAGCGGTACATCCGACGAGTGGCACCGCCGCATG
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