prot_S-dermatodea_contig8349.16529.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig8349.16529.1
Unique Name	prot_S-dermatodea_contig8349.16529.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	499

Homology

[Close]

BLAST of mRNA_S-dermatodea_contig8349.16529.1 vs. uniprot
Match: A0A6H5K6S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S9_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 1.580e-104
Identity = 236/517 (45.65%), Postives = 291/517 (56.29%), Query Frame = 0

Query:    5 RSRKTRSFPTSAKAPACLVAGLLMG-STRSANGLIPSAAVGTASFGKPGFSLMGREHGQRRGVRG--------MRPSMSGGGGSGAEEMDSSELYANLRERLQELRHVGSRGNEEEIDXXXXXXXXXXXXDLRRSDLDRTSRSSSDAGPKGGGATGAAGSKTYSGEEMKKAYYEAFWRARNLHKETKFE--EGSKDDXXXXXXXXXXXXXXXXXXXXKAELAGRSTLLTPGAMDLIMTRLTTGAVPPPTPA----------VQGLTQMYFLEXXXXXXXXXXXXXXXXXXXXXXGGEAVIVPRAPPRRAQRAFA-----FDGSDASSEAEEVAGIAAPQGMSQMFFLDVAEEEEAAAALPVVVGRSFLSEALGVPGEVVQDLRQVELDHARLAMLAVLLTGAVGAGAGVPAGANFVDAHAGFSALADVARTPWLDPCVAGVILSVKALSEGDWRLGKGALAGWADQALRTVSESGAKVLRLSSGDEMRRLALDIEVKHGRMALGAVVCAMAQQGLVT 495
            R+R+  + P S   PACLV GLL+G S R+    +P+   G +S       L+ R     RG R         MR S +GG G GA ++DSSELYA++R RL+ELR   S  ++                  +                          +K YS +EMK+ YYEAFWRARNLH+E KFE   G++DD                    +AE   R+T+L+  AM++ ++R   GA                 VQGLTQMY LE                         A      P R+ Q A       F   D ++EAE +   A PQG++Q+FFLD  +E  AAAALPVV  RSFL E LGVPGE+VQDLRQVELDHARLAMLAVLL+G VGAG     G   ++AH GFSALADVARTPWLDP VAG IL+ KALSEGDWR+GKGA+AG AD+AL  VS +GAKVLRL SG+E+RRLA+++EVKHGRMALGAVVCAMAQQGL+T
Sbjct:    3 RNRRPSTTPPSGAGPACLVVGLLLGRSGRAVQAFVPTHHRGVSS-------LLTRPFAPARGGRALVRPRAGDMRLSATGGSG-GAGDIDSSELYADMRRRLEELRQSSSSRSDTGFSPIEDDVSDPGLFQQQNXXXXXXXX--------------XXXAKAYSAQEMKQRYYEAFWRARNLHREAKFEASSGAEDDYSSDTPAPPATPPP------EAEAGSRTTILSHMAMNMFLSR---GAXXXXXXXXXXXXXXXSDVQGLTQMYHLELEEEEGVLASTAV----------AAAATAEALPVRQPQHAAVSTEAVFAAPDVAAEAESMIPTAQPQGLTQVFFLDPEDEALAAAALPVVPERSFLRERLGVPGELVQDLRQVELDHARLAMLAVLLSGVVGAGXXXXXGV-LLNAHDGFSALADVARTPWLDPYVAGGILAAKALSEGDWRVGKGAMAGLADRALNAVSNTGAKVLRLGSGNELRRLAVEVEVKHGRMALGAVVCAMAQQGLLT 477

[Close]

BLAST of mRNA_S-dermatodea_contig8349.16529.1 vs. uniprot
Match: D8LGH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH2_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 2.100e-87
Identity = 230/470 (48.94%), Postives = 275/470 (58.51%), Query Frame = 0

Query:    5 RSRKTRSFPTSAKAPACLVAGLLMG-STRSANGLIPSAAVGTASFGKPGFSLMGREHGQRRGVRGMRPSMSGGGGSGAEEMDSSELYANLRERLQELRHVGSRGNEEEIDXXXXXXXXXXXXDLRRSDLDRTSRSSSDAGPKGGGATGAAGSKTYSGEEMKKAYYEAFWRARNLHKETKFE--EGSKDDXXXXXXXXXXXXXXXXXXXXKAELAGRSTLLTPGAMDLIMTRLTTGAVPPP------TPAVQGLTQMYFLEXXXXXXXXXXXXXXXXXXXXXXGGEAVIVPRAPPRRAQRAFA-FDGSDASSEAEEVAGIAAPQGMSQMFFLDVAEEEEAAAALPVVVGRSFLSEALGVPGEVVQDLRQVELDHARLAMLAVLLTGAVGAGAGVPAGANFVDAHAGFSALADVARTPWLDPCVAGVILSVKALSEGDWRLGKGALAGWADQALRTVSESGAKVLRLSSGDE 464
            RSR   + P+ A  PACLV GLL+  S RS    +P+   G +S   P     G     R     MR S +GG G GA ++DSSELYA++R RL+ELR   S  ++  +                 SDL    +                 +K YS +EMK+ YYEAFWRARNLHKE KFE   G +DD                    +AE   R+T+L+  AMD+ ++R               +  VQGLTQMY+LE   XXXXXXXXXXXXXX       E + V R P   A  A A F  SD ++ AE +   A PQG++Q+FFLD  +E  AAAALPVV GRSFL E LGVPGEVVQDLRQVELDHARLAMLAVLL+GAVGA          + AH GFSALADVARTPWLDP VAG IL+ KALSEGDWR+GKGA+AGWAD+AL  VS +GAKVLRL SG+E
Sbjct:    3 RSRWPNTTPSGA-GPACLVLGLLLSRSGRSVQAFVPAHHRGVSSLTPPSAPARGGRALVRPRAGDMRLSATGGSG-GAGDIDSSELYADMRRRLEELRQSSSSSSDTGLSPIEDDV----------SDLGLFQQXXXXXXX----XXXXXXAKAYSAQEMKQRYYEAFWRARNLHKEAKFEGSSGIEDDYSSDTPAPPATPPP------EAEAGSRTTILSHMAMDMFLSRGAAAEADDXXXXXXXSSDVQGLTQMYYLELEEXXXXXXXXXXXXXXT----AAEPLPV-RQPQHAAVGAEAVFAASDVAAAAESMIPTAEPQGLTQVFFLDPKDEALAAAALPVVPGRSFLRERLGVPGEVVQDLRQVELDHARLAMLAVLLSGAVGAXXXXXXXV-LLKAHDGFSALADVARTPWLDPYVAGGILAAKALSEGDWRIGKGAMAGWADRALSAVSNTGAKVLRLGSGNE 444

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig8349.16529.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig8349.16529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K6S9_9PHAE	1.580e-104	45.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LGH2_ECTSI	2.100e-87	48.94	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 342..498 e-value: 6.7E-10 score: 41.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 350..491 e-value: 8.8E-9 score: 36.1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 18..28
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..498
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 29..33
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 357..495

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig8349	contig	S-dermatodea_contig8349:1175..6329 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig8349.16529.1	mRNA_S-dermatodea_contig8349.16529.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig8349 939..7420 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig8349.16529.1 ID=prot_S-dermatodea_contig8349.16529.1|Name=mRNA_S-dermatodea_contig8349.16529.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=499bp
MTTSRSRKTRSFPTSAKAPACLVAGLLMGSTRSANGLIPSAAVGTASFGK
PGFSLMGREHGQRRGVRGMRPSMSGGGGSGAEEMDSSELYANLRERLQEL
RHVGSRGNEEEIDDAAAAAAAAAAADLRRSDLDRTSRSSSDAGPKGGGAT
GAAGSKTYSGEEMKKAYYEAFWRARNLHKETKFEEGSKDDSSTSPSASSS
PSSDAAPPPPKAELAGRSTLLTPGAMDLIMTRLTTGAVPPPTPAVQGLTQ
MYFLEEEEEEENENVFVASAAAAAASVGGEAVIVPRAPPRRAQRAFAFDG
SDASSEAEEVAGIAAPQGMSQMFFLDVAEEEEAAAALPVVVGRSFLSEAL
GVPGEVVQDLRQVELDHARLAMLAVLLTGAVGAGAGVPAGANFVDAHAGF
SALADVARTPWLDPCVAGVILSVKALSEGDWRLGKGALAGWADQALRTVS
ESGAKVLRLSSGDEMRRLALDIEVKHGRMALGAVVCAMAQQGLVTVGA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind