mRNA_S-dermatodea_contig8348.16528.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8348.16528.1
Unique NamemRNA_S-dermatodea_contig8348.16528.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8348.16528.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 6.110e-34
Identity = 64/87 (73.56%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 PCAAAAAHTQPLQGSGVTGRVARGILRIADWHEEGVLGRDEFFLAMYLCRRQHLGEGVPSMLEAWMIPPRLRETRGCQDNSPSPAYP 261
            PC  A    +PLQGSGV  R+AR IL+IADW   G LG DEF LAMYLCRRQ LGEGVPSMLEAWMIPP LRE RGC+DN PSPAYP
Sbjct:  337 PCLVA---REPLQGSGVNVRMARAILQIADWQHRGDLGLDEFSLAMYLCRRQRLGEGVPSMLEAWMIPPSLREARGCRDNGPSPAYP 420
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8348.16528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS12_9PHAE6.110e-3473.56EH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8348contigS-dermatodea_contig8348:4068..5780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size332
Cds size138
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8348.16528.1prot_S-dermatodea_contig8348.16528.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8348 4127..5645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.2142937-UTR-S-dermatodea_contig8348:4067..41261622925337.2142937-UTR-S-dermatodea_contig8348:4067..4126Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8348 4068..4126 -
1694079864.6796677-UTR-S-dermatodea_contig8348:4067..41261694079864.6796677-UTR-S-dermatodea_contig8348:4067..4126Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8348 4068..4126 -
1622925337.246792-UTR-S-dermatodea_contig8348:5645..57801622925337.246792-UTR-S-dermatodea_contig8348:5645..5780Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8348 5646..5780 -
1694079864.7145097-UTR-S-dermatodea_contig8348:5645..57801694079864.7145097-UTR-S-dermatodea_contig8348:5645..5780Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8348 5646..5780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.2247322-CDS-S-dermatodea_contig8348:4126..42621622925337.2247322-CDS-S-dermatodea_contig8348:4126..4262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8348 4127..4262 -
1694079864.6890197-CDS-S-dermatodea_contig8348:4126..42621694079864.6890197-CDS-S-dermatodea_contig8348:4126..4262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8348 4127..4262 -
1622925337.234446-CDS-S-dermatodea_contig8348:5643..56451622925337.234446-CDS-S-dermatodea_contig8348:5643..5645Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8348 5644..5645 -
1694079864.701139-CDS-S-dermatodea_contig8348:5643..56451694079864.701139-CDS-S-dermatodea_contig8348:5643..5645Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8348 5644..5645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8348.16528.1

>prot_S-dermatodea_contig8348.16528.1 ID=prot_S-dermatodea_contig8348.16528.1|Name=mRNA_S-dermatodea_contig8348.16528.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
MYLCRRQHLGEGVPSMLEAWMIPPRLRETRGCQDNSPSPAYPPRS*
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mRNA from alignment at S-dermatodea_contig8348:4068..5780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8348.16528.1 ID=mRNA_S-dermatodea_contig8348.16528.1|Name=mRNA_S-dermatodea_contig8348.16528.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1713bp|location=Sequence derived from alignment at S-dermatodea_contig8348:4068..5780- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTGCGCTGCTGCTGCTGCCCACACACAGCCTCTCCAAGGCTCCGGGGT
GACAGGTCGCGTTGCCAGGGGCATCCTGCGGATAGCCGATTGGCACGAAG
AGGGCGTCCTGGGACGTGACGAGTTCTTCCTGGCGATGTGAGTCAGACCC
GGGGGGCGCGCGGTAGCAGCGTTTACGACGTCTTCCTCGAGCCGAGCAGT
GGCACCCGTTTTTGGCGTTTGTGGCGATTCGCTCCTTTTTATTCTTTGAA
ATGTTCCATTTTTCCCGTAGAAGTAAATGCTAGTATCCTTATTAATTAAC
ACAAGAGTCAACCATTTTTTTACACTACAATAAAGCGCAGGCGATGCCTA
AATTACATACGATTTTACTTTTTTATTTTTTTTCCGGATTGGGTATACTA
AATCCGAAACGATTTAACATTTTCATCGTCCTGCCAACGCACACCTCACG
GGCGCCAGCCGTGGCTTGCAACTAGTATAAAATAAAATACAAGAACAGAT
TAGTTGGTTAACTAATTAAGTACTTAATACAGCGGTACTACCGCTTTGTC
CGTTTTTTAATAGCTAATTTGGAATGACACAATATGCCCACGCTATTTCC
TGTGCGTTTTGGGTAACACAAATCACAGCGATTTTGAACTGTGACCCATG
CCCACGCTATTTCCTACACGTTCTGCGTAACACGAATCGTATGCGATTTC
ATAGAGGCCTACATTGATGCCAAACAACTTGATTTTAGAGAACGCTCGCT
CAAGTGTTGAAAAGAGTAGGATTTTTCGCCTCACGGACGTAGCCGTCGCT
TTTAATACCTACTATTAATAGTACAATACAATTCCGCACGTTTTCGAGTT
GTGTGTGTGTCGGGCGGCGCCGGGGGGGGTGGTATTGTACCTGGACCCCA
TAGCATCACATATATCGTACCGTAGGCTTTCACTGAGTTAGCTTGGGCCA
TATTTTTCCTTTATCATACCAAAAATATTGGACGCCAATGAGAGTTCTGT
GTTTATAAATATTTATTGTTTTCAGAGGGTTTCAAGTTTAGCATGAGGCT
CTTACTGTACCACGGTCAGGTCCAAACGCGGCAGGGACACGAGAGTGTCG
CATTAAAGCCGTAGCGCCCATGAGCAAACCCGCAGACAGTATGATATGAC
GATGGTGGTGATGGTGGTGATAATGATGAAGATGGTGTGTTGATGCGGAT
GATGGTGATTATGGTATTTCACGGCAATACTTGTGATATGATAAATAAAG
CGCATGCCACAATCCAGCAGTTATTAATTAACCAAACAAGGGTTCGATCG
GGAAGAAAAAAAAACACAAAATGAGTGAACAAACAAACAAGAAAAAAAAA
CAGAAAAAAAAACAGCACGCCGAATATATCATAGAAGAAACAAAAAATCA
ATACTTCAAGTATAAGGTACCTGGTACTCGGAGTATATGATAACGATGCC
CTCGTATGAGACGTCCTCTCTAAAACCCACATATGTATGCGATATACATC
TCCCCAACTATCAACCAGGTACCTCTGCAGACGGCAACACCTGGGCGAGG
GAGTTCCCTCAATGCTGGAGGCGTGGATGATACCGCCAAGACTGCGCGAA
ACCCGAGGATGCCAAGACAACAGCCCCTCCCCCGCCTACCCCCCGCGAAG
CTGAGAGGGAAGTGAACAAACGCCTTTCCCATTGGAAAACGGGGCGGTGC
GGGCAGATATGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8348:4068..5780-

>mRNA_S-dermatodea_contig8348.16528.1 ID=mRNA_S-dermatodea_contig8348.16528.1|Name=mRNA_S-dermatodea_contig8348.16528.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig8348:4068..5780- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATGTACCTCTGCAGACGGCAACACCTGGGCGAGGGAGTTCCCTCAATG
CTGGAGGCGTGGATGATACCGCCAAGACTGCGCGAAACCCGAGGATGCCA
AGACAACAGCCCCTCCCCCGCCTACCCCCCGCGAAGCTGAGTACCTCTGC
AGACGGCAACACCTGGGCGAGGGAGTTCCCTCAATGCTGGAGGCGTGGAT
GATACCGCCAAGACTGCGCGAAACCCGAGGATGCCAAGACAACAGCCCCT
CCCCCGCCTACCCCCCGCGAAGCTGA
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