mRNA_S-dermatodea_contig83471.16527.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83471.16527.1
Unique NamemRNA_S-dermatodea_contig83471.16527.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83471.16527.1 vs. uniprot
Match: V5K3Y9_SACJA (Trehalose-6-phosohate synthase n=1 Tax=Saccharina japonica TaxID=88149 RepID=V5K3Y9_SACJA)

HSP 1 Score: 62.4 bits (150), Expect = 1.330e-9
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 QVGATAAVLIKSAAAELQRQQDEEGEHCDLEAASKRFSAGPSSAPTVDAAAISVMAELEMRAGGEEKTPG 210
            QVGATAAVLIKSAAAEL+RQQ+E  E   L+ AS    A PSSAP  D   IS+MA L   AG EEKTPG
Sbjct:  980 QVGATAAVLIKSAAAELKRQQEEADETDSLQPASALMGAHPSSAPA-DVTTISLMAGLGKHAG-EEKTPG 1047
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83471.16527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
V5K3Y9_SACJA1.330e-964.29Trehalose-6-phosohate synthase n=1 Tax=Saccharina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83471contigS-dermatodea_contig83471:183..408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size226
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.1805658-CDS-S-dermatodea_contig83471:182..4071622925337.1805658-CDS-S-dermatodea_contig83471:182..407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83471 183..407 +
1694079864.6697645-CDS-S-dermatodea_contig83471:182..4071694079864.6697645-CDS-S-dermatodea_contig83471:182..407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83471 183..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83471.16527.1prot_S-dermatodea_contig83471.16527.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83471 183..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83471.16527.1

>prot_S-dermatodea_contig83471.16527.1 ID=prot_S-dermatodea_contig83471.16527.1|Name=mRNA_S-dermatodea_contig83471.16527.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
QVGATAAVLIKSAAAELQRQQDEEGEHCDLEAASKRFSAGPSSAPTVDAA
AISVMAELEMRAGGEEKTPGFLDGG
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mRNA from alignment at S-dermatodea_contig83471:183..408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83471.16527.1 ID=mRNA_S-dermatodea_contig83471.16527.1|Name=mRNA_S-dermatodea_contig83471.16527.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=226bp|location=Sequence derived from alignment at S-dermatodea_contig83471:183..408+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGGCGCGACAGCAGCGGTGCTGATCAAATCCGCGGCCGCCGAGCT
CCAGCGGCAGCAAGACGAAGAAGGCGAACACTGCGACTTGGAAGCGGCCA
GCAAGAGGTTCTCCGCGGGTCCGTCTTCCGCGCCCACCGTGGACGCGGCC
GCGATTTCGGTGATGGCGGAGCTGGAGATGCGCGCGGGCGGGGAAGAAAA
AACGCCGGGTTTCCTGGACGGGGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig83471:183..408+

>mRNA_S-dermatodea_contig83471.16527.1 ID=mRNA_S-dermatodea_contig83471.16527.1|Name=mRNA_S-dermatodea_contig83471.16527.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig83471:183..408+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGGCGCGACAGCAGCGGTGCTGATCAAATCCGCGGCCGCCGAGCT
CCAGCGGCAGCAAGACGAAGAAGGCGAACACTGCGACTTGGAAGCGGCCA
GCAAGAGGTTCTCCGCGGGTCCGTCTTCCGCGCCCACCGTGGACGCGGCC
GCGATTTCGGTGATGGCGGAGCTGGAGATGCGCGCGGGCGGGGAAGAAAA
AACGCCGGGTTTCCTGGACGGGGGACAGGTGGGCGCGACAGCAGCGGTGC
TGATCAAATCCGCGGCCGCCGAGCTCCAGCGGCAGCAAGACGAAGAAGGC
GAACACTGCGACTTGGAAGCGGCCAGCAAGAGGTTCTCCGCGGGTCCGTC
TTCCGCGCCCACCGTGGACGCGGCCGCGATTTCGGTGATGGCGGAGCTGG
AGATGCGCGCGGGCGGGGAAGAAAAAACGCCGGGTTTCCTGGACGGGGGA
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