mRNA_S-dermatodea_contig83412.16524.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A7S6U9S9_9STRA (50S ribosomal protein L27, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9S9_9STRA) HSP 1 Score: 165 bits (418), Expect = 7.820e-52 Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIKCL 249
+AHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIKCL
Sbjct: 1 MAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIKCL 83
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A6P0NBT8_9CYAN (50S ribosomal protein L27 n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NBT8_9CYAN) HSP 1 Score: 125 bits (313), Expect = 7.730e-36 Identity = 57/81 (70.37%), Postives = 72/81 (88.89%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIK 243
+AHKKGAGSTKNGRDS +KRLGVKCF GH+V AG+IIVRQRGL+FKPG +GVGKDYT+YALK G+V++ T+K+K ++I+
Sbjct: 1 MAHKKGAGSTKNGRDSKAKRLGVKCFSGHRVGAGNIIVRQRGLSFKPGAQIGVGKDYTLYALKEGVVFYKTQKSKIFVTIE 81
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A8F0F6S3_AKKLU (Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F6S3_AKKLU) HSP 1 Score: 123 bits (308), Expect = 4.600e-35 Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
+AHKKGAGSTKNGRDS SKRLGVKCF GHKV AG+I++RQRGL++KPG NVG+G+DYT+YALK GLV F K K IS+
Sbjct: 1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHKVQAGNILIRQRGLSYKPGENVGIGRDYTLYALKEGLVSFKKKNKKTCISV 80
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A2I4Q2P8_9PHAE (50S ribosomal protein L27 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2P8_9PHAE) HSP 1 Score: 123 bits (308), Expect = 4.600e-35 Identity = 57/80 (71.25%), Postives = 70/80 (87.50%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
+AHKKGAGSTKNGRDSNSKRLGVKCF G KV AG+I++RQRGL FKPG++VGVGKDYT+YALK G+ ++ KK + ++SI
Sbjct: 1 MAHKKGAGSTKNGRDSNSKRLGVKCFHGQKVQAGNILIRQRGLHFKPGLHVGVGKDYTLYALKQGMTVYSLKKKETVVSI 80
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A2R4QPT1_9PHAE (50S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT1_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.320e-34 Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
+AHKKGAGSTKNGRDS KRLGVKCF GH+V AG+I++RQRGLTFKPG NVG+GKDYT+YALK G+VYF ISI
Sbjct: 1 MAHKKGAGSTKNGRDSKPKRLGVKCFHGHQVKAGNILIRQRGLTFKPGDNVGIGKDYTLYALKEGMVYFKKSNTTTSISI 80
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A0R6MBY3_UNDPI (50S ribosomal protein L27, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6MBY3_UNDPI) HSP 1 Score: 121 bits (304), Expect = 1.990e-34 Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
+AHKKGAGSTKNGRDS SKRLGVKCF GH V AG+I++RQRGL+FKPG NVG+GKDYT+YAL +GLV F KK + IS+
Sbjct: 1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVEAGNILIRQRGLSFKPGDNVGIGKDYTLYALTAGLVSFKKKKKQTCISV 80
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A8F0F794_9PHAE (Ribosomal protein L27 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F794_9PHAE) HSP 1 Score: 120 bits (302), Expect = 3.790e-34 Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNK 225
+AHKKGAGSTKNGRDS SKRLGVKCF GH+V AG+I++RQRGL+FKPG NVG GKDYT+YALK G V+F KK K
Sbjct: 1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHQVQAGNILIRQRGLSFKPGENVGTGKDYTLYALKEGSVFFQKKKKK 75
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: B2XTB2_HETAK (50S ribosomal protein L2 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTB2_HETAK) HSP 1 Score: 120 bits (302), Expect = 4.770e-34 Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIK 243
+AHKKGAGSTKNGRDSNSKRLGVKCF HKVS GSII+RQRGL K G N+G+GKD+T+YAL++GLV F +NK I+SI+
Sbjct: 1 MAHKKGAGSTKNGRDSNSKRLGVKCFQNHKVSKGSIIIRQRGLRVKAGENIGIGKDFTLYALEAGLVKFKKSRNKTIVSIE 81
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A8F0F9K0_9PHAE (Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F9K0_9PHAE) HSP 1 Score: 120 bits (300), Expect = 7.860e-34 Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
+AHKKGAGSTKNGRDS SKRLGVKCF GH V AG+I++RQRGL+FKPG NVGVG+DYT+YALK GLV F K IS+
Sbjct: 1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVQAGNILIRQRGLSFKPGSNVGVGRDYTLYALKEGLVSFKKVNKKTCISV 80
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A6B7EYQ0_9PHAE (50S ribosomal protein L27 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYQ0_9PHAE) HSP 1 Score: 120 bits (302), Expect = 8.860e-34 Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query: 1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
+AHKKGAGSTKNGRDSNSKRLGVKCF GHKV AGSI++RQRG TF+PG NVG+G+DYT+YA GLV F K+ K +S+
Sbjct: 1 MAHKKGAGSTKNGRDSNSKRLGVKCFHGHKVQAGSILIRQRGETFEPGKNVGIGRDYTLYASVDGLVSFKKKRRKTFVSV 80 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig83412.16524.1 >prot_S-dermatodea_contig83412.16524.1 ID=prot_S-dermatodea_contig83412.16524.1|Name=mRNA_S-dermatodea_contig83412.16524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINback to top mRNA from alignment at S-dermatodea_contig83412:174..425- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig83412.16524.1 ID=mRNA_S-dermatodea_contig83412.16524.1|Name=mRNA_S-dermatodea_contig83412.16524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at S-dermatodea_contig83412:174..425- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig83412:174..425- >mRNA_S-dermatodea_contig83412.16524.1 ID=mRNA_S-dermatodea_contig83412.16524.1|Name=mRNA_S-dermatodea_contig83412.16524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig83412:174..425- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |