mRNA_S-dermatodea_contig83412.16524.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83412.16524.1
Unique NamemRNA_S-dermatodea_contig83412.16524.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A7S6U9S9_9STRA (50S ribosomal protein L27, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9S9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.820e-52
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIKCL 249
            +AHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIKCL
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIKCL 83          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A6P0NBT8_9CYAN (50S ribosomal protein L27 n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NBT8_9CYAN)

HSP 1 Score: 125 bits (313), Expect = 7.730e-36
Identity = 57/81 (70.37%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIK 243
            +AHKKGAGSTKNGRDS +KRLGVKCF GH+V AG+IIVRQRGL+FKPG  +GVGKDYT+YALK G+V++ T+K+K  ++I+
Sbjct:    1 MAHKKGAGSTKNGRDSKAKRLGVKCFSGHRVGAGNIIVRQRGLSFKPGAQIGVGKDYTLYALKEGVVFYKTQKSKIFVTIE 81          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A8F0F6S3_AKKLU (Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F6S3_AKKLU)

HSP 1 Score: 123 bits (308), Expect = 4.600e-35
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
            +AHKKGAGSTKNGRDS SKRLGVKCF GHKV AG+I++RQRGL++KPG NVG+G+DYT+YALK GLV F  K  K  IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHKVQAGNILIRQRGLSYKPGENVGIGRDYTLYALKEGLVSFKKKNKKTCISV 80          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A2I4Q2P8_9PHAE (50S ribosomal protein L27 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2P8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.600e-35
Identity = 57/80 (71.25%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
            +AHKKGAGSTKNGRDSNSKRLGVKCF G KV AG+I++RQRGL FKPG++VGVGKDYT+YALK G+  ++ KK + ++SI
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFHGQKVQAGNILIRQRGLHFKPGLHVGVGKDYTLYALKQGMTVYSLKKKETVVSI 80          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A2R4QPT1_9PHAE (50S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT1_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.320e-34
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
            +AHKKGAGSTKNGRDS  KRLGVKCF GH+V AG+I++RQRGLTFKPG NVG+GKDYT+YALK G+VYF        ISI
Sbjct:    1 MAHKKGAGSTKNGRDSKPKRLGVKCFHGHQVKAGNILIRQRGLTFKPGDNVGIGKDYTLYALKEGMVYFKKSNTTTSISI 80          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A0R6MBY3_UNDPI (50S ribosomal protein L27, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6MBY3_UNDPI)

HSP 1 Score: 121 bits (304), Expect = 1.990e-34
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
            +AHKKGAGSTKNGRDS SKRLGVKCF GH V AG+I++RQRGL+FKPG NVG+GKDYT+YAL +GLV F  KK +  IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVEAGNILIRQRGLSFKPGDNVGIGKDYTLYALTAGLVSFKKKKKQTCISV 80          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A8F0F794_9PHAE (Ribosomal protein L27 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F794_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.790e-34
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNK 225
            +AHKKGAGSTKNGRDS SKRLGVKCF GH+V AG+I++RQRGL+FKPG NVG GKDYT+YALK G V+F  KK K
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHQVQAGNILIRQRGLSFKPGENVGTGKDYTLYALKEGSVFFQKKKKK 75          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: B2XTB2_HETAK (50S ribosomal protein L2 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTB2_HETAK)

HSP 1 Score: 120 bits (302), Expect = 4.770e-34
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISIK 243
            +AHKKGAGSTKNGRDSNSKRLGVKCF  HKVS GSII+RQRGL  K G N+G+GKD+T+YAL++GLV F   +NK I+SI+
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFQNHKVSKGSIIIRQRGLRVKAGENIGIGKDFTLYALEAGLVKFKKSRNKTIVSIE 81          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A8F0F9K0_9PHAE (Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F9K0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.860e-34
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
            +AHKKGAGSTKNGRDS SKRLGVKCF GH V AG+I++RQRGL+FKPG NVGVG+DYT+YALK GLV F     K  IS+
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVQAGNILIRQRGLSFKPGSNVGVGRDYTLYALKEGLVSFKKVNKKTCISV 80          
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Match: A0A6B7EYQ0_9PHAE (50S ribosomal protein L27 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYQ0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 8.860e-34
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFNTKKNKKIISI 240
            +AHKKGAGSTKNGRDSNSKRLGVKCF GHKV AGSI++RQRG TF+PG NVG+G+DYT+YA   GLV F  K+ K  +S+
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFHGHKVQAGSILIRQRGETFEPGKNVGIGRDYTLYASVDGLVSFKKKRRKTFVSV 80          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83412.16524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9S9_9STRA7.820e-5298.8050S ribosomal protein L27, chloroplastic n=1 Tax=S... [more]
A0A6P0NBT8_9CYAN7.730e-3670.3750S ribosomal protein L27 n=1 Tax=Moorena sp. SIO3... [more]
A0A8F0F6S3_AKKLU4.600e-3572.50Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2... [more]
A0A2I4Q2P8_9PHAE4.600e-3571.2550S ribosomal protein L27 n=1 Tax=Dictyopteris div... [more]
A0A2R4QPT1_9PHAE1.320e-3472.5050S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3... [more]
A0A0R6MBY3_UNDPI1.990e-3472.5050S ribosomal protein L27, chloroplastic n=23 Tax=... [more]
A0A8F0F794_9PHAE3.790e-3476.00Ribosomal protein L27 n=1 Tax=Protohalopteris sp. ... [more]
B2XTB2_HETAK4.770e-3471.6050S ribosomal protein L2 n=2 Tax=Heterosigma akash... [more]
A0A8F0F9K0_9PHAE7.860e-3472.50Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2... [more]
A0A6B7EYQ0_9PHAE8.860e-3471.2550S ribosomal protein L27 n=1 Tax=Cladosiphon okam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83412contigS-dermatodea_contig83412:174..425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog2880.D1J768
Preferred namerpl27
KEGG koko:K02899
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0010033,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0211@1,KOG4600@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.0106807-CDS-S-dermatodea_contig83412:173..4251622925337.0106807-CDS-S-dermatodea_contig83412:173..425Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83412 174..425 -
1694079864.5725152-CDS-S-dermatodea_contig83412:173..4251694079864.5725152-CDS-S-dermatodea_contig83412:173..425Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83412 174..425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83412.16524.1prot_S-dermatodea_contig83412.16524.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83412 174..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83412.16524.1

>prot_S-dermatodea_contig83412.16524.1 ID=prot_S-dermatodea_contig83412.16524.1|Name=mRNA_S-dermatodea_contig83412.16524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGIN
VGVGKDYTIYALKSGLVYFNTKKNKKIISIKCL*
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mRNA from alignment at S-dermatodea_contig83412:174..425-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83412.16524.1 ID=mRNA_S-dermatodea_contig83412.16524.1|Name=mRNA_S-dermatodea_contig83412.16524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at S-dermatodea_contig83412:174..425- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGCACACAAGAAAGGAGCAGGGAGTACGAAAAATGGTCGTGATTCTAA TTCAAAACGATTAGGAGTAAAGTGTTTTGGGGGTCATAAAGTAAGTGCCG GATCAATTATTGTAAGACAACGAGGTTTAACTTTTAAGCCTGGTATTAAT GTAGGAGTAGGTAAAGATTACACAATTTATGCATTAAAATCAGGTTTGGT TTATTTTAATACAAAGAAAAACAAGAAAATTATTTCTATTAAATGTTTAT GA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83412:174..425-

>mRNA_S-dermatodea_contig83412.16524.1 ID=mRNA_S-dermatodea_contig83412.16524.1|Name=mRNA_S-dermatodea_contig83412.16524.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig83412:174..425- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGCACACAAGAAAGGAGCAGGGAGTACGAAAAATGGTCGTGATTCTAA
TTCAAAACGATTAGGAGTAAAGTGTTTTGGGGGTCATAAAGTAAGTGCCG
GATCAATTATTGTAAGACAACGAGGTTTAACTTTTAAGCCTGGTATTAAT
GTAGGAGTAGGTAAAGATTACACAATTTATGCATTAAAATCAGGTTTGGT
TTATTTTAATACAAAGAAAAACAAGAAAATTATTTCTATTAAATGTTTAT
GATTGGCACACAAGAAAGGAGCAGGGAGTACGAAAAATGGTCGTGATTCT
AATTCAAAACGATTAGGAGTAAAGTGTTTTGGGGGTCATAAAGTAAGTGC
CGGATCAATTATTGTAAGACAACGAGGTTTAACTTTTAAGCCTGGTATTA
ATGTAGGAGTAGGTAAAGATTACACAATTTATGCATTAAAATCAGGTTTG
GTTTATTTTAATACAAAGAAAAACAAGAAAATTATTTCTATTAAATGTTT
ATGA
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