mRNA_S-dermatodea_contig83385.16522.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83385.16522.1
Unique NamemRNA_S-dermatodea_contig83385.16522.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83385.16522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83385contigS-dermatodea_contig83385:193..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83385.16522.1prot_S-dermatodea_contig83385.16522.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83385 195..506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925336.7289655-UTR-S-dermatodea_contig83385:192..1941622925336.7289655-UTR-S-dermatodea_contig83385:192..194Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83385 193..194 +
1694079864.3589542-UTR-S-dermatodea_contig83385:192..1941694079864.3589542-UTR-S-dermatodea_contig83385:192..194Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83385 193..194 +
1622925336.7566407-UTR-S-dermatodea_contig83385:506..5121622925336.7566407-UTR-S-dermatodea_contig83385:506..512Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83385 507..512 +
1694079864.375947-UTR-S-dermatodea_contig83385:506..5121694079864.375947-UTR-S-dermatodea_contig83385:506..512Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83385 507..512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925336.742539-CDS-S-dermatodea_contig83385:194..5061622925336.742539-CDS-S-dermatodea_contig83385:194..506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83385 195..506 +
1694079864.36772-CDS-S-dermatodea_contig83385:194..5061694079864.36772-CDS-S-dermatodea_contig83385:194..506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83385 195..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83385.16522.1

>prot_S-dermatodea_contig83385.16522.1 ID=prot_S-dermatodea_contig83385.16522.1|Name=mRNA_S-dermatodea_contig83385.16522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MPKIKICRGKPGHRIKTLHGLQAKTDSQQQTKADVRWYRETDAPTSTCFK
QVFVVESCKTTRNPPTSHTRKKSEASRLHASPSQLSTLRLKMLSSKRQTV
YIT*
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mRNA from alignment at S-dermatodea_contig83385:193..512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83385.16522.1 ID=mRNA_S-dermatodea_contig83385.16522.1|Name=mRNA_S-dermatodea_contig83385.16522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=320bp|location=Sequence derived from alignment at S-dermatodea_contig83385:193..512+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACATGCCAAAAATAAAAATATGCAGAGGGAAACCCGGCCACCGGATCAAA
ACCCTCCACGGACTCCAAGCAAAAACAGACAGTCAACAACAAACCAAGGC
AGATGTACGATGGTACCGGGAAACCGATGCACCTACATCAACGTGCTTTA
AACAGGTCTTTGTCGTCGAGTCCTGCAAGACCACTCGAAATCCACCAACA
TCTCACACCCGGAAGAAGTCAGAAGCATCGCGACTACACGCAAGTCCCTC
CCAGCTCTCTACACTTAGGCTTAAAATGTTATCTTCCAAACGACAAACGG
TCTACATCACCTGACTTGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig83385:193..512+

>mRNA_S-dermatodea_contig83385.16522.1 ID=mRNA_S-dermatodea_contig83385.16522.1|Name=mRNA_S-dermatodea_contig83385.16522.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig83385:193..512+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCAAAAATAAAAATATGCAGAGGGAAACCCGGCCACCGGATCAAAAC
CCTCCACGGACTCCAAGCAAAAACAGACAGTCAACAACAAACCAAGGCAG
ATGTACGATGGTACCGGGAAACCGATGCACCTACATCAACGTGCTTTAAA
CAGGTCTTTGTCGTCGAGTCCTGCAAGACCACTCGAAATCCACCAACATC
TCACACCCGGAAGAAGTCAGAAGCATCGCGACTACACGCAAGTCCCTCCC
AGCTCTCTACACTTAGGCTTAAAATGTTATCTTCCAAACGACAAACGGTC
TACATCACCTGAATGCCAAAAATAAAAATATGCAGAGGGAAACCCGGCCA
CCGGATCAAAACCCTCCACGGACTCCAAGCAAAAACAGACAGTCAACAAC
AAACCAAGGCAGATGTACGATGGTACCGGGAAACCGATGCACCTACATCA
ACGTGCTTTAAACAGGTCTTTGTCGTCGAGTCCTGCAAGACCACTCGAAA
TCCACCAACATCTCACACCCGGAAGAAGTCAGAAGCATCGCGACTACACG
CAAGTCCCTCCCAGCTCTCTACACTTAGGCTTAAAATGTTATCTTCCAAA
CGACAAACGGTCTACATCACCTGA
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