mRNA_S-dermatodea_contig8326.16512.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8326.16512.1
Unique NamemRNA_S-dermatodea_contig8326.16512.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8326.16512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8326contigS-dermatodea_contig8326:44..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.9613748-UTR-S-dermatodea_contig8326:43..2251622925335.9613748-UTR-S-dermatodea_contig8326:43..225Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8326 44..225 +
1694079863.806122-UTR-S-dermatodea_contig8326:43..2251694079863.806122-UTR-S-dermatodea_contig8326:43..225Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8326 44..225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.9725356-CDS-S-dermatodea_contig8326:225..5761622925335.9725356-CDS-S-dermatodea_contig8326:225..576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8326 226..576 +
1694079863.8158686-CDS-S-dermatodea_contig8326:225..5761694079863.8158686-CDS-S-dermatodea_contig8326:225..576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8326 226..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8326.16512.1prot_S-dermatodea_contig8326.16512.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8326 226..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8326.16512.1

>prot_S-dermatodea_contig8326.16512.1 ID=prot_S-dermatodea_contig8326.16512.1|Name=mRNA_S-dermatodea_contig8326.16512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MNDVNNAVSSLLPHTRQQDNAKNTNERKTTMNGRGPLEKYLYISIGLFPK
SRTNLFTSTVPYYLHHLKKSEERTTCRSLVSHVQKTRMTHGGGYIVFYGN
QSARRERSRRDIIFYTR
back to top

mRNA from alignment at S-dermatodea_contig8326:44..576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8326.16512.1 ID=mRNA_S-dermatodea_contig8326.16512.1|Name=mRNA_S-dermatodea_contig8326.16512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=533bp|location=Sequence derived from alignment at S-dermatodea_contig8326:44..576+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTAGCCACGGGGCGCGCATTACAGTAACTTAAATAGTTGTGGTGATGAT
GATGCAGCCCCGACCTAACTCTGAATGCTGTTTTTGTAAAAACTACCATT
AAGAAGTAGACCTTGCAGTATTCGTCTTCCCTTTCTTGCAAGTAAGTGAC
CTGTTACAGTATAGCTATATAGCTGTTTTTCGATGAATGACGTAAATAAT
GCTGTGTCATCATTATTACCCCATACCCGACAACAAGATAACGCAAAAAA
CACGAACGAACGAAAAACCACAATGAATGGTCGAGGACCTTTGGAAAAAT
ACCTATATATAAGTATAGGTCTTTTTCCAAAGTCGAGGACAAATCTCTTC
ACCTCTACTGTACCTTATTATCTACATCATCTCAAGAAATCGGAAGAGAG
AACTACTTGTAGAAGTTTGGTGAGTCATGTACAGAAAACACGAATGACGC
ATGGTGGTGGGTATATAGTATTTTACGGTAACCAGTCAGCAAGAAGAGAG
AGGAGCAGGAGGGATATAATATTTTATACAAGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8326:44..576+

>mRNA_S-dermatodea_contig8326.16512.1 ID=mRNA_S-dermatodea_contig8326.16512.1|Name=mRNA_S-dermatodea_contig8326.16512.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig8326:44..576+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATGACGTAAATAATGCTGTGTCATCATTATTACCCCATACCCGACA
ACAAGATAACGCAAAAAACACGAACGAACGAAAAACCACAATGAATGGTC
GAGGACCTTTGGAAAAATACCTATATATAAGTATAGGTCTTTTTCCAAAG
TCGAGGACAAATCTCTTCACCTCTACTGTACCTTATTATCTACATCATCT
CAAGAAATCGGAAGAGAGAACTACTTGTAGAAGTTTGGTGAGTCATGTAC
AGAAAACACGAATGACGCATGGTGGTGGGTATATAGTATTTTACGGTAAC
CAGTCAGCAAGAAGAGAGAGGAGCAGGAGGGATATAATATTTTATACAAG
AATGAATGACGTAAATAATGCTGTGTCATCATTATTACCCCATACCCGAC
AACAAGATAACGCAAAAAACACGAACGAACGAAAAACCACAATGAATGGT
CGAGGACCTTTGGAAAAATACCTATATATAAGTATAGGTCTTTTTCCAAA
GTCGAGGACAAATCTCTTCACCTCTACTGTACCTTATTATCTACATCATC
TCAAGAAATCGGAAGAGAGAACTACTTGTAGAAGTTTGGTGAGTCATGTA
CAGAAAACACGAATGACGCATGGTGGTGGGTATATAGTATTTTACGGTAA
CCAGTCAGCAAGAAGAGAGAGGAGCAGGAGGGATATAATATTTTATACAA
GA
back to top