mRNA_S-dermatodea_contig83245.16510.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83245.16510.1
Unique NamemRNA_S-dermatodea_contig83245.16510.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83245.16510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83245contigS-dermatodea_contig83245:25..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size710
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.8372114-CDS-S-dermatodea_contig83245:24..7321622925335.8372114-CDS-S-dermatodea_contig83245:24..732Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83245 25..732 +
1694079863.7384965-CDS-S-dermatodea_contig83245:24..7321694079863.7384965-CDS-S-dermatodea_contig83245:24..732Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83245 25..732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83245.16510.1prot_S-dermatodea_contig83245.16510.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83245 25..732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83245.16510.1

>prot_S-dermatodea_contig83245.16510.1 ID=prot_S-dermatodea_contig83245.16510.1|Name=mRNA_S-dermatodea_contig83245.16510.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=236bp
APQGRKVPGGRRPRPRGRGSRPTQGPNSSSSSSSSNNNNRRSSKYISWKS
PFAKSKTCYRCGKLGHVRARCPDRAADSLSVDSRAEDTAGLRAVSASGKS
LDGMGVSGCCFSAESHTSGGCSLVETENKWLLSFSDNISWHPNFTSDLQP
FSEGIAAGLGIVFPLKGREPMLLWDVCTSGRLSDYCTRSTAVRLSMRGGV
SARGSDALPASALPVLEAPVEVDKTRGGPAVCINKS
back to top

mRNA from alignment at S-dermatodea_contig83245:25..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83245.16510.1 ID=mRNA_S-dermatodea_contig83245.16510.1|Name=mRNA_S-dermatodea_contig83245.16510.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=709bp|location=Sequence derived from alignment at S-dermatodea_contig83245:25..733+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACCGCAGGGACGCAAGGTTCCTGGAGGACGACGGCCGAGACCTCGAGG
CCGTGGCAGTAGACCTACGCAGGGTCCCAACAGCAGCAGCAGCAGCAGCA
GCAGCAACAACAACAACAGAAGAAGCAGTAAATATATTTCCTGGAAGTCG
CCATTCGCCAAGAGCAAGACGTGCTACAGGTGTGGCAAGCTGGGACACGT
CCGCGCTCGCTGCCCGGACCGCGCCGCCGATTCACTGTCGGTGGATTCGA
GGGCAGAAGATACTGCAGGGCTTCGCGCTGTAAGCGCTTCAGGGAAGTCT
CTTGATGGAATGGGCGTATCTGGTTGTTGTTTCTCGGCGGAAAGTCATAC
TTCTGGTGGTTGTTCGTTGGTGGAGACTGAGAACAAATGGTTGCTCTCTT
TTTCGGATAATATTTCCTGGCATCCAAACTTTACGTCGGATCTACAGCCG
TTCAGCGAAGGCATCGCTGCAGGATTGGGGATAGTTTTTCCATTGAAGGG
GCGTGAACCAATGCTCTTGTGGGATGTATGTACGAGTGGGCGACTGTCTG
ATTACTGTACACGCTCGACGGCGGTCCGCCTCTCCATGCGGGGAGGGGTT
TCGGCGCGGGGGAGCGACGCTCTTCCCGCAAGCGCTCTGCCGGTGCTAGA
AGCACCGGTGGAGGTCGACAAGACGCGCGGTGGTCCTGCTGTGTGCATCA
ACAAGTCGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig83245:25..733+

>mRNA_S-dermatodea_contig83245.16510.1 ID=mRNA_S-dermatodea_contig83245.16510.1|Name=mRNA_S-dermatodea_contig83245.16510.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at S-dermatodea_contig83245:25..733+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACCGCAGGGACGCAAGGTTCCTGGAGGACGACGGCCGAGACCTCGAGG
CCGTGGCAGTAGACCTACGCAGGGTCCCAACAGCAGCAGCAGCAGCAGCA
GCAGCAACAACAACAACAGAAGAAGCAGTAAATATATTTCCTGGAAGTCG
CCATTCGCCAAGAGCAAGACGTGCTACAGGTGTGGCAAGCTGGGACACGT
CCGCGCTCGCTGCCCGGACCGCGCCGCCGATTCACTGTCGGTGGATTCGA
GGGCAGAAGATACTGCAGGGCTTCGCGCTGTAAGCGCTTCAGGGAAGTCT
CTTGATGGAATGGGCGTATCTGGTTGTTGTTTCTCGGCGGAAAGTCATAC
TTCTGGTGGTTGTTCGTTGGTGGAGACTGAGAACAAATGGTTGCTCTCTT
TTTCGGATAATATTTCCTGGCATCCAAACTTTACGTCGGATCTACAGCCG
TTCAGCGAAGGCATCGCTGCAGGATTGGGGATAGTTTTTCCATTGAAGGG
GCGTGAACCAATGCTCTTGTGGGATGTATGTACGAGTGGGCGACTGTCTG
ATTACTGTACACGCTCGACGGCGGTCCGCCTCTCCATGCGGGGAGGGGTT
TCGGCGCGGGGGAGCGACGCTCTTCCCGCAAGCGCTCTGCCGGTGCTAGA
AGCACCGGTGGAGGTCGACAAGACGCGCGGTGGTCCTGCTGTGTGCATCA
ACAAGTCGGCACCGCAGGGACGCAAGGTTCCTGGAGGACGACGGCCGAGA
CCTCGAGGCCGTGGCAGTAGACCTACGCAGGGTCCCAACAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAGAAGAAGCAGTAAATATATTTCCT
GGAAGTCGCCATTCGCCAAGAGCAAGACGTGCTACAGGTGTGGCAAGCTG
GGACACGTCCGCGCTCGCTGCCCGGACCGCGCCGCCGATTCACTGTCGGT
GGATTCGAGGGCAGAAGATACTGCAGGGCTTCGCGCTGTAAGCGCTTCAG
GGAAGTCTCTTGATGGAATGGGCGTATCTGGTTGTTGTTTCTCGGCGGAA
AGTCATACTTCTGGTGGTTGTTCGTTGGTGGAGACTGAGAACAAATGGTT
GCTCTCTTTTTCGGATAATATTTCCTGGCATCCAAACTTTACGTCGGATC
TACAGCCGTTCAGCGAAGGCATCGCTGCAGGATTGGGGATAGTTTTTCCA
TTGAAGGGGCGTGAACCAATGCTCTTGTGGGATGTATGTACGAGTGGGCG
ACTGTCTGATTACTGTACACGCTCGACGGCGGTCCGCCTCTCCATGCGGG
GAGGGGTTTCGGCGCGGGGGAGCGACGCTCTTCCCGCAAGCGCTCTGCCG
GTGCTAGAAGCACCGGTGGAGGTCGACAAGACGCGCGGTGGTCCTGCTGT
GTGCATCAACAAGTCG
back to top