mRNA_S-dermatodea_contig83215.16507.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83215.16507.1
Unique NamemRNA_S-dermatodea_contig83215.16507.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83215.16507.1 vs. uniprot
Match: D7FWU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU4_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.010e-15
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:   29 SDDAEFLTMLVPSGALDWGASSIAVRSALNATAADSGG--------VEGGGAWVEIECRVLNARLVQDVAF 217
            S D+EFLTMLVPS ALDWG S++AVR++LN T+   GG             +WVEI+C++L+ARLVQDV+F
Sbjct:  165 SSDSEFLTMLVPSSALDWGPSTLAVRASLNGTSDGDGGRGATAGXXXXXXSSWVEIDCQILSARLVQDVSF 235
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BLAST of mRNA_S-dermatodea_contig83215.16507.1 vs. uniprot
Match: A0A6H5KBR4_9PHAE (Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.870e-11
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:   29 SDDAEFLTMLVPSGALDWGASSIAVRSALNATAADSGGVEGGG------AWVEIECRVLNARLVQ 205
            S D+EFLTMLVPS +LDWG S++AVR++LN T+   G            +WVEI+C++L+ARLVQ
Sbjct: 1238 SSDSEFLTMLVPSSSLDWGPSTLAVRASLNGTSDSDGXXXXXXXXXXXXSWVEIDCQILSARLVQ 1302
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83215.16507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWU4_ECTSI3.010e-1554.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBR4_9PHAE9.870e-1152.31Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83215contigS-dermatodea_contig83215:120..409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size290
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83215.16507.1prot_S-dermatodea_contig83215.16507.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83215 139..345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.6641302-UTR-S-dermatodea_contig83215:119..1381622925335.6641302-UTR-S-dermatodea_contig83215:119..138Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83215 120..138 +
1694079863.6122649-UTR-S-dermatodea_contig83215:119..1381694079863.6122649-UTR-S-dermatodea_contig83215:119..138Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83215 120..138 +
1622925335.6898453-UTR-S-dermatodea_contig83215:345..4091622925335.6898453-UTR-S-dermatodea_contig83215:345..409Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83215 346..409 +
1694079863.634398-UTR-S-dermatodea_contig83215:345..4091694079863.634398-UTR-S-dermatodea_contig83215:345..409Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83215 346..409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.6788144-CDS-S-dermatodea_contig83215:138..3451622925335.6788144-CDS-S-dermatodea_contig83215:138..345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83215 139..345 +
1694079863.623278-CDS-S-dermatodea_contig83215:138..3451694079863.623278-CDS-S-dermatodea_contig83215:138..345Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83215 139..345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83215.16507.1

>prot_S-dermatodea_contig83215.16507.1 ID=prot_S-dermatodea_contig83215.16507.1|Name=mRNA_S-dermatodea_contig83215.16507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
MRFSDDAEFLTMLVPSGALDWGASSIAVRSALNATAADSGGVEGGGAWVE
IECRVLNARLVQDVAFLA*
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mRNA from alignment at S-dermatodea_contig83215:120..409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83215.16507.1 ID=mRNA_S-dermatodea_contig83215.16507.1|Name=mRNA_S-dermatodea_contig83215.16507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=290bp|location=Sequence derived from alignment at S-dermatodea_contig83215:120..409+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTTTCCGCAACGACGAAATGCGTTTTTCCGACGACGCCGAATTCCTGA
CGATGCTCGTCCCCTCTGGGGCCCTGGACTGGGGAGCTAGCTCCATCGCA
GTTCGCTCTGCCCTGAACGCTACTGCGGCCGATTCGGGCGGGGTCGAGGG
TGGAGGCGCGTGGGTCGAGATCGAGTGCCGGGTCTTGAATGCGCGCCTCG
TGCAGGATGTAGCATTCCTGGCCTGAGGATGGTAATGATGGTGGTGATGA
TGATGGTGTTGATGGTGATGGTGTGTGTGTGTCTTGTCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig83215:120..409+

>mRNA_S-dermatodea_contig83215.16507.1 ID=mRNA_S-dermatodea_contig83215.16507.1|Name=mRNA_S-dermatodea_contig83215.16507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig83215:120..409+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTTTTTCCGACGACGCCGAATTCCTGACGATGCTCGTCCCCTCTGG
GGCCCTGGACTGGGGAGCTAGCTCCATCGCAGTTCGCTCTGCCCTGAACG
CTACTGCGGCCGATTCGGGCGGGGTCGAGGGTGGAGGCGCGTGGGTCGAG
ATCGAGTGCCGGGTCTTGAATGCGCGCCTCGTGCAGGATGTAGCATTCCT
GGCCTGAATGCGTTTTTCCGACGACGCCGAATTCCTGACGATGCTCGTCC
CCTCTGGGGCCCTGGACTGGGGAGCTAGCTCCATCGCAGTTCGCTCTGCC
CTGAACGCTACTGCGGCCGATTCGGGCGGGGTCGAGGGTGGAGGCGCGTG
GGTCGAGATCGAGTGCCGGGTCTTGAATGCGCGCCTCGTGCAGGATGTAG
CATTCCTGGCCTGA
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