mRNA_S-dermatodea_contig832.16504.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig832.16504.1
Unique NamemRNA_S-dermatodea_contig832.16504.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: D8LEU7_ECTSI (Cysteine desulfurase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEU7_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 3.230e-87
Identity = 133/166 (80.12%), Postives = 157/166 (94.58%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRRRGILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHLLSANLADEVRVHGPRNPSMRLPNTLSIGIPGLEARILLEKL 498
            ++VGS+QPI +IA ACR+RGI+CHTDAAQSIGKV VKV DLGVDMLT+VGHKFGAPKGVAALFVRRGLALPPM+HGGGQEAGRRAGTENVLLISGMGKAAE+V+ EL+RLS+HL+ MRERLLE L++A+L D V+VHGPR+PS+RLPNTLSIG+PG+EAR+LLE++
Sbjct:  258 NEVGSLQPITEIAEACRQRGIMCHTDAAQSIGKVPVKVADLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVELERLSKHLAAMRERLLELLMAADLGDGVKVHGPRSPSLRLPNTLSIGLPGVEARVLLERV 423          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: A0A2P6TKZ5_CHLSO (Cysteine desulfurase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TKZ5_CHLSO)

HSP 1 Score: 241 bits (615), Expect = 4.060e-75
Identity = 124/209 (59.33%), Postives = 163/209 (77.99%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRRRGILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHLLSANLADEVRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACHAGGTTMSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++VGS+QP+  +A A R+RG+L H DAAQSIGKV V V+ LGVDMLTIVGHKFGAPKGVAAL++RRG+A+  ++ GGGQE GRRAGTENVLL++G+GKAA++V+ EL   + H+  +R+ L   LL+   A   R++GP + + RLPNTLSIGI G++A  LL +LSE +AASAG+ACH+GG ++S VL+AMGV +    GTLR SVGR
Sbjct:  186 NEVGSLQPVADVAAAARQRGVLVHCDAAQSIGKVPVDVQQLGVDMLTIVGHKFGAPKGVAALYIRRGVAIERLLCGGGQEGGRRAGTENVLLLAGLGKAADLVSQELPATAAHMRALRDSLQSQLLAGLPAGAARINGPSDDAQRLPNTLSIGIKGIQASALLAELSEQLAASAGAACHSGGQSVSAVLRAMGVPHEHALGTLRLSVGR 394          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: E1ZDB8_CHLVA (Aminotran_5 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZDB8_CHLVA)

HSP 1 Score: 224 bits (572), Expect = 9.650e-69
Identity = 120/210 (57.14%), Postives = 154/210 (73.33%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRRRGILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHLLSANLADEVRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACHAGGTT-MSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++VGS+QP+ Q+A   RR G L H DAAQS+GKV V V+ LGVDMLT+V HKFG PKGVAAL+VRRG+ L  ++ GGGQE GRRAGTENV+L++G+GKAAE+V+ EL   + H++ MR+ L + LL+        +HGP + ++RLPNTLSIGI G+ A  LL +LSE +AASAG+ACH+GG   +S VLQAM V      GTLR S GR
Sbjct:  177 NEVGSIQPVAQLAALARRAGALMHCDAAQSLGKVDVDVQQLGVDMLTVVAHKFGGPKGVAALYVRRGVRLERLLCGGGQEGGRRAGTENVVLVAGLGKAAELVSRELPATAAHMAAMRDSLQQQLLAGLPPSTALIHGPADDALRLPNTLSIGIRGIAAARLLAELSEQLAASAGAACHSGGGHGVSAVLQAMAVPTEHAVGTLRLSTGR 386          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: A0A2P6V8I3_9CHLO (Cysteine desulfurase isoform A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V8I3_9CHLO)

HSP 1 Score: 221 bits (562), Expect = 3.220e-67
Identity = 118/209 (56.46%), Postives = 156/209 (74.64%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRRRGILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHLLSANLADEVRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACHAGGTTMSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++VGS+ P+ ++A   R+RGIL H+DAAQS+GKV V V  LGVD LTIVGHKFGAPKGVAALFVRRG+ L  ++ GGGQE G+RAGTE+VLL++G+G AA VV  EL   + H++ +R+ L + LL+       R++GP + + RLPNTLSIGI G++A  LL +LS+ +AASAG+ACH+GG ++S VL+AM V      GTLR SVGR
Sbjct:  184 NEVGSILPVAELAALARQRGILLHSDAAQSLGKVEVDVTRLGVDALTIVGHKFGAPKGVAALFVRRGVHLERLLCGGGQEGGQRAGTESVLLLAGLGAAAAVVAAELPATAAHMAALRDSLQQQLLAGLPPGTARINGPSDAARRLPNTLSIGIAGIQASALLAELSQQLAASAGAACHSGGGSVSAVLRAMQVPLPHALGTLRLSVGR 392          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: A0A7S4C1G4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1G4_CHRCT)

HSP 1 Score: 214 bits (545), Expect = 5.170e-66
Identity = 118/212 (55.66%), Postives = 151/212 (71.23%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRRR--GILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHLLSANLADEVRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACHAG-GTTMSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++VGSVQPI +I+   +     +L HTDAAQSIGKV + VR+LGVDMLT+VGHK GAPKGV AL+VR GL LPP++HGGGQEAGRRAGTE+VLL++ +G AA +   +L  LS+H+   R+RL   + SA   +  RV+GP N + RLPNTLSIG+ G+ A  LL  L + +AASAG+ACH+    T+S VL+AM V      GTLR S GR
Sbjct:   66 NEVGSVQPIAEISSMVKSEMPHVLIHTDAAQSIGKVPIDVRELGVDMLTLVGHKMGAPKGVGALYVRAGLKLPPLLHGGGQEAGRRAGTESVLLLAALGAAATIARTDLVPLSRHMRATRDRLAYRITSALGPNATRVNGPHNDAQRLPNTLSIGLKGVSAAELLHTLRDQLAASAGAACHSQEAATVSAVLRAMRVPREYALGTLRLSTGR 277          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: A4S300_OSTLU (Aminotran_5 domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S300_OSTLU)

HSP 1 Score: 213 bits (542), Expect = 2.600e-64
Identity = 124/220 (56.36%), Postives = 152/220 (69.09%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRRRGILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPM--VHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHLLSANLADE---VRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACH------AGGTTMSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++ G++QP+ +IA   R RG+L HTDAAQS GKV VKV  LGVDM TIVGHK GAPKGV AL++RRG  L      +GGGQE+GRRAGTENVL I G+GKA E+V  E+D   +HL  MR+ L + L+ A    +   VRV+GPR+   RLPNTL+IGI GL A I L +LSE +AASAG+ACH      +GG T+S VL+AM V      GTLR SVGR
Sbjct:  159 NETGAIQPVAEIARRARERGVLTHTDAAQSAGKVPVKVDALGVDMATIVGHKIGAPKGVGALYIRRGTDLGDAKPFYGGGQESGRRAGTENVLHIVGLGKACEIVEREMDTCPKHLKAMRDDLQKRLVDALGGTDGSGVRVNGPRDDDKRLPNTLNIGIKGLLASITLMELSELLAASAGAACHTPDAATSGGATVSSVLEAMNVPMEYAVGTLRLSVGR 378          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: R1CHP5_EMIHU (Cysteine desulfurase NFS1 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CHP5_EMIHU)

HSP 1 Score: 210 bits (534), Expect = 4.540e-63
Identity = 117/211 (55.45%), Postives = 146/211 (69.19%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACR--RRGILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHLLSANLADEVRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACHAGGTTMSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++VGSVQP+ QIA A R  R  +L HTDAAQSIGKV V  R LGVD+LT+VGHKFGAPKG+AAL++R GLALP M+HGGGQE+GRRAGTE   ++  +G AA +   E   L +H+   R+ L   L+    A   RV+GP + S RLPNTLSIG+  + A  LLE LSE +AASAG+ACHA   ++S VL+A+ V      GTLR S GR
Sbjct:  161 NEVGSVQPVRQIADAVRALRPSVLVHTDAAQSIGKVDVDTRALGVDLLTLVGHKFGAPKGIAALYIRSGLALPRMIHGGGQESGRRAGTECTPMVVALGTAAAIARAEAAPLREHMRRTRDALESALVERLPAGSTRVNGPADASRRLPNTLSIGLRDVRAAELLETLSERLAASAGAACHANAASVSAVLRALRVPPEFAVGTLRLSTGR 371          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: D8U8R1_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U8R1_VOLCA)

HSP 1 Score: 206 bits (525), Expect = 7.230e-62
Identity = 121/234 (51.71%), Postives = 154/234 (65.81%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRR---------------------RGILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHL---LSANLADEVRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACHAG-GTTMSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++VG+VQPI +IA A RR                      G+L H+DAAQS GKV + VR LGVD LTIVGHKFGAPKGVAAL++RRG+ L    HGGGQE GRRAGTEN++ + G+G AAE+   E  RL +HL  M ERL+E L   L     D++R++GPR P+ RLPNTLS+ I GL + + L++LS  +AASAG+ACH+G   ++S VL+AM V      GTLR S GR
Sbjct:  138 NEVGAVQPIAEIAAAARRAHARFTXXXXXXXXXXGCTGTNGLLVHSDAAQSTGKVELDVRTLGVDALTIVGHKFGAPKGVAALYIRRGVHLDNYFHGGGQEGGRRAGTENIMQVVGLGAAAELARREGPRLRRHLGDMAERLMEALRAGLRPEDQDKLRLNGPRQPASRLPNTLSLSIRGLNSAVALQRLSGQLAASAGAACHSGEAASVSAVLRAMRVPFEFAAGTLRLSTGR 371          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: C1EHB0_MICCC (Aminotran_5 domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EHB0_MICCC)

HSP 1 Score: 206 bits (523), Expect = 1.080e-61
Identity = 116/216 (53.70%), Postives = 146/216 (67.59%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRRRG--ILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLLEHLLSANLADE---VRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACHAG--GTTMSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++ G++QP+ + A   R +   +L HTDAAQS GK+ VKV DLGVDM T+VGHK GAPKGVAAL+V        ++HGGGQE+GRRAGTENVL I G+G A E+V  E D L  H+S MR+ L   L S    D+   VRV+GPR+ + RLPNTLS+GI G+ A  LL+ L + VAASAG+ACH+G    ++S VL AM V      GTLR SVGR
Sbjct:  162 NETGAIQPVAECARLAREKNEDVLIHTDAAQSCGKIPVKVNDLGVDMCTVVGHKIGAPKGVAALYVASAAPFSKLLHGGGQESGRRAGTENVLEIVGLGAACELVEREKDILPSHMSAMRDELSRRLASGLGGDDGSGVRVNGPRDDAKRLPNTLSVGIKGVSASQLLDVLKDDVAASAGAACHSGEAAASVSAVLSAMAVPEEYAIGTLRLSVGR 377          
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Match: A0A836CMI1_9STRA (Pyridoxal phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI1_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.860e-61
Identity = 116/224 (51.79%), Postives = 154/224 (68.75%), Query Frame = 1
Query:    1 HQVGSVQPIEQIAGACRRRGILCHTDAAQSIGKVSVKVRDLGVDMLTIVGHKFGAPKGVAALFVRRGLA--LPPMVHGGGQEAGRRAGTENVLLISGMGKAAEVVNFELDRLSQHLSVMRERLL----EHLLSANLADEVRVHGPRNPSMRLPNTLSIGIPGLEARILLEKLSETVAASAGSACH---AGGTT------MSGVLQAMGVDNSTGFGTLRFSVGR 627
            ++VGS+QP+ ++A  CR RGILCHTDAAQS+GKV + VR+LGVDMLTIVGHKFGAPKG+AAL++RR +    PP + GGGQE G+RAGTE+  +I G+GKA ++   E D  + H+  +R+ LL      L    L+   RVHGP + + RLPNTLSI + G+ A  LL+++ +  AASAG+ACH   A G+       +S VL+AMGV  S   GT+R SVGR
Sbjct:  160 NEVGSLQPVAEVARLCRERGILCHTDAAQSLGKVKIDVRELGVDMLTIVGHKFGAPKGIAALYIRREVLADFPPFLLGGGQEGGKRAGTESTAMIVGLGKACQIALDEADATTAHMRKLRDLLLASLGRRLPPGTLS---RVHGPSDVARRLPNTLSIAVDGIRAAPLLKRIGDRFAASAGAACHSKPADGSAAADCPKISAVLRAMGVPPSLAVGTIRLSVGR 380          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig832.16504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEU7_ECTSI3.230e-8780.12Cysteine desulfurase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A2P6TKZ5_CHLSO4.060e-7559.33Cysteine desulfurase n=1 Tax=Chlorella sorokiniana... [more]
E1ZDB8_CHLVA9.650e-6957.14Aminotran_5 domain-containing protein n=1 Tax=Chlo... [more]
A0A2P6V8I3_9CHLO3.220e-6756.46Cysteine desulfurase isoform A n=1 Tax=Micractiniu... [more]
A0A7S4C1G4_CHRCT5.170e-6655.66Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A4S300_OSTLU2.600e-6456.36Aminotran_5 domain-containing protein n=2 Tax=Ostr... [more]
R1CHP5_EMIHU4.540e-6355.45Cysteine desulfurase NFS1 n=1 Tax=Emiliania huxley... [more]
D8U8R1_VOLCA7.230e-6251.71Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
C1EHB0_MICCC1.080e-6153.70Aminotran_5 domain-containing protein (Fragment) n... [more]
A0A836CMI1_9STRA1.860e-6151.79Pyridoxal phosphate-dependent transferase n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig832contigS-dermatodea_contig832:319..2672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score227.3
Seed ortholog evalue6.9e-57
Seed eggNOG ortholog554065.XP_005848297.1
KEGG rclassRC01789,RC02313
KEGG koko:K04487
KEGG ReactionR07460,R11528,R11529
KEGG Pathwayko00730,ko01100,ko04122,map00730,map01100,map04122
EggNOG free text desc.Aminotransferase class-V
EggNOG OGs34H8Y@3041,37MHQ@33090,COG1104@1,KOG1549@2759
EC2.8.1.7
COG Functional cat.E
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02048,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncysteine desulfurase
Ec32 orthologEc-21_005640.1
Exons4
Model size630
Cds size630
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig832.16504.1prot_S-dermatodea_contig832.16504.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig832 319..2672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.2598019-CDS-S-dermatodea_contig832:318..4291622925335.2598019-CDS-S-dermatodea_contig832:318..429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig832 319..429 +
1694079863.3223944-CDS-S-dermatodea_contig832:318..4291694079863.3223944-CDS-S-dermatodea_contig832:318..429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig832 319..429 +
1622925335.2705252-CDS-S-dermatodea_contig832:1098..12901622925335.2705252-CDS-S-dermatodea_contig832:1098..1290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig832 1099..1290 +
1694079863.3332973-CDS-S-dermatodea_contig832:1098..12901694079863.3332973-CDS-S-dermatodea_contig832:1098..1290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig832 1099..1290 +
1622925335.2828915-CDS-S-dermatodea_contig832:1792..19841622925335.2828915-CDS-S-dermatodea_contig832:1792..1984Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig832 1793..1984 +
1694079863.3439882-CDS-S-dermatodea_contig832:1792..19841694079863.3439882-CDS-S-dermatodea_contig832:1792..1984Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig832 1793..1984 +
1622925335.2958028-CDS-S-dermatodea_contig832:2537..26721622925335.2958028-CDS-S-dermatodea_contig832:2537..2672Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig832 2538..2672 +
1694079863.3547876-CDS-S-dermatodea_contig832:2537..26721694079863.3547876-CDS-S-dermatodea_contig832:2537..2672Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig832 2538..2672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig832.16504.1

>prot_S-dermatodea_contig832.16504.1 ID=prot_S-dermatodea_contig832.16504.1|Name=mRNA_S-dermatodea_contig832.16504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=210bp
HQVGSVQPIEQIAGACRRRGILCHTDAAQSIGKVSVKVRDLGVDMLTIVG
HKFGAPKGVAALFVRRGLALPPMVHGGGQEAGRRAGTENVLLISGMGKAA
EVVNFELDRLSQHLSVMRERLLEHLLSANLADEVRVHGPRNPSMRLPNTL
SIGIPGLEARILLEKLSETVAASAGSACHAGGTTMSGVLQAMGVDNSTGF
GTLRFSVGR*
back to top

mRNA from alignment at S-dermatodea_contig832:319..2672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig832.16504.1 ID=mRNA_S-dermatodea_contig832.16504.1|Name=mRNA_S-dermatodea_contig832.16504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2354bp|location=Sequence derived from alignment at S-dermatodea_contig832:319..2672+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATCAGGTTGGCTCTGTTCAGCCCATCGAGCAGATCGCCGGGGCGTGTCG ACGTCGGGGTATTCTGTGCCACACAGACGCGGCTCAGAGCATCGGCAAGG TCTCGGTCAAGGTGCGGAGTTCTGATGCCGTCTCTGTCACCGTATGTCTT CTTCCTCACCTCCATATCGATCTTCCCGGCAGTTTGGGCGCGTTGTCGTC TTCGTTGCTCAAACACGCTATGTGTAGGTCGCACTGCCACGGCCGTGTCT ACTGCGGATCTACCGTACTGGTGTATTATTTACTCCGAGAGTCCACTGAG AAAACGCAAGGAGGCTCCAAACGTAAACGACTGCAACGGTCCTAAACGCG TGGATATACACTCCTCTGCCGCATGCAAAAACTGGAGGTGGCGTCAAAAG GGGTATTCACTCAAAGGGGGTCCGTCTGGCACCTGCGTTCTGGCCACCAT GGTGATCGCATGATGATACATCGTTGGCAGTATCGCATGTCGTTTGGACA TAAAACGGCTTCACTGATCGGACAGGGACAGCGACCCCGTAAACCTGTGC CGCAGCACATATTTTGTGCCGGGCGGAAAAAAACACCGCGAAAAAATTGA GTTTCATGATGCGAGAGTATATTATCTCGCCATTCCCAGACCAACCCGGC ACACCACTCTCTCCGGTAGGATTTGCTCTCCGTGCCTACTCCCCACCCTC ACTCTCTCGTTGACCCCGGTGTCCGGGGTATCCTCTGCTCCCGGCACGCT GCCGAATTACACATTTTTGGACGCTGAAAGGTGCGAGACCTTGGGGTGGA CATGCTTACCATCGTCGGGCACAAGTTCGGCGCACCGAAGGGCGTGGCCG CTCTTTTCGTGCGACGAGGGCTAGCCCTTCCCCCGATGGTGCACGGCGGC GGCCAAGAGGCGGGCAGGAGAGCCGGAACCGAGAATGTCTTGCTGATATC TGGGATGGGAAAGGCGGCGGAGGTGCGGCATGGGGGGGGGGGGGGGGGCA AGGGGCCATATGTGCGCGTCTGGGCCGATGGGTCGGGAGAAAGTTGGGCC AAAACTTTCTTTGCGTCGCCTCAAGTTTACAGTTTACAAACTTGCTGGTT ATCTCCACGCTCACGTACCTTCGCGTAGCAACGTCTCATGTTGCCCGCTG GCACCGATCTGACGGCGGATGTTCACGCGGGTTTGGGGGTCTGTTTTCGG TTGGGGGAAAGACGGGGAGAGGCGCCTATGCAGAATTACAAGCATTGCCC CCGCCTTTTATGGTTTCCGTTCGGCTCTTCAGGGGCTTATATATGGCACG CTCTCTACGGACTTGTTGATGGCACCTGAAACCGAGAAACAACTCTAGGC TGTTCCTTTAATCAGCCTTGCCCCCTAGCAAGTTCTCCCTCCGTGTGCCG CAACAACGTACGCGCACAAAATGGAACCCCCGCCCCCCCCACCGCGCTGT GCAATGTCTGCACGACGATGGCAGGTTGTTAACTTCGAGCTTGATCGATT ATCGCAACACCTTTCGGTGATGCGTGAGCGCCTATTGGAACACCTGCTTT CTGCGAACTTGGCGGATGAGGTGCGAGTCCACGGTCCCCGAAACCCGTCC ATGCGTCTGCCCAACACCCTGAGTATTGGCATTCCTGGCCTGGAGGCCCG CATCCTGTTGGAGAAGGTGAGAGGTGTGGAGGATGGAAGCACGTTTTCTT CCCATGGCATTGCGTCATTCTGGGTAATGCAGTTGTGGTACGCTTTCTGG CGTCTGTGTTTTGCTTCGGTTGAGTGTGTTTGGTCGCTTCGACGGAGGGG GACAAGGCGCCGGACTGGCGAGAACCGCGATCCCTCGATTTTTTGTAGTT GTTCTCGTCTTTGCGATGTCCTACGCTGCGGTTGGTGTTAACCTCTCTGT CTTTCTCGGGTGCATGACGACCCATGCGCAGATGAGTGTAGCTCGCCCTA CGGTTGGCGATTTTTTCCCACTGTACACGGTAAAACGCCATCACGTGCGG CTACGGTAAGCTGTTCGCGGGACTTACCGTACGCCAGGGCGTGCACCTCG AATGCCACCAACTAGGCCTGTGCAAGTTTATACAAGTGACGATAAACTGG CACACGACCACAGGCCTGAATCCCAAACCTTCGCGTGCGCGAAGTAAGTA GACAGGGATGTCCCATGACTTTTCCGCCGCACCGTCTGCCACAACCCTGT GATCCTTGGAACGCTGCAGCTTTCAGAAACGGTGGCCGCATCTGCGGGAT CGGCGTGCCACGCCGGTGGAACGACGATGTCGGGAGTTTTGCAGGCCATG GGGGTCGACAATTCCACCGGTTTCGGGACTCTCAGATTTTCGGTGGGAAG GTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig832:319..2672+

>mRNA_S-dermatodea_contig832.16504.1 ID=mRNA_S-dermatodea_contig832.16504.1|Name=mRNA_S-dermatodea_contig832.16504.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at S-dermatodea_contig832:319..2672+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATCAGGTTGGCTCTGTTCAGCCCATCGAGCAGATCGCCGGGGCGTGTCG
ACGTCGGGGTATTCTGTGCCACACAGACGCGGCTCAGAGCATCGGCAAGG
TCTCGGTCAAGCATCAGGTTGGCTCTGTTCAGCCCATCGAGCAGATCGCC
GGGGCGTGTCGACGTCGGGGTATTCTGTGCCACACAGACGCGGCTCAGAG
CATCGGCAAGGTCTCGGTCAAGGTGCGAGACCTTGGGGTGGACATGCTTA
CCATCGTCGGGCACAAGTTCGGCGCACCGAAGGGCGTGGCCGCTCTTTTC
GTGCGACGAGGGCTAGCCCTTCCCCCGATGGTGCACGGCGGCGGCCAAGA
GGCGGGCAGGAGAGCCGGAACCGAGAATGTCTTGCTGATATCTGGGATGG
GAAAGGCGGCGGAGGTGCGAGACCTTGGGGTGGACATGCTTACCATCGTC
GGGCACAAGTTCGGCGCACCGAAGGGCGTGGCCGCTCTTTTCGTGCGACG
AGGGCTAGCCCTTCCCCCGATGGTGCACGGCGGCGGCCAAGAGGCGGGCA
GGAGAGCCGGAACCGAGAATGTCTTGCTGATATCTGGGATGGGAAAGGCG
GCGGAGGTTGTTAACTTCGAGCTTGATCGATTATCGCAACACCTTTCGGT
GATGCGTGAGCGCCTATTGGAACACCTGCTTTCTGCGAACTTGGCGGATG
AGGTGCGAGTCCACGGTCCCCGAAACCCGTCCATGCGTCTGCCCAACACC
CTGAGTATTGGCATTCCTGGCCTGGAGGCCCGCATCCTGTTGGAGAAGGT
TGTTAACTTCGAGCTTGATCGATTATCGCAACACCTTTCGGTGATGCGTG
AGCGCCTATTGGAACACCTGCTTTCTGCGAACTTGGCGGATGAGGTGCGA
GTCCACGGTCCCCGAAACCCGTCCATGCGTCTGCCCAACACCCTGAGTAT
TGGCATTCCTGGCCTGGAGGCCCGCATCCTGTTGGAGAAGCTTTCAGAAA
CGGTGGCCGCATCTGCGGGATCGGCGTGCCACGCCGGTGGAACGACGATG
TCGGGAGTTTTGCAGGCCATGGGGGTCGACAATTCCACCGGTTTCGGGAC
TCTCAGATTTTCGGTGGGAAGGTGACTTTCAGAAACGGTGGCCGCATCTG
CGGGATCGGCGTGCCACGCCGGTGGAACGACGATGTCGGGAGTTTTGCAG
GCCATGGGGGTCGACAATTCCACCGGTTTCGGGACTCTCAGATTTTCGGT
GGGAAGGTGA
back to top