mRNA_S-dermatodea_contig83175.16500.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83175.16500.1
Unique NamemRNA_S-dermatodea_contig83175.16500.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: A0A6H5J7S9_9PHAE (FCP1 homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7S9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 RYRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            +YRLYRDACM+LEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQ+ N
Sbjct:  443 KYRLYRDACMALEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQIDN 488
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: A0A836CBU7_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.710e-17
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    4 YRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            +RLYRDAC+ ++GNYLKDLNVLGRDL +VAIVDNSPYAY +Q+ N
Sbjct:  126 HRLYRDACLQVDGNYLKDLNVLGRDLRRVAIVDNSPYAYAYQLAN 170
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: A0A081AID8_PHYPR (FCP1 homology domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A081AID8_PHYPR)

HSP 1 Score: 76.6 bits (187), Expect = 7.560e-17
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    4 YRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            YRLYRD C+ + GNYLKDLNVLGRDLSKV +VDNSP+A+G+QV N
Sbjct:   21 YRLYRDDCLDVFGNYLKDLNVLGRDLSKVLLVDNSPHAFGYQVNN 65
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: A0A7S2V5C9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5C9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.590e-16
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 RYRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            +YRL+RDAC+ +EGN+LKDL VLGR+LS+V ++DNSPYAYG+QV N
Sbjct:   94 QYRLFRDACLPVEGNFLKDLGVLGRELSQVVLIDNSPYAYGYQVDN 139
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: A0A7S3DTC4_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DTC4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.590e-16
Identity = 33/46 (71.74%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 RYRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            ++RL+R++CM++EGN+LKDLNVLGRDLSK  IVDNSP+A+GFQV N
Sbjct:   90 QHRLFRESCMAVEGNFLKDLNVLGRDLSKTVIVDNSPHAFGFQVDN 135
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: A0A0P1AH45_PLAHL (Nuclear lim factor interactor-interacting protein hyphal n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AH45_PLAHL)

HSP 1 Score: 79.0 bits (193), Expect = 6.160e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 RYRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            RYRLYRD C+ + GNYLKDLNVLGRDLSKV +VDNSP+A+G+QV N
Sbjct:  287 RYRLYRDDCLDVFGNYLKDLNVLGRDLSKVVLVDNSPHAFGYQVNN 332
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: A0A3R7AQT4_9STRA (FCP1 homology domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AQT4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.890e-16
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 RYRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            R+RLYRD C+ ++GNYLKDLNVLGRDL+ V ++DNSP+A+G+QV N
Sbjct:   60 RHRLYRDHCLPVDGNYLKDLNVLGRDLAHVLLIDNSPHAFGYQVTN 105
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: H9W3Z0_PINTA (FCP1 homology domain-containing protein (Fragment) n=3 Tax=Pinus subgen. Pinus TaxID=139271 RepID=H9W3Z0_PINTA)

HSP 1 Score: 74.3 bits (181), Expect = 1.020e-15
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 RYRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            R+R+YR++C+ +EGNYLKDL VLGRDL++VAI+DNSP A+GFQV N
Sbjct:   72 RHRVYRESCVFVEGNYLKDLTVLGRDLAQVAIIDNSPQAFGFQVDN 117
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: A0A7S4VQP9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VQP9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.030e-15
Identity = 30/46 (65.22%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 RYRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            ++R++R+AC+ +EGNYLKDLNVLGRDL K  +VDNSP+A+G+QV N
Sbjct:   18 KHRMFREACLPVEGNYLKDLNVLGRDLRKAVLVDNSPHAFGYQVDN 63
[Close]
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Match: D8SWY6_SELML (FCP1 homology domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SWY6_SELML)

HSP 1 Score: 76.6 bits (187), Expect = 1.090e-15
Identity = 33/46 (71.74%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 RYRLYRDACMSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCN 138
            R+R++RD+C+ ++GNYLKDL++LGRDLSKVAIVDNSP A+GFQV N
Sbjct:  140 RHRIFRDSCVYVDGNYLKDLSILGRDLSKVAIVDNSPQAFGFQVDN 185
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83175.16500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7S9_9PHAE1.120e-2091.30FCP1 homology domain-containing protein n=2 Tax=Ec... [more]
A0A836CBU7_9STRA4.710e-1775.56HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A081AID8_PHYPR7.560e-1775.56FCP1 homology domain-containing protein n=1 Tax=Ph... [more]
A0A7S2V5C9_9STRA2.590e-1669.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3DTC4_9STRA2.590e-1671.74Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A0P1AH45_PLAHL6.160e-1676.09Nuclear lim factor interactor-interacting protein ... [more]
A0A3R7AQT4_9STRA7.890e-1667.39FCP1 homology domain-containing protein n=1 Tax=Ap... [more]
H9W3Z0_PINTA1.020e-1569.57FCP1 homology domain-containing protein (Fragment)... [more]
A0A7S4VQP9_9STRA1.030e-1565.22Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D8SWY6_SELML1.090e-1571.74FCP1 homology domain-containing protein n=2 Tax=Se... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83175contigS-dermatodea_contig83175:329..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue6.2e-12
Seed eggNOG ortholog2880.D8LMF9
KEGG koko:K17616
GOsGO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size117
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.092642-UTR-S-dermatodea_contig83175:328..3551622925335.092642-UTR-S-dermatodea_contig83175:328..355Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83175 329..355 +
1694079863.2760115-UTR-S-dermatodea_contig83175:328..3551694079863.2760115-UTR-S-dermatodea_contig83175:328..355Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83175 329..355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.1086392-CDS-S-dermatodea_contig83175:355..4721622925335.1086392-CDS-S-dermatodea_contig83175:355..472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83175 356..472 +
1694079863.2868776-CDS-S-dermatodea_contig83175:355..4721694079863.2868776-CDS-S-dermatodea_contig83175:355..472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83175 356..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83175.16500.1prot_S-dermatodea_contig83175.16500.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83175 356..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83175.16500.1

>prot_S-dermatodea_contig83175.16500.1 ID=prot_S-dermatodea_contig83175.16500.1|Name=mRNA_S-dermatodea_contig83175.16500.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=39bp
MSLEGNYLKDLNVLGRDLSKVAIVDNSPYAYGFQVCNW*
back to top

mRNA from alignment at S-dermatodea_contig83175:329..472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83175.16500.1 ID=mRNA_S-dermatodea_contig83175.16500.1|Name=mRNA_S-dermatodea_contig83175.16500.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at S-dermatodea_contig83175:329..472+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATATCGGCTATACCGGGATGCTTGCATGAGCTTGGAGGGCAACTACCT
GAAGGACCTGAACGTGCTTGGACGTGACTTGTCGAAGGTTGCCATTGTCG
ACAACTCTCCCTACGCTTACGGGTTTCAGGTGTGTAATTGGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig83175:329..472+

>mRNA_S-dermatodea_contig83175.16500.1 ID=mRNA_S-dermatodea_contig83175.16500.1|Name=mRNA_S-dermatodea_contig83175.16500.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig83175:329..472+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCTTGGAGGGCAACTACCTGAAGGACCTGAACGTGCTTGGACGTGA
CTTGTCGAAGGTTGCCATTGTCGACAACTCTCCCTACGCTTACGGGTTTC
AGGTGTGTAATTGGTGAATGAGCTTGGAGGGCAACTACCTGAAGGACCTG
AACGTGCTTGGACGTGACTTGTCGAAGGTTGCCATTGTCGACAACTCTCC
CTACGCTTACGGGTTTCAGGTGTGTAATTGGTGA
back to top