mRNA_S-dermatodea_contig83134.16497.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83134.16497.1
Unique NamemRNA_S-dermatodea_contig83134.16497.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: D8LIP7_ECTSI (DEAD box helicase DEAD/DEAH box helicase-like protein (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.290e-26
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            VEREFNRIAPELSSLAVYGGTA GPQIGEMRRGVDI+VGTPGRIIDHIEQGNLNL
Sbjct:  293 VEREFNRIAPELSSLAVYGGTAQGPQIGEMRRGVDIIVGTPGRIIDHIEQGNLNL 347
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: Q1J0S9_DEIGD (RNA helicase n=5 Tax=Deinococcus TaxID=1298 RepID=Q1J0S9_DEIGD)

HSP 1 Score: 77.8 bits (190), Expect = 3.000e-15
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V  EF++  P+LS++ VYGG A GPQ   +RRGVD+VVGTPGR+IDH+E+GNL+L
Sbjct:   92 VAEEFSKSGPQLSTVTVYGGAAYGPQENALRRGVDVVVGTPGRLIDHLERGNLDL 146
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: A0A345IGB7_9DEIO (RNA helicase n=7 Tax=Deinococcus TaxID=1298 RepID=A0A345IGB7_9DEIO)

HSP 1 Score: 77.0 bits (188), Expect = 5.600e-15
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V  EF++ AP LS++ VYGG A GPQ   +RRGVD+VVGTPGR+IDH+E+GNL+L
Sbjct:   87 VADEFSKSAPGLSTVTVYGGAAYGPQENALRRGVDVVVGTPGRLIDHLERGNLDL 141
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: A0A1W1UBN3_9DEIO (RNA helicase n=1 Tax=Deinococcus hopiensis KR-140 TaxID=695939 RepID=A0A1W1UBN3_9DEIO)

HSP 1 Score: 74.7 bits (182), Expect = 3.640e-14
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V  EF++ AP L+++ VYGG    PQ   MRRGVD+VVGTPGR+IDH+E+GNL+L
Sbjct:   87 VAEEFSKSAPSLTTVTVYGGAPYAPQENSMRRGVDVVVGTPGRLIDHLERGNLDL 141
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: A0A2I9D1Y6_9DEIO (RNA helicase n=2 Tax=Deinococcus TaxID=1298 RepID=A0A2I9D1Y6_9DEIO)

HSP 1 Score: 74.7 bits (182), Expect = 3.640e-14
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V  EF++    L+++ VYGG + GPQ G +RRGVD+VVGTPGRIIDH+E+GNL+L
Sbjct:   87 VAEEFSKSGQHLATVTVYGGASYGPQEGALRRGVDVVVGTPGRIIDHLERGNLDL 141
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: UPI001665C9B8 (DEAD/DEAH box helicase n=2 Tax=Deinococcus TaxID=1298 RepID=UPI001665C9B8)

HSP 1 Score: 73.6 bits (179), Expect = 9.290e-14
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V  EF++  P + +L +YGG A GPQ   ++RGVD+VVGTPGRI+DHIE+GNL+L
Sbjct:   87 VSEEFSKSGPAIETLTIYGGAAYGPQEKALQRGVDVVVGTPGRIMDHIERGNLSL 141
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: E8UAP2_DEIML (RNA helicase n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) TaxID=709986 RepID=E8UAP2_DEIML)

HSP 1 Score: 73.2 bits (178), Expect = 1.270e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V  EF + APEL +L VYGG A GPQ   +  GVD++VGTPGR+IDHIE+GNL L
Sbjct:   87 VAEEFKKSAPELLTLTVYGGAAYGPQEKALYGGVDVIVGTPGRVIDHIERGNLKL 141
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: A0A072NMB1_9DEIO (RNA helicase n=4 Tax=Deinococcus TaxID=1298 RepID=A0A072NMB1_9DEIO)

HSP 1 Score: 73.2 bits (178), Expect = 1.270e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V  EF++    L+++ VYGG A GPQ   +RRGVD+VVGTPGRIIDH+E+GNL+L
Sbjct:   92 VAEEFSKSGQALTTVTVYGGAAYGPQENALRRGVDVVVGTPGRIIDHLERGNLDL 146
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: A0A2Z3JHC3_9DEIO (RNA helicase n=2 Tax=Deinococcus TaxID=1298 RepID=A0A2Z3JHC3_9DEIO)

HSP 1 Score: 72.8 bits (177), Expect = 1.730e-13
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V   FN+ A EL  L +YGG A GPQ   + RGVDIVVGTPGRIIDHIE+GNL L
Sbjct:   87 VAEHFNKTAGELEVLTIYGGAAYGPQEKALSRGVDIVVGTPGRIIDHIERGNLVL 141
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BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Match: UPI001664B109 (DEAD/DEAH box helicase n=1 Tax=Deinococcus aquiradiocola TaxID=393059 RepID=UPI001664B109)

HSP 1 Score: 72.8 bits (177), Expect = 1.730e-13
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQGNLNL 165
            V  EF++  P    L +YGG A GPQ   ++RGVDIVVGTPGRIIDHIE+GNL L
Sbjct:   87 VSEEFSKSGPAFEILTIYGGAAYGPQEKALQRGVDIVVGTPGRIIDHIERGNLRL 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83134.16497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP7_ECTSI1.290e-2696.36DEAD box helicase DEAD/DEAH box helicase-like prot... [more]
Q1J0S9_DEIGD3.000e-1561.82RNA helicase n=5 Tax=Deinococcus TaxID=1298 RepID=... [more]
A0A345IGB7_9DEIO5.600e-1563.64RNA helicase n=7 Tax=Deinococcus TaxID=1298 RepID=... [more]
A0A1W1UBN3_9DEIO3.640e-1460.00RNA helicase n=1 Tax=Deinococcus hopiensis KR-140 ... [more]
A0A2I9D1Y6_9DEIO3.640e-1460.00RNA helicase n=2 Tax=Deinococcus TaxID=1298 RepID=... [more]
UPI001665C9B89.290e-1458.18DEAD/DEAH box helicase n=2 Tax=Deinococcus TaxID=1... [more]
E8UAP2_DEIML1.270e-1361.82RNA helicase n=1 Tax=Deinococcus maricopensis (str... [more]
A0A072NMB1_9DEIO1.270e-1360.00RNA helicase n=4 Tax=Deinococcus TaxID=1298 RepID=... [more]
A0A2Z3JHC3_9DEIO1.730e-1365.45RNA helicase n=2 Tax=Deinococcus TaxID=1298 RepID=... [more]
UPI001664B1091.730e-1361.82DEAD/DEAH box helicase n=1 Tax=Deinococcus aquirad... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83134contigS-dermatodea_contig83134:214..402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue4.8e-22
Seed eggNOG ortholog2880.D8LIP7
KEGG koko:K16911
KEGG Pathwayko01110,map01110
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.9063897-CDS-S-dermatodea_contig83134:213..4021622925334.9063897-CDS-S-dermatodea_contig83134:213..402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83134 214..402 -
1694079863.1499512-CDS-S-dermatodea_contig83134:213..4021694079863.1499512-CDS-S-dermatodea_contig83134:213..402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83134 214..402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83134.16497.1prot_S-dermatodea_contig83134.16497.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83134 214..402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83134.16497.1

>prot_S-dermatodea_contig83134.16497.1 ID=prot_S-dermatodea_contig83134.16497.1|Name=mRNA_S-dermatodea_contig83134.16497.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
VEREFNRIAPELSSLAVYGGTASGPQIGEMRRGVDIVVGTPGRIIDHIEQ
GNLNLVRGRVLT*
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mRNA from alignment at S-dermatodea_contig83134:214..402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83134.16497.1 ID=mRNA_S-dermatodea_contig83134.16497.1|Name=mRNA_S-dermatodea_contig83134.16497.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at S-dermatodea_contig83134:214..402- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGCGCGAGTTCAATCGCATCGCCCCGGAGCTTTCTTCTCTCGCGGT
CTACGGCGGAACCGCTTCAGGGCCTCAGATCGGAGAGATGCGTCGCGGCG
TTGACATCGTCGTGGGGACGCCGGGACGGATCATCGACCACATCGAGCAA
GGAAACCTTAACCTGGTGAGAGGTCGGGTTTTGACATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83134:214..402-

>mRNA_S-dermatodea_contig83134.16497.1 ID=mRNA_S-dermatodea_contig83134.16497.1|Name=mRNA_S-dermatodea_contig83134.16497.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig83134:214..402- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGCGCGAGTTCAATCGCATCGCCCCGGAGCTTTCTTCTCTCGCGGT
CTACGGCGGAACCGCTTCAGGGCCTCAGATCGGAGAGATGCGTCGCGGCG
TTGACATCGTCGTGGGGACGCCGGGACGGATCATCGACCACATCGAGCAA
GGAAACCTTAACCTGGTGAGAGGTCGGGTTTTGACATGAGTGGAGCGCGA
GTTCAATCGCATCGCCCCGGAGCTTTCTTCTCTCGCGGTCTACGGCGGAA
CCGCTTCAGGGCCTCAGATCGGAGAGATGCGTCGCGGCGTTGACATCGTC
GTGGGGACGCCGGGACGGATCATCGACCACATCGAGCAAGGAAACCTTAA
CCTGGTGAGAGGTCGGGTTTTGACATGA
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