prot_S-dermatodea_contig83082.16495.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig83082.16495.1
Unique Nameprot_S-dermatodea_contig83082.16495.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length43
Homology
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BLAST of mRNA_S-dermatodea_contig83082.16495.1 vs. uniprot
Match: D7FNU5_ECTSI (Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.710e-12
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 
Query:    1 GGFGEATSGQVHFAEISTPILERVIQFVYYKV 32
            GGFGEA SGQVHFAEISTPILE+VIQFVYYKV
Sbjct:   38 GGFGEAASGQVHFAEISTPILEKVIQFVYYKV 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83082.16495.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNU5_ECTSI2.710e-1293.75Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 3..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83082contigS-dermatodea_contig83082:492..620 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83082.16495.1mRNA_S-dermatodea_contig83082.16495.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig83082 492..620 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig83082.16495.1 ID=prot_S-dermatodea_contig83082.16495.1|Name=mRNA_S-dermatodea_contig83082.16495.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
GGFGEATSGQVHFAEISTPILERVIQFVYYKVTGFPGVQSPVH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011333SKP1/BTB/POZ_sf