mRNA_S-dermatodea_contig83082.16495.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83082.16495.1
Unique NamemRNA_S-dermatodea_contig83082.16495.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83082.16495.1 vs. uniprot
Match: D7FNU5_ECTSI (Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.710e-12
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 GGFGEATSGQVHFAEISTPILERVIQFVYYKV 96
            GGFGEA SGQVHFAEISTPILE+VIQFVYYKV
Sbjct:   38 GGFGEAASGQVHFAEISTPILEKVIQFVYYKV 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83082.16495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNU5_ECTSI2.710e-1293.75Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83082contigS-dermatodea_contig83082:492..620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog2880.D7FNU5
Preferred nameTCEB1
KEGG koko:K03872
KEGG Pathwayko04066,ko04120,ko05200,ko05211,map04066,map04120,map05200,map05211
KEGG ModuleM00383,M00388
GOsGO:0000003,GO:0000151,GO:0000153,GO:0000280,GO:0000578,GO:0000819,GO:0001666,GO:0002009,GO:0002165,GO:0003002,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007135,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0008023,GO:0008150,GO:0008152,GO:0008595,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009948,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016344,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019904,GO:0022402,GO:0022414,GO:0030891,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031461,GO:0031462,GO:0031463,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033554,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035282,GO:0035295,GO:0036211,GO:0036293,GO:0036294,GO:0040020,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043618,GO:0043620,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045132,GO:0045144,GO:0045787,GO:0045836,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051303,GO:0051305,GO:0051321,GO:0051445,GO:0051446,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0051759,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060429,GO:0060562,GO:0061418,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070449,GO:0070482,GO:0070887,GO:0070911,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097659,GO:0098687,GO:0098813,GO:0140013,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901987,GO:1901989,GO:1901993,GO:1901995,GO:1902099,GO:1902101,GO:1902102,GO:1902104,GO:1902494,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:1905132,GO:1905134,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2000241,GO:2000243,GO:2001141
EggNOG free text desc.positive regulation of transcription elongation from RNA polymerase II promoter
EggNOG OGsKOG3473@1,KOG3473@2759
Ec32 ortholog descriptionRNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C
Ec32 orthologEc-12_003330.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.8449454-CDS-S-dermatodea_contig83082:491..6201622925334.8449454-CDS-S-dermatodea_contig83082:491..620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83082 492..620 -
1694079863.12191-CDS-S-dermatodea_contig83082:491..6201694079863.12191-CDS-S-dermatodea_contig83082:491..620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83082 492..620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83082.16495.1prot_S-dermatodea_contig83082.16495.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83082 492..620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83082.16495.1

>prot_S-dermatodea_contig83082.16495.1 ID=prot_S-dermatodea_contig83082.16495.1|Name=mRNA_S-dermatodea_contig83082.16495.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
GGFGEATSGQVHFAEISTPILERVIQFVYYKVTGFPGVQSPVH
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mRNA from alignment at S-dermatodea_contig83082:492..620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83082.16495.1 ID=mRNA_S-dermatodea_contig83082.16495.1|Name=mRNA_S-dermatodea_contig83082.16495.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at S-dermatodea_contig83082:492..620- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGTTTCGGCGAGGCGACATCGGGACAGGTTCATTTCGCGGAGATTTC
GACTCCCATTTTGGAGAGGGTAATCCAGTTTGTCTACTACAAGGTGACTG
GTTTTCCTGGAGTTCAGTCCCCTGTGCAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig83082:492..620-

>mRNA_S-dermatodea_contig83082.16495.1 ID=mRNA_S-dermatodea_contig83082.16495.1|Name=mRNA_S-dermatodea_contig83082.16495.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig83082:492..620- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGTTTCGGCGAGGCGACATCGGGACAGGTTCATTTCGCGGAGATTTC
GACTCCCATTTTGGAGAGGGTAATCCAGTTTGTCTACTACAAGGTGACTG
GTTTTCCTGGAGTTCAGTCCCCTGTGCATGGCGGTTTCGGCGAGGCGACA
TCGGGACAGGTTCATTTCGCGGAGATTTCGACTCCCATTTTGGAGAGGGT
AATCCAGTTTGTCTACTACAAGGTGACTGGTTTTCCTGGAGTTCAGTCCC
CTGTGCAT
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