mRNA_S-dermatodea_contig8305.16493.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8305.16493.1
Unique NamemRNA_S-dermatodea_contig8305.16493.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: D8LF95_ECTSI (H(+)-exporting diphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF95_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.350e-20
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK
Sbjct:  621 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 665
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: A0A835YSH3_9STRA (H(+)-exporting diphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.970e-18
Identity = 40/45 (88.89%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            GGMASGVQVAISMSNTGGAWDNAKKY+E+ATP+S+L+GKGSDIHK
Sbjct:  639 GGMASGVQVAISMSNTGGAWDNAKKYVEKATPESELRGKGSDIHK 683
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: A0A7S2A446_TRICV (H(+)-exporting diphosphatase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A446_TRICV)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-16
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            G + + VQ+AISMSN+GGAWDNAKKYIE+A+PDSDL+GKGSDIHK
Sbjct:   27 GALIAAVQLAISMSNSGGAWDNAKKYIEKASPDSDLKGKGSDIHK 71
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: W7TN19_9STRA (H(+)-exporting diphosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN19_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-15
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            GG+ SGVQ+A+SMSNTGGAWDNAKKYIE+ +P+ +LQGKGSDIHK
Sbjct:  668 GGLVSGVQLAVSMSNTGGAWDNAKKYIEKQSPEHELQGKGSDIHK 712
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: B8BUE1_THAPS (H(+)-exporting diphosphatase n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BUE1_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-15
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            G + + VQ+AISMSN+GGAWDNAKKYIE+ATPDSDL+GKGSDIHK
Sbjct:  574 GSLVAAVQLAISMSNSGGAWDNAKKYIEKATPDSDLKGKGSDIHK 618
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: A0A7S0AKW8_9STRA (H(+)-exporting diphosphatase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AKW8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.700e-15
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            G + + VQ+AISMSN+GGAWDNAKKYIERA+PDS+L+GKGSDIHK
Sbjct:  151 GSLIASVQLAISMSNSGGAWDNAKKYIERASPDSELKGKGSDIHK 195
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: A0A6S8W7J7_9STRA (H(+)-exporting diphosphatase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8W7J7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.860e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            G + + VQ+AISMSN+GGAWDNAKKYIE+A PDSDLQGKGSDIHK
Sbjct:  412 GSLIASVQLAISMSNSGGAWDNAKKYIEKAAPDSDLQGKGSDIHK 456
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: A0A7S3VBL0_9STRA (H(+)-exporting diphosphatase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBL0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.880e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            G + + VQ+AISMSN+GGAWDNAKKYIE+A PDSDLQGKGSDIHK
Sbjct:  754 GSLIASVQLAISMSNSGGAWDNAKKYIEKAAPDSDLQGKGSDIHK 798
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: B5Y460_PHATC (H(+)-exporting diphosphatase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y460_PHATC)

HSP 1 Score: 77.0 bits (188), Expect = 2.570e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            G + + VQ+AISMSN+GGAWDNAKKYIERA PDS+LQGKGSDIHK
Sbjct:  655 GSLIAAVQLAISMSNSGGAWDNAKKYIERAAPDSELQGKGSDIHK 699
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BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Match: A0A7S2Y359_9STRA (H(+)-exporting diphosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y359_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.510e-15
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 GGMASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK 135
            GG+ SGVQ+AISMSNTGGAWDNAKKYIE+A  +S+L+GKGSDIHK
Sbjct:  634 GGLVSGVQMAISMSNTGGAWDNAKKYIEKAPSNSELKGKGSDIHK 678
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8305.16493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF95_ECTSI1.350e-20100.00H(+)-exporting diphosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A835YSH3_9STRA1.970e-1888.89H(+)-exporting diphosphatase n=1 Tax=Tribonema min... [more]
A0A7S2A446_TRICV1.020e-1677.78H(+)-exporting diphosphatase n=1 Tax=Trieres chine... [more]
W7TN19_9STRA1.010e-1577.78H(+)-exporting diphosphatase n=2 Tax=Monodopsidace... [more]
B8BUE1_THAPS1.010e-1580.00H(+)-exporting diphosphatase n=2 Tax=Thalassiosira... [more]
A0A7S0AKW8_9STRA1.700e-1577.78H(+)-exporting diphosphatase n=1 Tax=Minutocellus ... [more]
A0A6S8W7J7_9STRA1.860e-1580.00H(+)-exporting diphosphatase n=1 Tax=Chaetoceros d... [more]
A0A7S3VBL0_9STRA1.880e-1580.00H(+)-exporting diphosphatase n=2 Tax=Chaetoceros d... [more]
B5Y460_PHATC2.570e-1580.00H(+)-exporting diphosphatase n=1 Tax=Phaeodactylum... [more]
A0A7S2Y359_9STRA3.510e-1580.00H(+)-exporting diphosphatase n=1 Tax=Fibrocapsa ja... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8305contigS-dermatodea_contig8305:666..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue2.7e-16
Seed eggNOG ortholog2880.D8LF95
Preferred nameAVP1
KEGG koko:K01507
KEGG Pathwayko00190,map00190
GOsGO:0000325,GO:0001101,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0009414,GO:0009415,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009651,GO:0009678,GO:0009705,GO:0009914,GO:0009926,GO:0009941,GO:0010008,GO:0010035,GO:0010248,GO:0010817,GO:0012505,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022804,GO:0022857,GO:0031090,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044434,GO:0044435,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0060918,GO:0065007,GO:0065008,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099402,GO:1901700
EggNOG free text desc.hydrogen-translocating pyrophosphatase activity
EggNOG OGs2QPJC@2759,COG3808@1
EC3.6.1.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size129
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.7211092-UTR-S-dermatodea_contig8305:665..6711622925334.7211092-UTR-S-dermatodea_contig8305:665..671Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8305 666..671 +
1694079863.0610445-UTR-S-dermatodea_contig8305:665..6711694079863.0610445-UTR-S-dermatodea_contig8305:665..671Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8305 666..671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.7346916-CDS-S-dermatodea_contig8305:671..8001622925334.7346916-CDS-S-dermatodea_contig8305:671..800Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8305 672..800 +
1694079863.0715442-CDS-S-dermatodea_contig8305:671..8001694079863.0715442-CDS-S-dermatodea_contig8305:671..800Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8305 672..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8305.16493.1prot_S-dermatodea_contig8305.16493.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8305 672..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8305.16493.1

>prot_S-dermatodea_contig8305.16493.1 ID=prot_S-dermatodea_contig8305.16493.1|Name=mRNA_S-dermatodea_contig8305.16493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
MASGVQVAISMSNTGGAWDNAKKYIERATPDSDLQGKGSDIHK
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mRNA from alignment at S-dermatodea_contig8305:666..800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8305.16493.1 ID=mRNA_S-dermatodea_contig8305.16493.1|Name=mRNA_S-dermatodea_contig8305.16493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig8305:666..800+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGCATGGCTTCTGGTGTACAGGTGGCCATCTCCATGTCCAACACTGG
CGGAGCCTGGGACAACGCCAAGAAGTACATCGAGAGGGCTACCCCGGACT
CCGACCTTCAGGGCAAGGGCTCCGATATCCACAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8305:666..800+

>mRNA_S-dermatodea_contig8305.16493.1 ID=mRNA_S-dermatodea_contig8305.16493.1|Name=mRNA_S-dermatodea_contig8305.16493.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig8305:666..800+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTTCTGGTGTACAGGTGGCCATCTCCATGTCCAACACTGGCGGAGC
CTGGGACAACGCCAAGAAGTACATCGAGAGGGCTACCCCGGACTCCGACC
TTCAGGGCAAGGGCTCCGATATCCACAAGATGGCTTCTGGTGTACAGGTG
GCCATCTCCATGTCCAACACTGGCGGAGCCTGGGACAACGCCAAGAAGTA
CATCGAGAGGGCTACCCCGGACTCCGACCTTCAGGGCAAGGGCTCCGATA
TCCACAAG
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