mRNA_S-dermatodea_contig83036.16491.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83036.16491.1
Unique NamemRNA_S-dermatodea_contig83036.16491.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: D8LFH9_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 9.210e-92
Identity = 136/146 (93.15%), Postives = 141/146 (96.58%), Query Frame = 1
Query:    1 MRGDLGLCRQIEQNNLVWGSVEGGEAIRQALLQPVEYKEDGESTRVKESSVRDALASLIGGEREVETPSGFIDMPSDAVIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEMAKSVCYAQAVKVTFEEVGVE 438
            MRGDLGLCRQIEQNNLV GSVEGGEAIRQALLQPVEY+EDGESTRVKESS R+ALASLIGGEREVETPSGFID PSDAVIEVKY+NRWK GLGQVLAYQSHYPRLARRLHLFA+IGDKDTDKYFEMAKSVCYA AVKVTFE+VGVE
Sbjct:    1 MRGDLGLCRQIEQNNLVRGSVEGGEAIRQALLQPVEYREDGESTRVKESSAREALASLIGGEREVETPSGFIDKPSDAVIEVKYHNRWKDGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEMAKSVCYAHAVKVTFEKVGVE 146          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 4.890e-53
Identity = 91/144 (63.19%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    1 MRGDLGLCRQIEQNNLVWGSVEGGEAIRQALLQPVEYKEDGESTRVKESSVRDALASLIGGEREVETPSGFIDMPSDA-VIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEMAKSVCYAQAVKVTFEEV 429
            M GDL L R IE+NNL W SV+GGE I++AL++P+++ E   S RV+E SVRDALA ++GG+ E ETP GFID+ SD  VIEVK+   WKHGLGQVL+YQ HYP L +RLHLFA IG K+TD+Y E AKS C + AVKVTFEEV
Sbjct:    6 MGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPIDHTEKYVSGRVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFAQIGCKNTDQYLEKAKSTCDSFAVKVTFEEV 149          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 9.030e-53
Identity = 95/138 (68.84%), Postives = 113/138 (81.88%), Query Frame = 1
Query:    1 MRGDLGLCRQIEQNNLVWGSVEGGEAIRQALLQPVEYKEDGESTRVKESSVRDALASLIGGEREVETPSGFIDMPSDA-VIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEMAKSVCYAQAVK 411
            M GDL LCRQIEQN L W  VEGGEAI+QALL+PV+YKE+  + RV+E  VRDALASL+GG  EVETPSG+ID+ S+  VIEVKY  +WK GLGQVLAYQSHYPRLARRLHLFA+ GD+DTDKY E+AK++ +  + K
Sbjct:  237 MGGDLSLCRQIEQNALGWNCVEGGEAIQQALLRPVKYKENCVTERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAHTGDRDTDKYCELAKAIAFKSSRK 374          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 7.430e-48
Identity = 81/127 (63.78%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 MRGDLGLCRQIEQNNLVWGSVEGGEAIRQALLQPVEYKEDGESTRVKESSVRDALASLIGGEREVETPSGFIDMPSDA-VIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEM 378
            M GDL L ++IEQNNL W SVEGG AI+QAL++P+EY+   +ST VKE  VRDALASL+GGE EVETP+G ID+ S   VIEVKY  +WKHGLGQVLAY   +P LA+RLHLFA+ G+  T KYF++
Sbjct:    5 MGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEVGTQKYFDL 131          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.110e-39
Identity = 78/115 (67.83%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 MRGDLGLCRQIEQNNLVWGSVEGGEAIRQALLQPVEYKEDGESTRVKESSVRDALASLIGGEREVETPSGFIDMPSDA-VIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAY 342
            M GDL LCRQIEQN L W  V+GGEAI+QALL+PV+  ED  + RV+E  VRDALA ++GG  EVETPSG+ID+ S+  VIEVKY   WK GLGQVL YQSHYPRL+RRLHLFA+
Sbjct:  671 MGGDLSLCRQIEQNALGWNCVDGGEAIQQALLRPVKNIEDCVTERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAH 785          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.420e-37
Identity = 77/121 (63.64%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   79 IRQALLQPVEYKEDGESTRVKESSVRDALASLIGGEREVETPSGFIDMPSDA-VIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEMAKSVCYAQAVKVTFEEVGVE 438
            + +AL + VEYK   E  +VKESSVRDALAS++GGE E ETP GFID+ SD  VIEVKY  +W+  LGQVLAYQ++YP LA+R+HLFA  G KDT+KY E  KSVC   AVKVTFEE  VE
Sbjct:  187 LMKALNRRVEYKP--ELFKVKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFAQTGKKDTEKYVESTKSVCDTHAVKVTFEECVVE 305          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: A0A6H5JDC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.580e-19
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1
Query:  151 VRDALASLIGGEREVETPSGFIDMPSDA-VIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEMAKSVC 393
            +R   A  + G+ EVETP G ID+ S   VIE+KYN +WKH LGQVL Y   YPRLA+RLHLFA+ G+  T   F++AK+VC
Sbjct:  234 LRRKSAETVDGQTEVETPVGIIDVLSKTEVIEMKYNKKWKHALGQVLDYHLFYPRLAKRLHLFAHGGEAGTSMDFDLAKAVC 315          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: A0A1Z4J7F1_9CYAN (Uncharacterized protein n=2 Tax=Scytonema TaxID=1203 RepID=A0A1Z4J7F1_9CYAN)

HSP 1 Score: 70.5 bits (171), Expect = 2.960e-12
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  142 ESSVRDALASLIGGEREVETPSGFIDMPSDA-VIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEMAKSVCYAQAVKVTFEEV 429
            E+ +R  L + +GGE EV T  G ID+ +++ VIE+K  N WK  LG++LAY + +P  ++ +HLF   G +D  K   +A   C+  AV VTFEEV
Sbjct:   94 EAKIRQRLRAELGGEMEVVTAVGRIDLLTESEVIEIKNINDWKEALGKILAYSAFFPEHSKCIHLF---GKQDLAK-LALATQTCWEFAVLVTFEEV 186          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: A0A1Z4QTV8_9NOST (Uncharacterized protein n=1 Tax=Cylindrospermum sp. NIES-4074 TaxID=2005457 RepID=A0A1Z4QTV8_9NOST)

HSP 1 Score: 70.5 bits (171), Expect = 3.070e-12
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  142 ESSVRDALASLIGGEREVETPSGFIDMPSDA-VIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEMAKSVCYAQAVKVTFEEVG 432
            E  VR++L S +GG+ EV T  G ID+ +++ +IEVK  N WK  LGQ+LAY + +P   +R+HLF Y      D    + +S C    V V+FE  G
Sbjct:   92 EQQVRNSLKSRLGGQIEVVTAVGRIDLLTESELIEVKAVNSWKEALGQILAYSAFFPEYQKRIHLFGYCTPDKAD----LIESTCLEFGVVVSFEVGG 185          
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Match: UPI001FB86E7D (MarR family transcriptional regulator n=1 Tax=Aetokthonos hydrillicola TaxID=1550245 RepID=UPI001FB86E7D)

HSP 1 Score: 70.1 bits (170), Expect = 3.770e-12
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  142 ESSVRDALASLIGGEREVETPSGFIDM-PSDAVIEVKYNNRWKHGLGQVLAYQSHYPRLARRLHLFAYIGDKDTDKYFEMAKSVCYAQAVKVTFEEV 429
            E  VR AL   +GG+ EV T  G ID+  S  VIE+K  N WK  LG++LAY + +P   +R+HLF   G  D  K   +A++ C   +V VTFEEV
Sbjct:   89 EEQVRAALLKEVGGQTEVITAVGRIDLLTSSEVIEIKNINDWKEALGKILAYSAFFPSHNKRIHLF---GRPDLTK-LALAQATCTEFSVTVTFEEV 181          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83036.16491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFH9_ECTSI9.210e-9293.15FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LP52_ECTSI4.890e-5363.19FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JJP2_9PHAE9.030e-5368.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G319_ECTSI7.430e-4863.78FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L5N7_9PHAE1.110e-3967.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L807_9PHAE4.420e-3763.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDC2_9PHAE6.580e-1954.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z4J7F1_9CYAN2.960e-1242.27Uncharacterized protein n=2 Tax=Scytonema TaxID=12... [more]
A0A1Z4QTV8_9NOST3.070e-1240.82Uncharacterized protein n=1 Tax=Cylindrospermum sp... [more]
UPI001FB86E7D3.770e-1244.33MarR family transcriptional regulator n=1 Tax=Aeto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83036contigS-dermatodea_contig83036:3..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.1
Seed ortholog evalue9.8e-10
Seed eggNOG ortholog221288.JH992899_gene5
EggNOG OGs1G9IK@1117,1JM7S@1189,29WTT@1,30IF6@2
Best tax levelStigonemataceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFirrV-1-A34
Ec32 orthologEc-04_002130.1
Exons1
Model size438
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.6508636-CDS-S-dermatodea_contig83036:2..4401622925334.6508636-CDS-S-dermatodea_contig83036:2..440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83036 3..440 -
1694079863.029737-CDS-S-dermatodea_contig83036:2..4401694079863.029737-CDS-S-dermatodea_contig83036:2..440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83036 3..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83036.16491.1prot_S-dermatodea_contig83036.16491.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83036 3..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83036.16491.1

>prot_S-dermatodea_contig83036.16491.1 ID=prot_S-dermatodea_contig83036.16491.1|Name=mRNA_S-dermatodea_contig83036.16491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=146bp
MRGDLGLCRQIEQNNLVWGSVEGGEAIRQALLQPVEYKEDGESTRVKESS
VRDALASLIGGEREVETPSGFIDMPSDAVIEVKYNNRWKHGLGQVLAYQS
HYPRLARRLHLFAYIGDKDTDKYFEMAKSVCYAQAVKVTFEEVGVE
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mRNA from alignment at S-dermatodea_contig83036:3..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83036.16491.1 ID=mRNA_S-dermatodea_contig83036.16491.1|Name=mRNA_S-dermatodea_contig83036.16491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig83036:3..440- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGAGGTGATCTCGGTCTTTGTCGCCAGATCGAGCAGAACAACCTGGT GTGGGGGTCTGTCGAAGGAGGAGAAGCCATTCGACAAGCTCTGCTTCAGC CGGTGGAGTACAAGGAAGACGGGGAGTCAACTAGGGTGAAGGAAAGTTCC GTGAGAGACGCTCTTGCTTCTCTCATCGGAGGAGAACGTGAGGTGGAAAC ACCCTCGGGTTTCATTGATATGCCCAGCGATGCCGTGATCGAGGTGAAGT ACAATAATCGATGGAAGCATGGGCTCGGGCAGGTGCTCGCGTACCAATCA CACTACCCTCGTCTGGCCAGGCGTCTGCACCTCTTTGCATACATTGGAGA TAAAGATACCGACAAGTACTTCGAGATGGCGAAGTCAGTGTGTTATGCGC AAGCGGTGAAGGTTACGTTCGAAGAGGTTGGCGTAGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83036:3..440-

>mRNA_S-dermatodea_contig83036.16491.1 ID=mRNA_S-dermatodea_contig83036.16491.1|Name=mRNA_S-dermatodea_contig83036.16491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at S-dermatodea_contig83036:3..440- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGAGGTGATCTCGGTCTTTGTCGCCAGATCGAGCAGAACAACCTGGT
GTGGGGGTCTGTCGAAGGAGGAGAAGCCATTCGACAAGCTCTGCTTCAGC
CGGTGGAGTACAAGGAAGACGGGGAGTCAACTAGGGTGAAGGAAAGTTCC
GTGAGAGACGCTCTTGCTTCTCTCATCGGAGGAGAACGTGAGGTGGAAAC
ACCCTCGGGTTTCATTGATATGCCCAGCGATGCCGTGATCGAGGTGAAGT
ACAATAATCGATGGAAGCATGGGCTCGGGCAGGTGCTCGCGTACCAATCA
CACTACCCTCGTCTGGCCAGGCGTCTGCACCTCTTTGCATACATTGGAGA
TAAAGATACCGACAAGTACTTCGAGATGGCGAAGTCAGTGTGTTATGCGC
AAGCGGTGAAGGTTACGTTCGAAGAGGTTGGCGTAGAAATGAGAGGTGAT
CTCGGTCTTTGTCGCCAGATCGAGCAGAACAACCTGGTGTGGGGGTCTGT
CGAAGGAGGAGAAGCCATTCGACAAGCTCTGCTTCAGCCGGTGGAGTACA
AGGAAGACGGGGAGTCAACTAGGGTGAAGGAAAGTTCCGTGAGAGACGCT
CTTGCTTCTCTCATCGGAGGAGAACGTGAGGTGGAAACACCCTCGGGTTT
CATTGATATGCCCAGCGATGCCGTGATCGAGGTGAAGTACAATAATCGAT
GGAAGCATGGGCTCGGGCAGGTGCTCGCGTACCAATCACACTACCCTCGT
CTGGCCAGGCGTCTGCACCTCTTTGCATACATTGGAGATAAAGATACCGA
CAAGTACTTCGAGATGGCGAAGTCAGTGTGTTATGCGCAAGCGGTGAAGG
TTACGTTCGAAGAGGTTGGCGTAGAA
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