mRNA_S-dermatodea_contig8302.16489.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8302.16489.1
Unique NamemRNA_S-dermatodea_contig8302.16489.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8302.16489.1 vs. uniprot
Match: D7FXS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS4_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.350e-20
Identity = 64/113 (56.64%), Postives = 67/113 (59.29%), Query Frame = 1 
Query:   67 ERRRLRGGYSVAT-GERIEGGVY---------ETRGLLGAVPVPCEEAGGGG------------GEEDFLKIESKWTNIALTFVCVVCAGLAAGLTMGLLSIEPLEMAIKQRS 339
            E +RLRG   VA  G    GG           ETRGL        EE  GGG            GEEDFL+IES W NIA+T VCVVCAGLAAGLTMGLLSIEPLEMAIKQRS
Sbjct:  137 EGQRLRGAAGVALEGSTAVGGANGNASPPAEAETRGLFEE-----EENEGGGLGLAGSAGALEFGEEDFLQIESTWVNIAMTSVCVVCAGLAAGLTMGLLSIEPLEMAIKQRS 244
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BLAST of mRNA_S-dermatodea_contig8302.16489.1 vs. uniprot
Match: A0A6H5KPI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI7_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.610e-19
Identity = 62/105 (59.05%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   67 ERRRLRGGYSVAT-GERIEGGVY---------ETRGLLGAVPVPCEEAGGGG----GEEDFLKIESKWTNIALTFVCVVCAGLAAGLTMGLLSIEPLEMAIKQRS 339
            E  RLRG   VA  G    GG           ETRGL          AG  G    GEEDFL+IES W NIA+T VCVVCAGLAAGLTMGLLSIEPLEMAIKQRS
Sbjct:  137 EGLRLRGTAGVALEGSEAVGGASGNASPPAEAETRGLFEEEGGCLGLAGSAGALEFGEEDFLQIESTWVNIAMTSVCVVCAGLAAGLTMGLLSIEPLEMAIKQRS 241
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BLAST of mRNA_S-dermatodea_contig8302.16489.1 vs. uniprot
Match: A0A835ZJ67_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ67_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.550e-9
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  196 EEDFLKIESKWTNIALTFVCVVCAGLAAGLTMGLLSIEPLEMAIKQRS 339
            E D LKIE    N+    V + CAGLAAGLT GLLSIEPLEMAIKQRS
Sbjct:  188 EGDALKIEGLVPNLICILVLITCAGLAAGLTTGLLSIEPLEMAIKQRS 235
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BLAST of mRNA_S-dermatodea_contig8302.16489.1 vs. uniprot
Match: A0A7S0FTN6_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FTN6_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 7.020e-6
Identity = 31/79 (39.24%), Postives = 40/79 (50.63%), Query Frame = 1 
Query:  118 EGGVYETRGLLGAVPVPCEEAG-----------GGGGEEDFLKIESKWTNIALTFVCVVCAGLAAGLTMGLLSIEPLEM 321
            +GG +   G L  V +PC   G           G    E  L +   W + A+  +CVV A LAAGLTMG++SIEP EM
Sbjct:  250 QGGAFVWGGKLSVVTIPCPIDGRWNSVPHCVDSGQEARERALSVYHLWFSAAMAIICVVTAALAAGLTMGMVSIEPFEM 328
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BLAST of mRNA_S-dermatodea_contig8302.16489.1 vs. uniprot
Match: W7SYW4_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYW4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.310e-6
Identity = 22/35 (62.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  232 NIALTFVCVVCAGLAAGLTMGLLSIEPLEMAIKQR 336
            N+  +F+CV+CA +AAGLT+GL+SI+PLE+ IKQR
Sbjct:  192 NLTFSFICVLCAAIAAGLTIGLMSIDPLELEIKQR 226
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BLAST of mRNA_S-dermatodea_contig8302.16489.1 vs. uniprot
Match: A0A4D9CY62_9STRA (Uncharacterized protein ycf23 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY62_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.770e-6
Identity = 22/35 (62.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  232 NIALTFVCVVCAGLAAGLTMGLLSIEPLEMAIKQR 336
            N+  +F+CV+CA +AAGLT+GL+SI+PLE+ IKQR
Sbjct:  191 NLTFSFICVLCAAIAAGLTIGLMSIDPLELEIKQR 225
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BLAST of mRNA_S-dermatodea_contig8302.16489.1 vs. uniprot
Match: W7TII6_9STRA (CNNM transmembrane domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TII6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.810e-5
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  220 SKWTNIALTFVCVVCAGLAAGLTMGLLSIEPLEMAIKQR 336
            S W ++ L F CV+ A +A+GLT+GL+SIEPLE+ IK+R
Sbjct:  217 SSWIHLGLAFACVMAAAIASGLTIGLMSIEPLELEIKER 255
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8302.16489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FXS4_ECTSI8.350e-2056.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPI7_9PHAE1.610e-1959.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJ67_9STRA7.550e-968.75CNNM transmembrane domain-containing protein n=1 T... [more]
A0A7S0FTN6_9DINO7.020e-639.24Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
W7SYW4_9STRA7.310e-662.86CNNM transmembrane domain-containing protein n=1 T... [more]
A0A4D9CY62_9STRA9.770e-662.86Uncharacterized protein ycf23 n=1 Tax=Nannochlorop... [more]
W7TII6_9STRA1.810e-556.41CNNM transmembrane domain-containing protein n=4 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8302contigS-dermatodea_contig8302:3806..4146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue3.7e-17
Seed eggNOG ortholog2880.D7FXS4
KEGG koko:K16302
KEGG TC9.A.40.3
EggNOG free text desc.magnesium ion homeostasis
EggNOG OGsCOG1253@1,KOG2118@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size343
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.5418649-CDS-S-dermatodea_contig8302:3805..41441622925334.5418649-CDS-S-dermatodea_contig8302:3805..4144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8302 3806..4144 +
1694079862.9426787-CDS-S-dermatodea_contig8302:3805..41441694079862.9426787-CDS-S-dermatodea_contig8302:3805..4144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8302 3806..4144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8302.16489.1prot_S-dermatodea_contig8302.16489.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8302 3806..4144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8302.16489.1

>prot_S-dermatodea_contig8302.16489.1 ID=prot_S-dermatodea_contig8302.16489.1|Name=mRNA_S-dermatodea_contig8302.16489.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
TGDVPNFAGVGWTSVAGSEEEEERRRLRGGYSVATGERIEGGVYETRGLL
GAVPVPCEEAGGGGGEEDFLKIESKWTNIALTFVCVVCAGLAAGLTMGLL
SIEPLEMAIKQRS
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mRNA from alignment at S-dermatodea_contig8302:3806..4146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8302.16489.1 ID=mRNA_S-dermatodea_contig8302.16489.1|Name=mRNA_S-dermatodea_contig8302.16489.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=341bp|location=Sequence derived from alignment at S-dermatodea_contig8302:3806..4146+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGGGGACGTGCCGAATTTTGCCGGCGTGGGGTGGACATCGGTAGCAGG
ATCGGAGGAGGAGGAGGAGAGGAGGCGACTGAGGGGGGGGTATTCGGTGG
CGACCGGCGAGCGTATCGAAGGAGGCGTTTATGAGACCAGGGGATTGTTG
GGTGCTGTCCCCGTACCCTGTGAGGAGGCCGGCGGCGGCGGCGGGGAGGA
AGATTTCCTCAAGATCGAGAGCAAGTGGACAAACATAGCCCTTACGTTCG
TGTGCGTGGTTTGCGCCGGCCTCGCGGCGGGGCTGACGATGGGCCTGCTG
TCGATCGAGCCCCTGGAGATGGCGATCAAGCAGCGCAGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8302:3806..4146+

>mRNA_S-dermatodea_contig8302.16489.1 ID=mRNA_S-dermatodea_contig8302.16489.1|Name=mRNA_S-dermatodea_contig8302.16489.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig8302:3806..4146+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGGGGACGTGCCGAATTTTGCCGGCGTGGGGTGGACATCGGTAGCAGG
ATCGGAGGAGGAGGAGGAGAGGAGGCGACTGAGGGGGGGGTATTCGGTGG
CGACCGGCGAGCGTATCGAAGGAGGCGTTTATGAGACCAGGGGATTGTTG
GGTGCTGTCCCCGTACCCTGTGAGGAGGCCGGCGGCGGCGGCGGGGAGGA
AGATTTCCTCAAGATCGAGAGCAAGTGGACAAACATAGCCCTTACGTTCG
TGTGCGTGGTTTGCGCCGGCCTCGCGGCGGGGCTGACGATGGGCCTGCTG
TCGATCGAGCCCCTGGAGATGGCGATCAAGCAGCGCAGCACCGGGGACGT
GCCGAATTTTGCCGGCGTGGGGTGGACATCGGTAGCAGGATCGGAGGAGG
AGGAGGAGAGGAGGCGACTGAGGGGGGGGTATTCGGTGGCGACCGGCGAG
CGTATCGAAGGAGGCGTTTATGAGACCAGGGGATTGTTGGGTGCTGTCCC
CGTACCCTGTGAGGAGGCCGGCGGCGGCGGCGGGGAGGAAGATTTCCTCA
AGATCGAGAGCAAGTGGACAAACATAGCCCTTACGTTCGTGTGCGTGGTT
TGCGCCGGCCTCGCGGCGGGGCTGACGATGGGCCTGCTGTCGATCGAGCC
CCTGGAGATGGCGATCAAGCAGCGCAGC
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