mRNA_S-dermatodea_contig830.16488.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig830.16488.1
Unique NamemRNA_S-dermatodea_contig830.16488.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig830.16488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig830contigS-dermatodea_contig830:13125..13687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size563
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig830.16488.1prot_S-dermatodea_contig830.16488.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig830 13232..13657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.4800243-UTR-S-dermatodea_contig830:13124..132311622925334.4800243-UTR-S-dermatodea_contig830:13124..13231Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 13125..13231 +
1694079862.9028203-UTR-S-dermatodea_contig830:13124..132311694079862.9028203-UTR-S-dermatodea_contig830:13124..13231Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 13125..13231 +
1622925334.508847-UTR-S-dermatodea_contig830:13657..136871622925334.508847-UTR-S-dermatodea_contig830:13657..13687Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 13658..13687 +
1694079862.930505-UTR-S-dermatodea_contig830:13657..136871694079862.930505-UTR-S-dermatodea_contig830:13657..13687Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 13658..13687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.4929316-CDS-S-dermatodea_contig830:13231..136571622925334.4929316-CDS-S-dermatodea_contig830:13231..13657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig830 13232..13657 +
1694079862.9215865-CDS-S-dermatodea_contig830:13231..136571694079862.9215865-CDS-S-dermatodea_contig830:13231..13657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig830 13232..13657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig830.16488.1

>prot_S-dermatodea_contig830.16488.1 ID=prot_S-dermatodea_contig830.16488.1|Name=mRNA_S-dermatodea_contig830.16488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
MVLDSRYVYTSDLGKKYSDVLFDREQWASTKTRLRYRQGSGSWFFVCTGS
KYQGLFWQWALCHGSCGSMLSVLAGTRSSLALVITAEHVVLLVAAMATGE
CAGVEWAYGFAHVGWWVVMLVSEGFAAHNPFAEEDGRGSLA*
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mRNA from alignment at S-dermatodea_contig830:13125..13687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig830.16488.1 ID=mRNA_S-dermatodea_contig830.16488.1|Name=mRNA_S-dermatodea_contig830.16488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=563bp|location=Sequence derived from alignment at S-dermatodea_contig830:13125..13687+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGGACGGACAAGGAAGACAGGAAGGTCGTGAGGCCCGACCCTTGCATC
CCGCTGTCTCTCCGATCGTCCCTCGAAGCCGCGCCGGTCAGGGACGGGAT
CTGGTCGATGGTGCTCGACTCTCGATACGTCTACACCTCGGACCTGGGCA
AGAAGTACAGCGACGTCCTGTTCGACAGGGAACAGTGGGCCTCGACGAAA
ACGCGCCTCCGATACAGGCAGGGGTCCGGCTCGTGGTTCTTCGTCTGCAC
CGGGTCGAAGTACCAGGGGCTGTTCTGGCAGTGGGCTCTGTGCCACGGGT
CGTGCGGGTCCATGCTGTCGGTCCTAGCGGGCACCCGTTCGTCGCTGGCT
CTGGTGATCACGGCTGAGCACGTCGTTTTGCTTGTAGCGGCTATGGCGAC
GGGGGAGTGCGCGGGCGTTGAGTGGGCGTATGGGTTCGCGCATGTCGGTT
GGTGGGTTGTGATGCTCGTCAGCGAGGGCTTCGCCGCGCACAATCCTTTC
GCGGAGGAAGATGGGCGTGGTTCGTTGGCCTGATTTGTTGGCCTGAAAAG
GGTTGGTTGGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig830:13125..13687+

>mRNA_S-dermatodea_contig830.16488.1 ID=mRNA_S-dermatodea_contig830.16488.1|Name=mRNA_S-dermatodea_contig830.16488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig830:13125..13687+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCTCGACTCTCGATACGTCTACACCTCGGACCTGGGCAAGAAGTA
CAGCGACGTCCTGTTCGACAGGGAACAGTGGGCCTCGACGAAAACGCGCC
TCCGATACAGGCAGGGGTCCGGCTCGTGGTTCTTCGTCTGCACCGGGTCG
AAGTACCAGGGGCTGTTCTGGCAGTGGGCTCTGTGCCACGGGTCGTGCGG
GTCCATGCTGTCGGTCCTAGCGGGCACCCGTTCGTCGCTGGCTCTGGTGA
TCACGGCTGAGCACGTCGTTTTGCTTGTAGCGGCTATGGCGACGGGGGAG
TGCGCGGGCGTTGAGTGGGCGTATGGGTTCGCGCATGTCGGTTGGTGGGT
TGTGATGCTCGTCAGCGAGGGCTTCGCCGCGCACAATCCTTTCGCGGAGG
AAGATGGGCGTGGTTCGTTGGCCTGAATGGTGCTCGACTCTCGATACGTC
TACACCTCGGACCTGGGCAAGAAGTACAGCGACGTCCTGTTCGACAGGGA
ACAGTGGGCCTCGACGAAAACGCGCCTCCGATACAGGCAGGGGTCCGGCT
CGTGGTTCTTCGTCTGCACCGGGTCGAAGTACCAGGGGCTGTTCTGGCAG
TGGGCTCTGTGCCACGGGTCGTGCGGGTCCATGCTGTCGGTCCTAGCGGG
CACCCGTTCGTCGCTGGCTCTGGTGATCACGGCTGAGCACGTCGTTTTGC
TTGTAGCGGCTATGGCGACGGGGGAGTGCGCGGGCGTTGAGTGGGCGTAT
GGGTTCGCGCATGTCGGTTGGTGGGTTGTGATGCTCGTCAGCGAGGGCTT
CGCCGCGCACAATCCTTTCGCGGAGGAAGATGGGCGTGGTTCGTTGGCCT
GA
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