mRNA_S-dermatodea_contig83.16485.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: D7FR96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR96_ECTSI) HSP 1 Score: 217 bits (553), Expect = 8.770e-68 Identity = 106/174 (60.92%), Postives = 125/174 (71.84%), Query Frame = 1
Query: 154 PKRDSAVSRHVVPTSGRCMFSAQEGQDGRAQDMDS--KVKPGAVPKAKLEIHAKTPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGGCDLHVLDIPRVLEASVCLIEWPDRLGAAQPMDRLGENV 669
P+R + M S Q+G+ G + M + KV G A LE+ +P+EME+ GAFFG D+ GGDVVLLWGDLGTGKTCFARGFVRARVGDP LAVTSPSYLLDN YEV DED+T+HHMDLYRL+GG DL VL IP V E VCL+EWPDRLGA QP++RL ++
Sbjct: 33 PRRGDISLFKTTAQRDKHMASIQDGRGGHTRGMTAMPKVDGGVACTATLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLTLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHL 206
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: A0A835Z1V9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V9_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.090e-42 Identity = 90/219 (41.10%), Postives = 116/219 (52.97%), Query Frame = 1
Query: 16 CTTYLNRSGGILSLLFGWCGLWVAPVATLSCR-HTSFRTTAGRVWVGPKRDSAVSRHVVPTSGRCMFSAQEGQDGRAQDMDSKVKPGAVPKAKLEIHAKTPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGGCDLHVLDIPRVLEASVCLIEWPDRLGAAQPMDRLGENV 669
CTT ++RS + P+ + CR H R++ R+ P + S +FSA+ R+ DS P + ++P+ ME G + GDV+LL GDLGTGKTCF+RGF+R DPDL VTSPSYLLDN YE D + +HHMDLYRL G DLHVL+IP +L SVCL+EWPDRL P RL +
Sbjct: 29 CTTKVSRSSTL------------PPILCIRCRQHQKQRSSFHRLSKRPVLG-------LDWSSTLLFSAETS---RSYCTDSTTGQDQPPTYTSSLMIRSPESMEQLGQLLARGAEAGDVILLIGDLGTGKTCFSRGFIRECAEDPDLLVTSPSYLLDNTYEATDGTM-VHHMDLYRLSGADDLHVLNIPEILSTSVCLVEWPDRLQHLTPSVRLEVRI 224
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: A0A7S2GEU5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GEU5_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.110e-40 Identity = 70/120 (58.33%), Postives = 82/120 (68.33%), Query Frame = 1
Query: 310 TPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGGCDLHVLDIPRVLEASVCLIEWPDRLGAAQPMDRLGENV 669
TP++ME GA S GD++ L GDLG GKTCFARGFV+ARVGDP L VTSPSYLLD YEV DED+ IHHMDLYRL G LD+ +CL+EWPDRLG P +RL ++
Sbjct: 51 TPEDMERFGATLARGSTAGDIIFLTGDLGAGKTCFARGFVKARVGDPYLRVTSPSYLLDQSYEVEDEDLIIHHMDLYRLSGTIGTVPLDLETKFRQCICLLEWPDRLGTDIPEERLEVSI 170
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: A0A7S2EJ05_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJ05_TRICV) HSP 1 Score: 141 bits (355), Expect = 1.360e-38 Identity = 67/122 (54.92%), Postives = 81/122 (66.39%), Query Frame = 1
Query: 292 LEIHAKTPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGGCDLHVLDIPRVLEASVCLIEWPDRLGAAQPMDRL 657
L + TP++MED GA + GGDV+LL GDLG GKTC +RGFVRAR G + VTSP+YLL N Y TI+HMDLYRL+GG DL LD+ + L +CLIEWP RLG + P RL
Sbjct: 4 LTLSVPTPEDMEDVGAVLSVGTSGGDVILLGGDLGAGKTCLSRGFVRARTGMEGMRVTSPTYLLSNSYPADGGRTTIYHMDLYRLKGGEDLEPLDMAKTLTDGICLIEWPSRLGESLPPARL 125
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: A0A7S4SUD7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SUD7_9STRA) HSP 1 Score: 140 bits (353), Expect = 2.280e-36 Identity = 69/127 (54.33%), Postives = 84/127 (66.14%), Query Frame = 1
Query: 292 LEIHAKTPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGGC-DLHVLDIPRVLEASVCLIEWPDRLGAAQPMDRLGENV 669
L++ T ++MED GA ++GGD +LL GDLG GKTCF+RGFVRAR G DL VTSP+YLL N YE D + IHHMDLYRL G DL LD+ VL + LIEWP RLG + P +RL +
Sbjct: 187 LQLSIPTSEDMEDVGAIISMGTKGGDTILLDGDLGAGKTCFSRGFVRARTGYIDLRVTSPTYLLSNTYEADDGNTIIHHMDLYRLSGNKEDLEPLDMEHVLTKCISLIEWPSRLGDSAPPERLEVTI 313
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: K0S9V1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9V1_THAOC) HSP 1 Score: 134 bits (336), Expect = 5.050e-35 Identity = 71/130 (54.62%), Postives = 87/130 (66.92%), Query Frame = 1
Query: 271 GAVPKAKLEIHAKTPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRG-GCDLHVLDIPRVLEASVCLIEWPDRLGAAQPMDRL 657
GA + LE+ TP++MED G +S GDV+LL GDLG GKTCF+RGFVRA+ G PD VTSP+YLL N Y V D ++ ++HMDLYRL G G DL LD+ V E + LIEWP RL A +P RL
Sbjct: 67 GASDRYSLELTIPTPEDMEDIGGLLSVNSLPGDVILLDGDLGAGKTCFSRGFVRAKTGLPDERVTSPTYLLSNAYSV-DSNLKVYHMDLYRLSGNGDDLAPLDLENVFENGISLIEWPSRL-ATKPETRL 194
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: A0A7S2XNM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNM5_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.460e-34 Identity = 66/116 (56.90%), Postives = 78/116 (67.24%), Query Frame = 1
Query: 310 TPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGGCDLHVLDIPRVLEASVCLIEWPDRLGAAQPMDRL 657
TP++MED GA + GD +LL GDLG GKTC ARGFVRAR G D++VTSP+YLL N YE D + IHHMDLYRL G DL L++ VL + LIEWP RLG+ P RL
Sbjct: 94 TPEDMEDLGAVLSMGTGPGDSILLKGDLGAGKTCLARGFVRARTGMADISVTSPTYLLSNTYEADDGALLIHHMDLYRLSGDKDLEPLNMNYVLSNCLSLIEWPSRLGSLTPTVRL 209
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: A0A7S2LPC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPC8_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.690e-30 Identity = 61/121 (50.41%), Postives = 77/121 (63.64%), Query Frame = 1
Query: 292 LEIHAKTPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGGC--DLHVLDIPRVLEASVCLIEWPDRLGAAQPM 648
L + ++P+ ME GA DS GDV+ L GDLG GKTCF+RGFVR RV P L VTSP++LL N Y ++V +HHMDLYRL +L LD+PRV+E + +IEWP RL M
Sbjct: 105 LHVKIESPEIMESLGAALAKDSVPGDVIFLDGDLGAGKTCFSRGFVRERVQRPRLRVTSPTFLLSNTYFCPQDEVEVHHMDLYRLFTNSKEELEPLDLPRVMEECISIIEWPSRLACYSDM 225
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: B8C2L2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2L2_THAPS) HSP 1 Score: 118 bits (295), Expect = 1.280e-27 Identity = 60/123 (48.78%), Postives = 75/123 (60.98%), Query Frame = 1
Query: 292 LEIHAKTPQEMEDAGAFFGTDSRGGDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGGC-DLHVLDIPRVLEASVCLIEWPDRLGAAQPMDRL 657
L++ T ++MED G S+ GD++LL GDLG GKTCF+RGF+R R G D VTSP+YLL N Y V ++HMDLYRL G DL LD+ V + LIEWP RL +P RL
Sbjct: 246 LKLCVPTAEDMEDIGGLLSVGSKKGDIILLDGDLGAGKTCFSRGFIRGRTGMEDERVTSPTYLLSNSYSVDGGKTKVYHMDLYRLSGSANDLLPLDLENVFTNGISLIEWPSRLNV-KPETRL 367
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Match: A0A7S3M7Y0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7Y0_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.390e-26 Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 1
Query: 364 GDVVLLWGDLGTGKTCFARGFVRARVGDPDLAVTSPSYLLDNIYEVGDEDVTIHHMDLYRLRGG-CDLHVLDIPRVLEASVCLIEWPDRL 630
GDV+LL GDLG GKT +RG ++A+ DP + VTSPSYLLDN Y G+ D IHHMDLYRL G ++ +L IP + ++++CL+EWP+RL
Sbjct: 17 GDVLLLQGDLGAGKTTLSRGIIQAKFRDPSMVVTSPSYLLDNTYRYGENDY-IHHMDLYRLPVGYTEMGILGIPSIFDSALCLVEWPNRL 105 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83.16485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig83.16485.1 >prot_S-dermatodea_contig83.16485.1 ID=prot_S-dermatodea_contig83.16485.1|Name=mRNA_S-dermatodea_contig83.16485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=225bp MHVRPCTTYLNRSGGILSLLFGWCGLWVAPVATLSCRHTSFRTTAGRVWVback to top mRNA from alignment at S-dermatodea_contig83:41811..43317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig83.16485.1 ID=mRNA_S-dermatodea_contig83.16485.1|Name=mRNA_S-dermatodea_contig83.16485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1507bp|location=Sequence derived from alignment at S-dermatodea_contig83:41811..43317- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig83:41811..43317- >mRNA_S-dermatodea_contig83.16485.1 ID=mRNA_S-dermatodea_contig83.16485.1|Name=mRNA_S-dermatodea_contig83.16485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at S-dermatodea_contig83:41811..43317- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |