mRNA_S-dermatodea_contig83.16483.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83.16483.1
Unique NamemRNA_S-dermatodea_contig83.16483.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83.16483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83contigS-dermatodea_contig83:31695..36534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_002320.1
Exons2
Model size1369
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83.16483.1prot_S-dermatodea_contig83.16483.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83 32500..36435 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.0839574-UTR-S-dermatodea_contig83:31694..324991622925334.0839574-UTR-S-dermatodea_contig83:31694..32499Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83 31695..32499 -
1694079862.6508086-UTR-S-dermatodea_contig83:31694..324991694079862.6508086-UTR-S-dermatodea_contig83:31694..32499Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83 31695..32499 -
1622925334.122806-UTR-S-dermatodea_contig83:36435..365341622925334.122806-UTR-S-dermatodea_contig83:36435..36534Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83 36436..36534 -
1694079862.6779506-UTR-S-dermatodea_contig83:36435..365341694079862.6779506-UTR-S-dermatodea_contig83:36435..36534Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83 36436..36534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.096372-CDS-S-dermatodea_contig83:32499..327481622925334.096372-CDS-S-dermatodea_contig83:32499..32748Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83 32500..32748 -
1694079862.6595929-CDS-S-dermatodea_contig83:32499..327481694079862.6595929-CDS-S-dermatodea_contig83:32499..32748Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83 32500..32748 -
1622925334.1085808-CDS-S-dermatodea_contig83:36219..364351622925334.1085808-CDS-S-dermatodea_contig83:36219..36435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83 36220..36435 -
1694079862.6687458-CDS-S-dermatodea_contig83:36219..364351694079862.6687458-CDS-S-dermatodea_contig83:36219..36435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83 36220..36435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83.16483.1

>prot_S-dermatodea_contig83.16483.1 ID=prot_S-dermatodea_contig83.16483.1|Name=mRNA_S-dermatodea_contig83.16483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=155bp
MGGRQSRVGQRDGLSHDSGDLMSRVEVKPSQQLVARLEQRQRNQSGSEPL
AVEEDQGKQEQEEMDLAARREEDDCRARELQAAKNAEAAYLAKIISSVSI
PTFPGSRQPSLCSEEAGAVVKCYRSQRKTGEELKCAMFVDVLETCTSNAT
RHNQ*
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mRNA from alignment at S-dermatodea_contig83:31695..36534-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83.16483.1 ID=mRNA_S-dermatodea_contig83.16483.1|Name=mRNA_S-dermatodea_contig83.16483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4840bp|location=Sequence derived from alignment at S-dermatodea_contig83:31695..36534- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCGGCCACTCTGTTTTTTACGGTTGATTTACCTCCTGTCCCCAGTCCC
CCAAAAGGGTCTATCGTGTTCATCGCTCGTGGAGTCCAAGACAGCAAGTA
TGGGAGGGCGACAATCACGAGTAGGGCAACGTGATGGATTGTCACACGAC
TCGGGCGATCTGATGTCAAGAGTTGAGGTGAAGCCATCGCAGCAGCTGGT
TGCGCGGCTTGAGCAGCGGCAAAGAAACCAGTCGGGATCGGAACCTTTGG
CGGTTGAGGAGGATCAAGGGAAACAGGAGCAGGAGGAGATGGACCTGGCC
GCACGGCGAGAGGAGGTGCGTGCCATACAAGCTATCAACTGCGCGGTATG
TGTGGACGAGGACCCGTCATCCTCTACAACTTCACGAGCTCCAAGAGCTC
GACCTACCGCCCGGTCCTCCGTTGCATTCATAAGACAGCCGGCGTGTGAA
AAGCGCTTGTCCGTCTTGCACGCCTCGTGATCCATGACGTATCCCCTTTG
CACTCGCCCAGTGGTTCAGCTGGTAACATTAAGATTCCAGCGAGGTGGAG
GTCATGGGCTCCATTCCCGCCAGAGCAAACCATTACATTCCCCTCTTTGC
CACCGAAAGCGATGAAATTGATCGATTGATTGATCGCTTTTGTTTGAACC
TTGCACACGTACAGCCGACCGGCTCCATCATTCGACCCTACTTGTGGTCA
CACCAAAGTGTAAAGGAGGAAATTCTAAATCAGAATTCTACAAGCAATAG
CAGAGCTCCACCGACATATATACGACCTTGTATGTGCAAGTGTGCAAGTA
TAGTGCAAGAAATATTAAAATATTATCGTACCTGTATGATACACAATTAT
CGCATTACAAGGAACGCCAAATACTGTTGAAGAAAAGAACGCCAAAAGAA
GAGCAAAGAGCAAAGTGAGACGGAGGAATCGGAATCGCACGAGCACACTA
TGAATAGGCCAGCTCCAGCGCTACGGGGACACGAGAGAGAGAGGAAATAG
AGGAAGGAAGACAGCGCAAGAGTAATAGCAAAATTATATCAACACAATCA
ATCACATATACTATTAGCTCTAATTATAATATAATATGACAGATATCATA
CGAATCGGCGAGCGGCAGGAGTGCTGAACCTACCTAGAGCGCGATAAACC
TCTCGGAGCTCTACTTGTAGAGCTCCAAGGCAAGATCCCTTCAGTACTCG
AGTATTTTATTATTACTGTACAAGTATACGATCGCCGGATCCTTGTCATA
CAAGATAAAATACATGTCTTCGTGTGATGTTGTCTCCGTGTGATCGCAAC
TATTAATACGTGTGCTTAGCTCGTTGTATTTGAGAAGAGTCGAACAAGAA
CGACCCCCCTGTCCGCAGCGCCTCCCTTAAAGGTACATTTCATCAAGGAC
AGGGCGAACCCCCTCAAGGTCACTCCTAAAACCGCCCTCGCTCCCCGATA
CCGAGGATGGATAAGCACAAACTTGTTTGACACACCGCCCGTCCTTCCCC
AAACATATAAAAAGACAGTACATTTTCAATAATACGATACGAGACCCGAT
GTACATCAGGTCAATACTTCCTGTCTTCTTCCCAAGCGCGGGCTTTCACA
GAGTGCTTGATAGCGCACATCAACCACTCTGGTGTACTTCCGCAGTGGGC
AGTGGTAGCACTAGCCCTGCATCAAGGGCAACCGCAATTCCATACCATAC
ACCATACTACATGACAAGTAGCACTACGTGTCCCGAAGATACATCAGTAT
TTCATGATTCTAAAGGCATTGGCTCACCATAGACAGAGTTAGTAACAGCA
GGCATTGCCCCAGCTTATTATGCCGAGGTTCGCATGAAGAAATTGCCACC
GGCACACCCTCAACCCGCGCCCTCACCCCCCCCCGCCCCTCCCTGAGCTC
GAATGGTTCTCGCGAACCGGCGAATATATCAGGCCTAGCGGCTGGCTCCC
TCTTATGTAGACTCCCTGATGCAAGGCCCCACTTGTGCAGGTACACTCTG
TATTTTATGATTTGTTCTGTGACGATCTCACCACAGACACTTGGTATTGA
AATTTGCTTGACGATCGATCCTTCAGCATATGCAAATACTTTTACATTCT
ACACGTCGACTCTGGTGTGCGACGGGCCCTTCGGGCGGTCTTCGGATGTG
CGCGCGAATGAAGGCGTCTCGAGAAATGACCGGGGCGACGCAAGTTGTAG
GGCTGAAAACGAGCACCGGTTATTGTGGTCCACAAAGGTGGAGGCGGTAC
AACTGCGAACATGACGCTACCGACGATGCCGTCGCCATTGTCAATGATGG
CGCCGCCTGTTCCCCGCGTGCGTTGTTTGAATGCCACGATAACGAATTTT
TCTCTTCCCTCAGGGTGAAACCCACCCAGATCGACGGAGATGCTCATAGC
GTAACATACAGGCGCCTTCTGTGTGAAACAGCAGCCGCTTGCTTGCAAAC
TATGAAAGCGTTTTCTCAACCTATTATGGACGGCGAAAGATGCAGCGAGC
GAGAACGGCTATTAATAGCCCACAGAGTGGCTTATCAAACGAACAATATT
CGGCCTCTCTGTGCGTTGAGTTCAAGTCGCACGGGACTATGTGACTTGCA
GTATATGGGTAATTGGCCGGAGATATATCCCCTTTTCGATGCGCGCTTCT
CGTGCACCCATTTTTGGTTTGCGGCACAGCGGCTGTGTGGATACGTACGA
TGTGTACGGATGTCGGCATGTCGCGGGAGGGGTCCGCAGAGCCCTGATAG
TTCTCTGTGTCTGGAATCTCTTCGATAGAGAAGTTTCGCTCTGAAAAATA
GCAAGTCCCTGACGGAGATGTGCCGTATGAGTTTTCGACCAAGCGCCGAC
CCGGCCCCAACAAATCAAACAGAGCCGCATGAGATATGCGGACCACAGGT
AGCCACAGCCCCGACGTAGCATGTTGAATCGTGGCAAGGAGATCGTCCAT
GCTATCGACACAAAAACAGCAACCAAAGAGGCGACGCCTCACAGTAGCCC
CAATGACACTAAACAATATATCGTTTGTTTTGATTTATGCGATCGAAGCT
GGACGGCCTACGGCCAAGAGTTTTAAAACCAAGCGAATTGCCATTTCCCA
AGTTCCTGCGCTCAAAAGAGAACGCTCCGACGTTATCGTGATACGGGTTC
GAAGTTCGTTAGTTGTCTCGCTATGATTGAAGGGACGTCGGCGCTGCGTG
ACTCTTGGTCCCTGCCTATGACAGTATTTTGTAGTTAAAAATATTAATCC
ATTCGCGTCTTTCCTTGATCACACTTCGTTGATCTTTGACCTCGAGGTTG
ACCCCCCCCCGACGGCTCGTAGGTTCACATCTGTATCGCGAACGCCCTCA
GCTTTTGCTGATATGTCATATTTTTCTTCCTCACACTCTTGCCTTTTCCG
AGACGGAACCAAGGGAGACCTCAGCCTGACACAGGAGGTTTCACCAATCG
AGTCGTTGGTGCCATGAGTCTCAACCACTGGGATGGAGGGTTTACCCACA
CCCGTACTCATCGCTATTCACGGAGCAGCAGTTGCCATCTCTACAACTTT
TCAGCGTGTCCCGTCATGTAGTCATCTTTGTCTCACAGGCTCCGGTATGG
TAGTGCGGCTCTAAGCCTCTGCATGATCTCTGCTCACCTGGAGTTTGGGA
AGCCAAACTATTTTAGTGTGCGTCACAGGATGGCGACAACAAATGAAGCC
CGTTGAAAGTCCGCACGCATGTATGGTTACTCAGTGGTGTCGACATGTAC
GCACATGCCCCTCTGCACCTTTGCTTCACGCCACAGGACGATTGTCGAGC
ACGCGAACTACAGGCGGCGAAGAATGCAGAGGCAGCGTACCTTGCAAAAA
TAATCAGCTCCGTTTCGATTCCCACGTTTCCTGGATCACGGCAACCTTCG
TTGTGTAGCGAAGAGGCGGGGGCTGTTGTGAAGTGCTATCGGTCACAGAG
AAAGACCGGCGAAGAGCTCAAGTGTGCTATGTTTGTGGATGTACTGGAGA
CGTGCACGTCGAACGCTACACGTCATAATCAATAGCATGCATAATATCGG
GTGGGAAGGTAACAAGTAAACTGTATACATGCCTCTTGCACGGGTTATGC
GGGGGAATCGGAGGGCCAACATGACACGAGTATGGGTCGAGAGGTAATGG
TGATAGCCCAAGTCAACACCCCGGCGTTATTTCCCTGTTTGACCCTGTCC
ACATTTGCCCCGCGTGACGCCGAGAATTGACATCATAGAGCGGTATATAC
TGCCTATCGTTCAAAATTGCAGGCGGTCGTATTCTATATTGAGGCACTGA
ACCTTTGTGCACTTGTAAACGTATACCAGGTAACTTTATATTGTGCGTTG
ATCGGAATACTTCTTTGCCGTCGAACAAGGGACGGATTTTTATTTTTTTA
ATGAGTATCACACGAGTACCCGAACGGCTCATTTCGACCCGACTCAGGCT
GCGCTAAAAGGGTGTTCGGTTCGTGCATTGTCCGCCCAACATATGTTGGC
AACACACGACGGATCGGTATTTAATGCCTTCCGTCCGAACGGGACCGTGC
CGGTCTGGCGTGACCAGCACATTTGAGTGACAAAGAGAGCCGATTCAATA
CATCGGACATCATTTTGTTTCACGAGAAGTTGTTTCACTTGTTCAGTAAT
GCTAAACGGCGTTCGTTCTTTTTGTGTGCCAATGGTTAGGGTCGTTTCTA
TCGAACGAGAAAAAACTCACGAAACGCGAGTCTGGAGCTCCAAAAACGTG
AGTCTAGATGTGTTCCGTTTTTATCAGAATTGTTCGTTTTTTTAATTTTC
TCTCCTAGAGCCAACGTGAGGGGGGACGAGGCACGTCGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig83:31695..36534-

>mRNA_S-dermatodea_contig83.16483.1 ID=mRNA_S-dermatodea_contig83.16483.1|Name=mRNA_S-dermatodea_contig83.16483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at S-dermatodea_contig83:31695..36534- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGGGCGACAATCACGAGTAGGGCAACGTGATGGATTGTCACACGA
CTCGGGCGATCTGATGTCAAGAGTTGAGGTGAAGCCATCGCAGCAGCTGG
TTGCGCGGCTTGAGCAGCGGCAAAGAAACCAGTCGGGATCGGAACCTTTG
GCGGTTGAGGAGGATCAAGGGAAACAGGAGCAGGAGGAGATGGACCTGGC
CGCACGGCGAGAGGAGATGGGAGGGCGACAATCACGAGTAGGGCAACGTG
ATGGATTGTCACACGACTCGGGCGATCTGATGTCAAGAGTTGAGGTGAAG
CCATCGCAGCAGCTGGTTGCGCGGCTTGAGCAGCGGCAAAGAAACCAGTC
GGGATCGGAACCTTTGGCGGTTGAGGAGGATCAAGGGAAACAGGAGCAGG
AGGAGATGGACCTGGCCGCACGGCGAGAGGAGGACGATTGTCGAGCACGC
GAACTACAGGCGGCGAAGAATGCAGAGGCAGCGTACCTTGCAAAAATAAT
CAGCTCCGTTTCGATTCCCACGTTTCCTGGATCACGGCAACCTTCGTTGT
GTAGCGAAGAGGCGGGGGCTGTTGTGAAGTGCTATCGGTCACAGAGAAAG
ACCGGCGAAGAGCTCAAGTGTGCTATGTTTGTGGATGTACTGGAGACGTG
CACGTCGAACGCTACACGTCATAATCAATAGGACGATTGTCGAGCACGCG
AACTACAGGCGGCGAAGAATGCAGAGGCAGCGTACCTTGCAAAAATAATC
AGCTCCGTTTCGATTCCCACGTTTCCTGGATCACGGCAACCTTCGTTGTG
TAGCGAAGAGGCGGGGGCTGTTGTGAAGTGCTATCGGTCACAGAGAAAGA
CCGGCGAAGAGCTCAAGTGTGCTATGTTTGTGGATGTACTGGAGACGTGC
ACGTCGAACGCTACACGTCATAATCAATAG
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