mRNA_S-dermatodea_contig83.16482.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83.16482.1
Unique NamemRNA_S-dermatodea_contig83.16482.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83.16482.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.550e-29
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:   16 VCPVTAILDSGSGVTAMSEGIARKLHCNFSEAKIVRRMDVPLHVKVADGRAVQVTEKRCPVRITLNTNWGPVSLDPLSFAIIPGTNDVVIVGSPTLAVLGIN 321
            VCP   ILDSG+G+TAMS  +A+KL     +  +V   D P  VK  +GR V VTEK CPVR+T++T WGPV LDP +FA++PGT+DVVI+G PTL  LGI+
Sbjct:  425 VCPAVGILDSGAGLTAMSASVAQKLQKKCPDVSVVVSTDHPHQVKTVEGRLVTVTEKTCPVRMTIHTQWGPVVLDPRAFAVMPGTDDVVIIGDPTLTKLGID 526
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BLAST of mRNA_S-dermatodea_contig83.16482.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.020e-27
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    1 ADLSGVCPVTAILDSGSGVTAMSEGIARKLHCNFSEAKIVRRMDVPLHVKVADGRAVQVTEKRCPVRITLNTNWGPVSLDPLSFAIIPGTNDVVIVGSPTLAVLGIN 321
            AD++ +  V AILD GSG+T MS GIA +L   F + ++V  M  P  +KVADGR + VT+K CPV+I L+T+WG VS+DPLSFA++PG ++VVI+G+PTL  LGI+
Sbjct:  529 ADMTAIDAV-AILDPGSGLTTMSAGIASRLQAAFPDVQVVGGMQNPGKLKVADGRVLAVTQKTCPVQIALHTSWGLVSVDPLSFAVMPGNDEVVILGNPTLKALGID 634
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BLAST of mRNA_S-dermatodea_contig83.16482.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.060e-21
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:   64 MSEGIARKLHCNFSEAKIVRRMDVPLHVKVADGRAVQVTEKRCPVRITLNTNWGPVSLDPLSFAIIPGTNDVVIVGSPTLAVLGIN 321
            MS  +A+KL     +  +V   D P  VK  +GR V VTEK CPVR+T++T WGPV LDP +FA++PGT+DVVI+G PTL  LGI+
Sbjct:    1 MSASVAQKLQKKCPDVSVVVSTDHPHQVKTVEGRLVTVTEKTCPVRMTIHTQWGPVVLDPRAFAVMPGTDDVVIIGDPTLTKLGID 86
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BLAST of mRNA_S-dermatodea_contig83.16482.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.210e-9
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  139 LHVKVAD-GRAVQVTEKRCPVRITLNTNWGPVSLDPLSFAIIPGTNDVVIVGSPTLAVLGIN 321
            LH +  D  R V  T K CP+R+ L+T WGPV L+P  F+++PG +D +++G  TL  LGI+
Sbjct:  344 LHAEGVDVDRTVPTTNKACPLRLALHTEWGPVVLEPFRFSVMPGEDDTILLGGATLKKLGID 405
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BLAST of mRNA_S-dermatodea_contig83.16482.1 vs. uniprot
Match: G4ZKW6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZKW6_PHYSP)

HSP 1 Score: 58.9 bits (141), Expect = 7.160e-8
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:    7 LSGVCPVTAILDSGSGVTAMSEGIARKLHCNFSEAKIVRRMDVPLHVKVADGRAVQVTEKRCPVRITLNTNWGPVSLDPLSFAIIPGTNDVVIVGSPTLAVLGIN 321
            L+G+  V    D+G+    ++  I  +L     +  +V  +DVP+ VKVADGR V  TE  C V + L T   PV+L  L   +I G  D  ++G  TL  LGIN
Sbjct:  315 LNGILEVPFRADTGADYDVITRHITHELR-KLDDDLVVEELDVPMKVKVADGRLVPCTEM-CEVDVQLLTAASPVNLRRLQCVVIDGDADEFLLGDRTLKSLGIN 417
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83.16482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE2.550e-2955.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE5.020e-2754.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE3.060e-2153.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L1I2_9PHAE3.210e-945.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4ZKW6_PHYSP7.160e-837.14Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83contigS-dermatodea_contig83:25418..25738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.0500581-CDS-S-dermatodea_contig83:25417..257381622925334.0500581-CDS-S-dermatodea_contig83:25417..25738Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83 25418..25738 +
1694079862.6419303-CDS-S-dermatodea_contig83:25417..257381694079862.6419303-CDS-S-dermatodea_contig83:25417..25738Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83 25418..25738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83.16482.1prot_S-dermatodea_contig83.16482.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83 25418..25738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83.16482.1

>prot_S-dermatodea_contig83.16482.1 ID=prot_S-dermatodea_contig83.16482.1|Name=mRNA_S-dermatodea_contig83.16482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
ADLSGVCPVTAILDSGSGVTAMSEGIARKLHCNFSEAKIVRRMDVPLHVK
VADGRAVQVTEKRCPVRITLNTNWGPVSLDPLSFAIIPGTNDVVIVGSPT
LAVLGIN
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mRNA from alignment at S-dermatodea_contig83:25418..25738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83.16482.1 ID=mRNA_S-dermatodea_contig83.16482.1|Name=mRNA_S-dermatodea_contig83.16482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at S-dermatodea_contig83:25418..25738+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGATTTGTCGGGCGTGTGTCCAGTAACCGCCATTCTTGACTCGGGGTC
GGGTGTCACGGCTATGTCGGAGGGCATCGCGAGGAAATTGCACTGCAATT
TTTCGGAAGCTAAGATTGTGCGGCGCATGGATGTTCCGCTTCACGTCAAG
GTTGCTGATGGGCGTGCTGTTCAGGTGACGGAGAAAAGGTGTCCGGTGAG
GATCACTTTGAACACGAACTGGGGTCCGGTGTCGTTGGATCCGTTGTCTT
TTGCGATCATTCCGGGAACCAACGACGTCGTTATCGTCGGGAGTCCGACG
TTGGCTGTGCTGGGTATTAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig83:25418..25738+

>mRNA_S-dermatodea_contig83.16482.1 ID=mRNA_S-dermatodea_contig83.16482.1|Name=mRNA_S-dermatodea_contig83.16482.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig83:25418..25738+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGATTTGTCGGGCGTGTGTCCAGTAACCGCCATTCTTGACTCGGGGTC
GGGTGTCACGGCTATGTCGGAGGGCATCGCGAGGAAATTGCACTGCAATT
TTTCGGAAGCTAAGATTGTGCGGCGCATGGATGTTCCGCTTCACGTCAAG
GTTGCTGATGGGCGTGCTGTTCAGGTGACGGAGAAAAGGTGTCCGGTGAG
GATCACTTTGAACACGAACTGGGGTCCGGTGTCGTTGGATCCGTTGTCTT
TTGCGATCATTCCGGGAACCAACGACGTCGTTATCGTCGGGAGTCCGACG
TTGGCTGTGCTGGGTATTAACGCCGATTTGTCGGGCGTGTGTCCAGTAAC
CGCCATTCTTGACTCGGGGTCGGGTGTCACGGCTATGTCGGAGGGCATCG
CGAGGAAATTGCACTGCAATTTTTCGGAAGCTAAGATTGTGCGGCGCATG
GATGTTCCGCTTCACGTCAAGGTTGCTGATGGGCGTGCTGTTCAGGTGAC
GGAGAAAAGGTGTCCGGTGAGGATCACTTTGAACACGAACTGGGGTCCGG
TGTCGTTGGATCCGTTGTCTTTTGCGATCATTCCGGGAACCAACGACGTC
GTTATCGTCGGGAGTCCGACGTTGGCTGTGCTGGGTATTAAC
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