mRNA_S-dermatodea_contig82914.16480.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82914.16480.1
Unique NamemRNA_S-dermatodea_contig82914.16480.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82914.16480.1 vs. uniprot
Match: D8LLV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLV1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 7.710e-19
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 RLINILLNNCEFVGARLSGEKRYLDACRDPTLPSGLDLKRNFVASLAKKV 150
            + INILLNNCEF+  RL+ EKRY DACRDPTLPSGLDLKR FVA LAK+V
Sbjct:  161 KFINILLNNCEFISERLASEKRYQDACRDPTLPSGLDLKRQFVAPLAKRV 210
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82914.16480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLV1_ECTSI7.710e-1978.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82914contigS-dermatodea_contig82914:405..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001770.1
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.9338284-CDS-S-dermatodea_contig82914:404..5541622925333.9338284-CDS-S-dermatodea_contig82914:404..554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82914 405..554 -
1694079862.5243266-CDS-S-dermatodea_contig82914:404..5541694079862.5243266-CDS-S-dermatodea_contig82914:404..554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82914 405..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82914.16480.1prot_S-dermatodea_contig82914.16480.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82914 405..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82914.16480.1

>prot_S-dermatodea_contig82914.16480.1 ID=prot_S-dermatodea_contig82914.16480.1|Name=mRNA_S-dermatodea_contig82914.16480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
RLINILLNNCEFVGARLSGEKRYLDACRDPTLPSGLDLKRNFVASLAKKV
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mRNA from alignment at S-dermatodea_contig82914:405..554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82914.16480.1 ID=mRNA_S-dermatodea_contig82914.16480.1|Name=mRNA_S-dermatodea_contig82914.16480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig82914:405..554- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCTGATCAACATCCTGCTCAACAACTGCGAGTTCGTGGGCGCACGACT
GAGCGGAGAAAAGCGGTACCTCGACGCCTGCCGCGACCCCACCTTGCCCT
CGGGGTTGGACCTTAAGAGGAATTTCGTCGCTTCTCTCGCCAAGAAGGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig82914:405..554-

>mRNA_S-dermatodea_contig82914.16480.1 ID=mRNA_S-dermatodea_contig82914.16480.1|Name=mRNA_S-dermatodea_contig82914.16480.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig82914:405..554- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCTGATCAACATCCTGCTCAACAACTGCGAGTTCGTGGGCGCACGACT
GAGCGGAGAAAAGCGGTACCTCGACGCCTGCCGCGACCCCACCTTGCCCT
CGGGGTTGGACCTTAAGAGGAATTTCGTCGCTTCTCTCGCCAAGAAGGTA
AGGCTGATCAACATCCTGCTCAACAACTGCGAGTTCGTGGGCGCACGACT
GAGCGGAGAAAAGCGGTACCTCGACGCCTGCCGCGACCCCACCTTGCCCT
CGGGGTTGGACCTTAAGAGGAATTTCGTCGCTTCTCTCGCCAAGAAGGTA
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