prot_S-dermatodea_contig8289.16477.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8289.16477.1
Unique Nameprot_S-dermatodea_contig8289.16477.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length165
Homology
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: D8LDH7_ECTSI (YihA6, YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH7_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 2.370e-89
Identity = 137/163 (84.05%), Postives = 151/163 (92.64%), Query Frame = 0
Query:    1 MLNTLFGEAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQASAA 163
            MLNTLFGE VAKVSKTPGRTR+INIFKAKN   KDVCYFADLPGYGYAKMSKD QR IEKFL MYLERR NLKLLILL DSRR+PL SDAG+LEYA+D+ DR ++ILLVATKVDKLNTMESVVNIKRLQEA++LPPGLPVSFS++TG+GKKEIW+YIRQA+AA
Sbjct:  298 MLNTLFGEPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAA 460          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: A0A836CAC1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC1_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.680e-56
Identity = 97/166 (58.43%), Postives = 125/166 (75.30%), Query Frame = 0
Query:    1 MLNTLFGEAVAKV----SKTPGRTRQINIFKAKNSKG--KDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQA 160
            MLN LFGE  AKV    SKTPGRT+ INIF A+   G  +++C FADLPGYGYAK++K+  R IE FL  YLERR  LKLLILLVD+RRD L SDA IL++A D     F++L+VATKVDKL+ ME+ +N+ R+++ + LP  LP+ FS+VTG+G+KE+W YIR+A
Sbjct:   35 MLNCLFGERAAKVRFVVSKTPGRTQLINIFSARGGAGGARELCRFADLPGYGYAKLAKEDMRAIEGFLMQYLERRAQLKLLILLVDARRDALDSDAEILDFAADM-GVGFRVLVVATKVDKLSAMEAALNLARIRDGFGLPEELPLPFSAVTGQGRKEVWQYIREA 199          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: A0A7S4HFM9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HFM9_9EUKA)

HSP 1 Score: 136 bits (342), Expect = 1.730e-37
Identity = 74/163 (45.40%), Postives = 106/163 (65.03%), Query Frame = 0
Query:    2 LNTLFG--EAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQASA 162
            LNTL G  + VA VSK+PGRTR +N+F+     GK VC   DLPGYGYAK++++MQ    K +E YL +R+ LKL IL VD +R+P   DA +L++         + L+V TKVDKL   +   +++RL+E+ +LP G P++FSS TG G+ E+W +I+   A
Sbjct:   35 LNTLSGRRKKVAVVSKSPGRTRSLNLFRV----GK-VCCLTDLPGYGYAKVNREMQDQWRKSIEAYLTKREQLKLAILFVDLQREPQEQDAQLLDFLSYY---DMETLVVGTKVDKLKANDKRTSVERLRESLELPDGQPIAFSSATGDGRSEVWRHIQDVCA 189          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: A0A0M0K3H5_9EUKA (Ribosome biogenesis gtp-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3H5_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 1.760e-36
Identity = 74/161 (45.96%), Postives = 102/161 (63.35%), Query Frame = 0
Query:    2 LNTLFG---EAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQ 159
            LNTL G   + +AKVSKTPG TR IN+++  N     VC   DLPGYGYAK+SK+MQ    K +E Y+ RR+ LKL +L VD++RDP  SDA +L++ +         L+VATK DKL       +++ L+E+  LP   P++ SSVTG GK+E+W  I +
Sbjct:   23 LNTLAGRPNKKIAKVSKTPGSTRLINLYRLGN-----VCTITDLPGYGYAKVSKEMQDDWRKQIEAYMRRREELKLAVLFVDAQRDPQESDAQLLDFLEAEAK---STLVVATKADKLAKQALQSSLEYLRESLALPSDQPIALSSVTGLGKREVWGAINE 175          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: A0A4D9CYN5_9STRA (EngB-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYN5_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.200e-35
Identity = 76/162 (46.91%), Postives = 103/162 (63.58%), Query Frame = 0
Query:    1 MLNTLFG--EAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQA 160
            +LN L G  + VA VSKTPGRT+QIN+FK  +S G  V    DLPGYGYAK+ K +Q  I   +  YL  R  L+L +LL+D+RR+P  SD  +++Y +        +L++ATKVDKL   +   N+ RL + + LP G+PV+FSSVTG  K+ IW  IR A
Sbjct:  103 LLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNG-PVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAA---NVPLLVLATKVDKLKHEDMEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAIWNAIRDA 260          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: A0A7S0LL08_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LL08_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 4.110e-35
Identity = 71/160 (44.38%), Postives = 100/160 (62.50%), Query Frame = 0
Query:    2 LNTLFG--EAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQ 159
            LN L G  +  AKVSKTPGRTR IN+FK     GK  C   DLPGYG+AK+S++MQ    + +E Y   R+ L+L +L VD++R+P  SD  +LE+           ++VATK DKL+      ++++L E +DLP G P+ FSS TG G +E+W Y++Q
Sbjct:   56 LNALSGRRKKAAKVSKTPGRTRLINLFKV----GK-ACAITDLPGYGFAKVSREMQDDWRRSIEAYFRNREQLRLAVLFVDAQREPQESDGQLLEFLLYN---ELPTVVVATKADKLSQTRLKASLRQLSEEFDLPEGQPIPFSSQTGAGVRELWQYLQQ 207          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: A0A7S2WVS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVS9_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.810e-35
Identity = 74/152 (48.68%), Postives = 99/152 (65.13%), Query Frame = 0
Query:   13 VSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQASAAG 164
            VSK PGRTR+IN+FK  +SKG     FADLPGYG+AK+SK+ QR IE FL  YLE R+ L +++LLVDSRR+P   D  ++ YA    + P   ++V TK DK+++ E     K LQ   DLP   P++FSS T +G  E+W  IR++ A G
Sbjct:    1 VSKMPGRTRRINLFKVADSKGA-FGVFADLPGYGFAKISKEGQRDIEDFLRKYLEDRRELDMVVLLVDSRREPQEIDRDMV-YAFRALEVPH--IIVMTKTDKISSAEKEQARKALQLELDLPEDQPIAFSSQTSEGLSELWGVIRESFAGG 148          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: W7U6M2_9STRA (Ribosome biogenesis gtp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6M2_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.420e-34
Identity = 75/162 (46.30%), Postives = 104/162 (64.20%), Query Frame = 0
Query:    1 MLNTLFG--EAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQA 160
            +LN L G  + VA VSKTPGRT+QIN+FK  +S G  V    DLPGYGYAK+ K +Q  I   +  YL  R  L+L +LL+D+RR+P  SD  +++Y +        +L++ATKVDKL   +   N+ RL + + LP G+PV+FSSVTG  K+ +W+ IR A
Sbjct:  209 LLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNG-PVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAA---NIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDA 366          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: A0A5M8SMD6_9BACT (Probable GTP-binding protein EngB n=1 Tax=Acidobacteria bacterium AB60 TaxID=1230846 RepID=A0A5M8SMD6_9BACT)

HSP 1 Score: 125 bits (313), Expect = 5.070e-33
Identity = 74/162 (45.68%), Postives = 97/162 (59.88%), Query Frame = 0
Query:    1 MLNTLFGEAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYIRQASA 162
            +LN L GE  AKVS TPGRTR IN F   + K +    FADLPGYG+AK+SK +     KF+E YL+ R  L L + LVDS   P P DA +L++ +   DR F  L+VATK+D+L+  E   N+  L++       LPVS  + TG G KE+W  I +A A
Sbjct:   39 LLNALAGEKAAKVSSTPGRTRTINFFLLSDEKQRPRVMFADLPGYGFAKISKSISAEWPKFIEPYLQDRPTLSLCVCLVDSNVPPQPRDAQLLDWLRSV-DRAF--LVVATKIDRLSGNERTRNLAALKKGLGTDDILPVS--AKTGAGLKELWGRIEEAGA 195          
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Match: UPI000D69A2CF (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Occallatibacter savannae TaxID=1002691 RepID=UPI000D69A2CF)

HSP 1 Score: 124 bits (310), Expect = 1.250e-32
Identity = 71/157 (45.22%), Postives = 95/157 (60.51%), Query Frame = 0
Query:    1 MLNTLFGEAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKMSKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRPDRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGKKEIWAYI 157
            +LN L GE  AKVS TPGRTR IN F+  + KG+     ADLPGYGYAK+SK +     KF+E YL  R+ LKL + LVDS   P  SD  +LE+ +   +R F  L+VATK D+L+  E   N+  ++  +D+   LPVS  + T  G KE+W  +
Sbjct:   38 LLNALVGEKAAKVSSTPGRTRAINFFQLVDDKGRPQVVLADLPGYGYAKISKSISAEWPKFIEPYLAERETLKLCVCLVDSNIPPQQSDGKLLEWLR-HVERDF--LVVATKTDRLSGNERTKNLSAIKREFDIDEVLPVS--AKTNAGIKELWKRL 189          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8289.16477.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDH7_ECTSI2.370e-8984.05YihA6, YihA/EngB-like GTPase n=1 Tax=Ectocarpus si... [more]
A0A836CAC1_9STRA1.680e-5658.43P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4HFM9_9EUKA1.730e-3745.40Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A0M0K3H5_9EUKA1.760e-3645.96Ribosome biogenesis gtp-binding protein n=1 Tax=Ch... [more]
A0A4D9CYN5_9STRA3.200e-3546.91EngB-type G domain-containing protein n=1 Tax=Nann... [more]
A0A7S0LL08_9EUKA4.110e-3544.38Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2WVS9_9STRA5.810e-3548.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U6M2_9STRA1.420e-3446.30Ribosome biogenesis gtp-binding protein n=1 Tax=Na... [more]
A0A5M8SMD6_9BACT5.070e-3345.68Probable GTP-binding protein EngB n=1 Tax=Acidobac... [more]
UPI000D69A2CF1.250e-3245.22ribosome biogenesis GTP-binding protein YihA/YsxC ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..163
e-value: 9.4E-31
score: 108.7
NoneNo IPR availablePANTHERPTHR11649MSS1/TRME-RELATED GTP-BINDING PROTEINcoord: 2..160
NoneNo IPR availablePANTHERPTHR11649:SF13GTP-BINDING PROTEIN ENGB-RELATEDcoord: 2..160
IPR019987GTP-binding protein, ribosome biogenesis, YsxCTIGRFAMTIGR03598TIGR03598coord: 1..157
e-value: 3.3E-37
score: 126.0
IPR006073GTP binding domainPFAMPF01926MMR_HSR1coord: 2..110
e-value: 9.3E-11
score: 41.8
IPR030393EngB-type guanine nucleotide-binding (G) domainPROSITEPS51706G_ENGBcoord: 1..163
score: 27.369
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8289contigS-dermatodea_contig8289:3260..6944 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8289.16477.1mRNA_S-dermatodea_contig8289.16477.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8289 3205..8301 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8289.16477.1 ID=prot_S-dermatodea_contig8289.16477.1|Name=mRNA_S-dermatodea_contig8289.16477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=165bp
MLNTLFGEAVAKVSKTPGRTRQINIFKAKNSKGKDVCYFADLPGYGYAKM
SKDMQRGIEKFLEMYLERRKNLKLLILLVDSRRDPLPSDAGILEYAQDRP
DRPFQILLVATKVDKLNTMESVVNIKRLQEAYDLPPGLPVSFSSVTGKGK
KEIWAYIRQASAAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019987GTP-bd_ribosome_bio_YsxC
IPR006073GTP_binding_domain
IPR030393G_ENGB_dom
IPR027417P-loop_NTPase