mRNA_S-dermatodea_contig8286.16475.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8286.16475.1
Unique NamemRNA_S-dermatodea_contig8286.16475.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: A0A6H5KAV5_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAV5_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 7.200e-59
Identity = 101/108 (93.52%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 QVLEDKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDGDPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQINQ 324
            QVLEDK GVFVNGL+QVPV+GWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQ+LKD+ADP+G+PQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQINQ
Sbjct:  205 QVLEDKTGVFVNGLSQVPVLGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQTLKDEADPEGEPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQINQ 312
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: D8LDY4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY4_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.060e-54
Identity = 99/107 (92.52%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    4 VLEDKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDGDPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQINQ 324
            VLEDK GVFVNGL+QVPV+GWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQ+LK++ADP+G+PQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQINQ
Sbjct:  172 VLEDKTGVFVNGLSQVPVLGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQTLKEEADPEGEPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQINQ 278
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: A0A812XL90_SYMMI (KIN4B protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XL90_SYMMI)

HSP 1 Score: 110 bits (276), Expect = 1.730e-28
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:   13 DKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDGDPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQIN 321
            D   VFV GL  +PV+    AL VLS G  NR TAST MN  SSRSHAVFTITL Q ++ D   D D   + SKLTFVDLAGSER+ RTGAEGQR +EGIQIN
Sbjct:    9 DTGAVFVQGLADMPVLSASEALHVLSAGTKNRITASTAMNAGSSRSHAVFTITLDQVVQSDVSED-DTSRMISKLTFVDLAGSERIKRTGAEGQRMKEGIQIN 110
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: A0A4D9D969_9STRA (Kinesin motor domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D969_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.390e-26
Identity = 69/123 (56.10%), Postives = 83/123 (67.48%), Query Frame = 1 
Query:    4 VLEDKN-GVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDA----------------DPDGDPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQIN 321
            + ED N GV V+GL  + V   + AL VL +G LNRTTA+TLMN VSSRSHAVFT+T+ Q LK D+                + + + Q V SKLTFVDLAGSERL RTGAEG+R+REGIQIN
Sbjct:  179 IREDANAGVLVSGLKDMVVHSRDEALQVLRKGTLNRTTAATLMNVVSSRSHAVFTVTMQQILKPDSGSGDREDLGGLKDGAEEGEEEGQVVMSKLTFVDLAGSERLKRTGAEGERRREGIQIN 301
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: B8BQ46_THAPS (Kinesin-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ46_THAPS)

HSP 1 Score: 107 bits (266), Expect = 1.350e-25
Identity = 62/106 (58.49%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:   10 EDKNG-VFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDGDPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQINQ 324
            ED  G VFV GL+ VPV+    A+ +L+ G +NRTTA+TLMN  SSRSHAVFTI L Q+ +     +G   T TS+LTFVDLAGSER+ +TGAEG+R REGI+IN+
Sbjct:  161 EDSKGEVFVVGLSTVPVINDAEAMGILNTGTMNRTTAATLMNCTSSRSHAVFTINLQQTTRGS---EGVDITTTSRLTFVDLAGSERMKKTGAEGERMREGIKINE 263
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: A0A1V9Z7M0_9STRA (Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7M0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.230e-23
Identity = 63/104 (60.58%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   10 EDKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDGDPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQIN 321
            +D++GVFV G  +V V   E AL+ L  G L R T ST MN VSSRSHAVFT+TL Q  KD A  D    T  SKLTFVDLAGSERL +T A+GQR +EGIQIN
Sbjct:  180 QDRSGVFVQGAREVAVTTPEDALEQLRVGCLTRITGSTEMNDVSSRSHAVFTLTLVQKTKDKAFVDA--MTTISKLTFVDLAGSERLKKTMADGQRMKEGIQIN 281
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: A0A7S2QVI8_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVI8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.240e-23
Identity = 63/119 (52.94%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    4 VLEDKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDGDP-------------QTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQIN 321
            + ED NGV V GL+   +   E AL VL +G ++RTTA+TLMN  SSRSHAVFT+TLT+ L  +     DP             +T  SKLTFVDLAGSER+ +TGAEG R +EGIQIN
Sbjct:  203 IREDSNGVTVVGLSSKVIRSAEEALSVLQKGTMHRTTAATLMNKHSSRSHAVFTVTLTKELVTNIPNISDPSAADPTAPGASSTRTTVSKLTFVDLAGSERMKKTGAEGDRMKEGIQIN 321
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: A0A067C178_SAPPC (Kinesin motor domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C178_SAPPC)

HSP 1 Score: 103 bits (256), Expect = 2.290e-23
Identity = 62/105 (59.05%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:   10 EDKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDG-DPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQIN 321
            +D++GVFV G  +VPV   E AL+ L  G L R T ST MN VSSRSHAVFT+TL Q  K   D    D  T  SK+TFVDLAGSERL +T A+GQR +EGIQIN
Sbjct:  176 QDRSGVFVQGAREVPVTTPEDALEQLRIGCLTRITGSTEMNDVSSRSHAVFTLTLVQKTKRSEDKSFLDTMTTISKVTFVDLAGSERLKKTMADGQRMKEGIQIN 280
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: A0A448Z507_9STRA (Kinesin motor domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z507_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.300e-23
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:   10 EDKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDGDPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQINQ 324
            + K G+ V GLT   +     AL+VL +G +NRTTA+TLMN  SSRSHAVFTI ++Q  +     D    T TS+ TFVDLAGSER+ +TGAEG+R REGI+IN+
Sbjct:  176 DSKGGIVVVGLTSRSISTTAEALEVLHEGTMNRTTAATLMNHTSSRSHAVFTIQMSQVTRRGNSGDSADMTTTSQFTFVDLAGSERMKKTGAEGERAREGIKINE 280
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BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Match: A0A485LGF3_9STRA (Aste57867_20952 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGF3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.080e-22
Identity = 60/107 (56.07%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:   10 EDKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRSHAVFTITLTQSLKDDADPDG---DPQTVTSKLTFVDLAGSERLGRTGAEGQRKREGIQIN 321
            +D++GVFV G+ +VPV   E AL+ L  G L R T ST MN  SSRSHAV+T+TL Q  K     D    D  T  SK TFVDLAGSERL +T AEG R +EGIQIN
Sbjct:  180 QDRSGVFVQGVREVPVTNAEVALEQLRLGCLTRITGSTEMNDASSRSHAVYTLTLIQKTKRTQPEDASFVDTMTTISKFTFVDLAGSERLKKTMAEGTRMKEGIQIN 286
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8286.16475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAV5_9PHAE7.200e-5993.52Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LDY4_ECTSI3.060e-5492.52Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A812XL90_SYMMI1.730e-2863.11KIN4B protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A4D9D969_9STRA3.390e-2656.10Kinesin motor domain-containing protein n=2 Tax=Mo... [more]
B8BQ46_THAPS1.350e-2558.49Kinesin-like protein (Fragment) n=1 Tax=Thalassios... [more]
A0A1V9Z7M0_9STRA1.230e-2360.58Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]
A0A7S2QVI8_9STRA1.240e-2352.94Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A067C178_SAPPC2.290e-2359.05Kinesin motor domain-containing protein n=2 Tax=Sa... [more]
A0A448Z507_9STRA2.300e-2354.29Kinesin motor domain-containing protein n=1 Tax=Ps... [more]
A0A485LGF3_9STRA1.080e-2256.07Aste57867_20952 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8286contigS-dermatodea_contig8286:4887..6926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue1.5e-47
Seed eggNOG ortholog2880.D8LDY4
KEGG koko:K10395
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-23_003320.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.6309056-CDS-S-dermatodea_contig8286:4887..49921622925333.6309056-CDS-S-dermatodea_contig8286:4887..4992Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8286 4888..4992 -
1694079862.298049-CDS-S-dermatodea_contig8286:4887..49921694079862.298049-CDS-S-dermatodea_contig8286:4887..4992Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8286 4888..4992 -
1622925333.6451275-CDS-S-dermatodea_contig8286:6707..69261622925333.6451275-CDS-S-dermatodea_contig8286:6707..6926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8286 6708..6926 -
1694079862.3198938-CDS-S-dermatodea_contig8286:6707..69261694079862.3198938-CDS-S-dermatodea_contig8286:6707..6926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8286 6708..6926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8286.16475.1prot_S-dermatodea_contig8286.16475.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8286 4888..6926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8286.16475.1

>prot_S-dermatodea_contig8286.16475.1 ID=prot_S-dermatodea_contig8286.16475.1|Name=mRNA_S-dermatodea_contig8286.16475.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
QVLEDKNGVFVNGLTQVPVVGWEAALDVLSQGVLNRTTASTLMNTVSSRS
HAVFTITLTQSLKDDADPDGDPQTVTSKLTFVDLAGSERLGRTGAEGQRK
REGIQINQ
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mRNA from alignment at S-dermatodea_contig8286:4887..6926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8286.16475.1 ID=mRNA_S-dermatodea_contig8286.16475.1|Name=mRNA_S-dermatodea_contig8286.16475.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2040bp|location=Sequence derived from alignment at S-dermatodea_contig8286:4887..6926- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTATTGGAGGACAAGAACGGTGTCTTCGTCAACGGCCTAACCCAGGT
GCCCGTAGTAGGGTGGGAGGCGGCCCTTGACGTGCTCAGCCAGGGTGTAT
TGAACCGAACCACCGCCTCCACCCTCATGAACACCGTCAGCAGCCGATCG
CACGCCGTCTTCACAATCACGCTAACCCAGAGCCTTAAGGATGACGCCGA
CCCAGACGGCGATCCTCAGGTGGGTGCTTTTGCTGTTAGTTGTTGAAATG
GGGGTGAATGTGTGTATGTGTGTATGTATGGTACTGCTGTAGCGGTACGC
ACGCTTTGGTTTTGATTTTTGCCAGAAGCCGATCCTCCTGTGCTGTTGTC
ATAGTTGCTGAATTCAGGGTGTATGTACGTAGGTATGAATGTAAATGTGT
GTATGTAAGATACAGCTGTAGTACGCATGCTTTGATTTGTATTTTGACCA
GCAGGTACCCGCTGCCGCGCCCGTGAGGCTTGCGTTGGTAGGGAGTGATG
TGACTGCGCCGCCCGCACGCAGTTTGTCTTTTTTTGTACTATACAAACAA
AATAAAGTATCTATAGAGTCTCCTCTATATCCCAATGAAAAACTGTGCGA
AGCGCCTTAATTTTTGTAAGATTTAGGTTTTTGTGTCATTTCCCCATCTC
GAACATAAGGATAAACAACGAAGTTACAAAACGTTCGCCTTTGGTCCGAG
TATCATACTGGTAGCGAAAAATATGTTTCATAGTTCTAATGTTTCTCTTC
TCATCAAAAGCAAATCATTCAAGAAATCATTTTTTATTTCGTTTTACTTG
TCTTATCATACCGTATCCCCCCCCTTGGCGCATAATAGGGTGATTAGATT
GGTTTAAAGCCGACAGATCGCCCCGCTCGCTCTCGCTCGCTCGCCAATGG
TTGCTCGCCGACCCCGGTCGTGGGTTCGAATGTGAAAGAAGCGAGGAATC
GAAAACCAACCTCTTTATGTATGTGTAAGGTGCCTTGTTTTAGTTGAAGT
AGTTACAATATGAAAGCGTGAAAAATAGTTTTTTGGTGAAAGTATACAAA
CTCAAAAATAAAAACTTACAAACTTCTTTTTGAGTTTTTTTCTGAGCTTA
GGAATCTTATCTTCCGCTTGGTCCACGCTGTACTTTGGTTGCTGCATTGT
ACGTCGTGTTCTACAGTACCTTTTGTTTCTTCTTTTTAATTCCGACCGAC
CGGCTGTATCGGGTGTGAGGAATCAAGTCATGTCTCATCTCCACGGTATG
AATCTTTTTACAGTAGTTTTTTGGTGAAAAGCCTGCGTGCGGACCACCAC
CCCGCTCTTGGCTCACCACAGGCCCGCATTCCCTCCTTAGCGATCGCTGT
CGGCGCTGCGAGCGGACCATCGTCGTTCGACATTTGCCCGTTTACGTTTT
CCGGCGTCTCTCAGTGGTAAATGATTTCGGAAACGCTCATCATCTGTGGT
ACTGTAAATAGTTTCGGAAACGCTCATCATCAGTCAACTTTTTCCTTTTT
TTTTTCGCCATGGTTCTTTCTTCGGGTTCTACCGGTGGAAAATAATTTCG
AACTCTTCGATCTTCTATTCCATACTGCACATTGCAGTTGTGAGTCAATG
GGGATATGTTCTATCGCTTCTTATCACTTACACATCTCCTATCCCTTATT
TTTATCACTGGATTGTCACATAGACTTTCACACACCATTATACTACATGT
TCCTCCATCTACAGCGCCTGTGAGGCGGTTTGTGTTGTTTTATATTACGT
GTAACTGCCGTACCGTTTTCTTTGGCCTTGGAGTCGCCGTCATTCCTTAG
GCGTTGCGGCGTCAGCCGCAGAAACCTTGTATTCTATACTATTATTGCAT
TGGTCGTGTGAGAATCAGTTTAGAAAACGCCTTTTTTTGTTAATATGAAA
ACGCAATCGAACGAATCAATGAACGTGTCTGCAGACGGTGACTTCGAAGC
TAACGTTTGTGGATCTGGCGGGGAGCGAGCGCCTCGGCAGGACGGGCGCC
GAGGGACAGAGGAAGCGGGAGGGCATCCAGATCAATCAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8286:4887..6926-

>mRNA_S-dermatodea_contig8286.16475.1 ID=mRNA_S-dermatodea_contig8286.16475.1|Name=mRNA_S-dermatodea_contig8286.16475.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig8286:4887..6926- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTATTGGAGGACAAGAACGGTGTCTTCGTCAACGGCCTAACCCAGGT
GCCCGTAGTAGGGTGGGAGGCGGCCCTTGACGTGCTCAGCCAGGGTGTAT
TGAACCGAACCACCGCCTCCACCCTCATGAACACCGTCAGCAGCCGATCG
CACGCCGTCTTCACAATCACGCTAACCCAGAGCCTTAAGGATGACGCCGA
CCCAGACGGCGATCCTCAGCAGGTATTGGAGGACAAGAACGGTGTCTTCG
TCAACGGCCTAACCCAGGTGCCCGTAGTAGGGTGGGAGGCGGCCCTTGAC
GTGCTCAGCCAGGGTGTATTGAACCGAACCACCGCCTCCACCCTCATGAA
CACCGTCAGCAGCCGATCGCACGCCGTCTTCACAATCACGCTAACCCAGA
GCCTTAAGGATGACGCCGACCCAGACGGCGATCCTCAGACGGTGACTTCG
AAGCTAACGTTTGTGGATCTGGCGGGGAGCGAGCGCCTCGGCAGGACGGG
CGCCGAGGGACAGAGGAAGCGGGAGGGCATCCAGATCAATCAGACGGTGA
CTTCGAAGCTAACGTTTGTGGATCTGGCGGGGAGCGAGCGCCTCGGCAGG
ACGGGCGCCGAGGGACAGAGGAAGCGGGAGGGCATCCAGATCAATCAG
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