mRNA_S-dermatodea_contig82824.16472.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82824.16472.1
Unique NamemRNA_S-dermatodea_contig82824.16472.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: A0A6H5J951_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J951_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.610e-24
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   13 QHPGPRDEGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            + P PR EGASFLA+KQTLLLSYCR+ICSYAA K  G  LGGGG AGRLV LRT++EKLRP+DR
Sbjct:  156 EDPWPRHEGASFLALKQTLLLSYCREICSYAAAKARGEALGGGGAAGRLVELRTVMEKLRPMDR 219          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: A0A8C9W9A8_SCLFO (Neuroguidin n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9W9A8_SCLFO)

HSP 1 Score: 58.2 bits (139), Expect = 2.730e-8
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 IMKRQHPG--PRDEGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            ++KR   G  P  +G SFL ++  LLL Y +D+    + K EG  +   G   RLVA+RT+LEK+RPLD+
Sbjct:   39 LIKRLQDGVHPTAKGLSFLDLRYQLLLFYLQDVTHLISLKAEGSSIKDSGALHRLVAVRTVLEKMRPLDQ 108          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: UPI001E269338 (LOW QUALITY PROTEIN: neuroguidin-like n=1 Tax=Lemur catta TaxID=9447 RepID=UPI001E269338)

HSP 1 Score: 57.8 bits (138), Expect = 3.640e-8
Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 IMKRQHPG--PRDEGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            + KR   G  P +EG SFL VK  LLL Y  D+      K  G  L G     RLV +RT+LEKLRPLD+
Sbjct:   35 LTKRVQAGAYPTEEGLSFLEVKDQLLLMYLMDLSHLILDKASGGSLKGHAAVLRLVEIRTVLEKLRPLDQ 104          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: A0A2K5F1C8_AOTNA (Neuroguidin n=2 Tax=Eutheria TaxID=9347 RepID=A0A2K5F1C8_AOTNA)

HSP 1 Score: 57.8 bits (138), Expect = 3.730e-8
Identity = 30/60 (50.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   25 PRDEGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            P ++G SFL VK  LLL Y  D+      K  GR L G     RLV +RT+LEKLRPLD+
Sbjct:   45 PTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGRSLQGHDAVLRLVEIRTVLEKLRPLDQ 104          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: A0A8J4D6W1_9CHLO (Sas10 domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D6W1_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 4.210e-8
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   34 EGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            EG S+L  K  LLLSYC  I  Y   K EGR +      GRLV LR+ LEK+RP+D+
Sbjct:  294 EGLSYLEAKHLLLLSYCIHIVFYLLLKAEGRPVRDHPVIGRLVELRSYLEKIRPIDK 350          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: A7SK02_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SK02_NEMVE)

HSP 1 Score: 54.7 bits (130), Expect = 6.980e-8
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   34 EGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            +G SFL +K  LLLSY  ++  Y   K EG+ + G     RLV +RT+LEKLRP+D+
Sbjct:   12 KGISFLEIKFHLLLSYLINVVYYILIKTEGQNIEGDPVVDRLVEIRTVLEKLRPIDQ 68          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: A0A6P8I5G4_ACTTE (neuroguidin-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I5G4_ACTTE)

HSP 1 Score: 57.0 bits (136), Expect = 6.990e-8
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   34 EGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            +G SFL VK  LLLSY  +I  Y   K +G  + G     RLV +RT+LEKLRP+D+
Sbjct:   48 KGISFLEVKTQLLLSYLINIVYYMLLKSDGEKIEGDSAIDRLVEIRTVLEKLRPIDQ 104          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: UPI001CFA6169 (neuroguidin n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA6169)

HSP 1 Score: 57.0 bits (136), Expect = 7.160e-8
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 1
Query:    1 IMKRQHPG--PRDEGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            +MKR H G     +G SFL VK  LLLSY  D+      K EG+ L       RLV +RT+LEK+RP+D+
Sbjct:   41 LMKRVHEGVYATTKGISFLEVKYQLLLSYLMDLTYIILHKVEGKSLREAKAVLRLVEIRTVLEKMRPIDQ 110          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: UPI000C8145FA (neuroguidin isoform X1 n=1 Tax=Loxodonta africana TaxID=9785 RepID=UPI000C8145FA)

HSP 1 Score: 57.0 bits (136), Expect = 7.650e-8
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   25 PRDEGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            P ++G SFL VK  LLL Y  D+      K  G  L G   A RLV +RT+LEK+RPLD+
Sbjct:   45 PTEKGLSFLEVKDQLLLMYLMDLSHLILHKASGGSLQGHAAALRLVEIRTVLEKIRPLDQ 104          
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Match: A0A5N5KS89_PANHP (Uncharacterized protein n=2 Tax=Siluroidei TaxID=1489793 RepID=A0A5N5KS89_PANHP)

HSP 1 Score: 56.6 bits (135), Expect = 9.790e-8
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   25 PRDEGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAGRLVALRTILEKLRPLDR 204
            P  +G SFL ++  LLL Y +D+    + K +G+ L   G   RLV +RT+LEK+RPLD+
Sbjct:   49 PTSKGLSFLDLRYHLLLFYLQDVAHLISIKADGQSLKDNGAIHRLVTIRTVLEKMRPLDQ 108          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82824.16472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J951_9PHAE1.610e-2475.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8C9W9A8_SCLFO2.730e-842.86Neuroguidin n=2 Tax=Scleropages formosus TaxID=113... [more]
UPI001E2693383.640e-847.14LOW QUALITY PROTEIN: neuroguidin-like n=1 Tax=Lemu... [more]
A0A2K5F1C8_AOTNA3.730e-850.00Neuroguidin n=2 Tax=Eutheria TaxID=9347 RepID=A0A2... [more]
A0A8J4D6W1_9CHLO4.210e-850.88Sas10 domain-containing protein n=1 Tax=Volvox ret... [more]
A7SK02_NEMVE6.980e-847.37Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A6P8I5G4_ACTTE6.990e-849.12neuroguidin-like n=1 Tax=Actinia tenebrosa TaxID=6... [more]
UPI001CFA61697.160e-845.71neuroguidin n=1 Tax=Protopterus annectens TaxID=78... [more]
UPI000C8145FA7.650e-848.33neuroguidin isoform X1 n=1 Tax=Loxodonta africana ... [more]
A0A5N5KS89_PANHP9.790e-843.33Uncharacterized protein n=2 Tax=Siluroidei TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82824contigS-dermatodea_contig82824:348..551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue8.7e-22
Seed eggNOG ortholog2880.D7FH58
Preferred nameNGDN
KEGG koko:K08873,ko:K14765,ko:K14767
KEGG Pathwayko03015,map03015
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000480,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG3117@1,KOG3117@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSas10/Utp3/C1D
Ec32 orthologEc-13_000850.1
Exons1
Model size204
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.4694273-CDS-S-dermatodea_contig82824:347..5481622925333.4694273-CDS-S-dermatodea_contig82824:347..548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82824 348..548 -
1694079862.2020185-CDS-S-dermatodea_contig82824:347..5481694079862.2020185-CDS-S-dermatodea_contig82824:347..548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82824 348..548 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.4801319-UTR-S-dermatodea_contig82824:548..5511622925333.4801319-UTR-S-dermatodea_contig82824:548..551Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82824 549..551 -
1694079862.2249453-UTR-S-dermatodea_contig82824:548..5511694079862.2249453-UTR-S-dermatodea_contig82824:548..551Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82824 549..551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82824.16472.1prot_S-dermatodea_contig82824.16472.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82824 348..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82824.16472.1

>prot_S-dermatodea_contig82824.16472.1 ID=prot_S-dermatodea_contig82824.16472.1|Name=mRNA_S-dermatodea_contig82824.16472.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
MKRQHPGPRDEGASFLAVKQTLLLSYCRDICSYAAFKGEGRVLGGGGPAG
RLVALRTILEKLRPLDR
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mRNA from alignment at S-dermatodea_contig82824:348..551-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82824.16472.1 ID=mRNA_S-dermatodea_contig82824.16472.1|Name=mRNA_S-dermatodea_contig82824.16472.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig82824:348..551- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATAATGAAACGACAGCATCCGGGACCTAGAGACGAAGGGGCCTCCTTTCT GGCCGTGAAGCAAACGCTGCTCCTGAGCTACTGCCGAGACATCTGCTCGT ACGCGGCGTTCAAGGGCGAAGGCCGGGTGTTGGGCGGAGGGGGACCCGCG GGAAGGCTCGTCGCGCTTCGGACGATCCTGGAGAAGCTTCGACCGCTAGA CAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig82824:348..551-

>mRNA_S-dermatodea_contig82824.16472.1 ID=mRNA_S-dermatodea_contig82824.16472.1|Name=mRNA_S-dermatodea_contig82824.16472.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig82824:348..551- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAACGACAGCATCCGGGACCTAGAGACGAAGGGGCCTCCTTTCTGGC
CGTGAAGCAAACGCTGCTCCTGAGCTACTGCCGAGACATCTGCTCGTACG
CGGCGTTCAAGGGCGAAGGCCGGGTGTTGGGCGGAGGGGGACCCGCGGGA
AGGCTCGTCGCGCTTCGGACGATCCTGGAGAAGCTTCGACCGCTAGACAG
GATGAAACGACAGCATCCGGGACCTAGAGACGAAGGGGCCTCCTTTCTGG
CCGTGAAGCAAACGCTGCTCCTGAGCTACTGCCGAGACATCTGCTCGTAC
GCGGCGTTCAAGGGCGAAGGCCGGGTGTTGGGCGGAGGGGGACCCGCGGG
AAGGCTCGTCGCGCTTCGGACGATCCTGGAGAAGCTTCGACCGCTAGACA
GG
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