mRNA_S-dermatodea_contig12681.1647.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12681.1647.1
Unique NamemRNA_S-dermatodea_contig12681.1647.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12681.1647.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.300e-22
Identity = 53/122 (43.44%), Postives = 76/122 (62.30%), Query Frame = 2 
Query:    5 EMPSPEAEASMNFGKKLIGKTATEWAKEQAKDDTVIAALDGIRSGRTTQG-REDQWPEEVDRDL--VKKLIQQGYILRLPGGHELLVRRPTRAPASKANRSPGRYDRLLGDEPVRTYVPEQL 361
            E    + +A++ FG+KL  KTA++WA  Q +DDT   A+  I      +  +E   PE VD DL  +K+L+ QG +L LP    LLVR+  +APA   NR+PG+++R +G+EPVRTYVP  L
Sbjct:  368 EYDEEQTQAAIEFGEKLCDKTASDWADIQEEDDTARLAITAIEGHADPKRMKEGDIPEGVDVDLDELKRLVSQGTLLVLPNSKHLLVRKELKAPAENPNRNPGQFERWVGEEPVRTYVPRML 489
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BLAST of mRNA_S-dermatodea_contig12681.1647.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.630e-18
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 2 
Query:   41 FGKKLIGKTATEWAKEQAKDDTVIAALDGIRSG-RTTQGREDQWPEEVDRDLVKKLIQQGYILRLPGGHELLVRRPTRAPASKANRSPGRYDRLLGDEPV 337
            FG++L  KTA++W + Q KD T  AAL  I       +  E+  PE VD D VK+L+ QG I+ L    +LLVRR TR P+++ NR+PG++DRLLGDEPV
Sbjct:  591 FGERLCEKTASDWVEAQYKDLTAKAALQLITDEVEVHKIGENDIPEGVDIDDVKRLVAQGTIMVLADSRKLLVRRATREPSNRPNRNPGQFDRLLGDEPV 690
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BLAST of mRNA_S-dermatodea_contig12681.1647.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.980e-14
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 2 
Query:   95 KDDTVIAALDGIRSGRTTQG-REDQWPEEVDRDL--VKKLIQQGYILRLPGGHELLVRRPTRAPASKANRSPGRYDRLLGDEPVRTYVPEQL 361
            KDDT   A+  I      +  +E   PE VD DL  +K+L+ QG +L LP    LLVR+  +APA   NR+PG+++RL+G++PVRTYVP  L
Sbjct:  478 KDDTARLAITAIEGHADPKRMKEGDIPEGVDVDLDELKRLVSQGTLLVLPNSKHLLVRKELKAPAENPNRNPGQFERLVGEQPVRTYVPRML 569
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12681.1647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWR4_9PHAE4.300e-2243.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRW3_9PHAE8.630e-1849.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KAM4_9PHAE1.980e-1445.65RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12681contigS-dermatodea_contig12681:5107..5467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005210.1
Exons1
Model size363
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.672295-UTR-S-dermatodea_contig12681:5106..51131622924257.672295-UTR-S-dermatodea_contig12681:5106..5113Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12681 5107..5113 +
1694079130.4068036-UTR-S-dermatodea_contig12681:5106..51131694079130.4068036-UTR-S-dermatodea_contig12681:5106..5113Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12681 5107..5113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924257.6829572-CDS-S-dermatodea_contig12681:5113..54671622924257.6829572-CDS-S-dermatodea_contig12681:5113..5467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12681 5114..5467 +
1694079130.4190772-CDS-S-dermatodea_contig12681:5113..54671694079130.4190772-CDS-S-dermatodea_contig12681:5113..5467Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12681 5114..5467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12681.1647.1prot_S-dermatodea_contig12681.1647.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12681 5114..5467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12681.1647.1

>prot_S-dermatodea_contig12681.1647.1 ID=prot_S-dermatodea_contig12681.1647.1|Name=mRNA_S-dermatodea_contig12681.1647.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MPSPEAEASMNFGKKLIGKTATEWAKEQAKDDTVIAALDGIRSGRTTQGR
EDQWPEEVDRDLVKKLIQQGYILRLPGGHELLVRRPTRAPASKANRSPGR
YDRLLGDEPVRTYVPEQL
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mRNA from alignment at S-dermatodea_contig12681:5107..5467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12681.1647.1 ID=mRNA_S-dermatodea_contig12681.1647.1|Name=mRNA_S-dermatodea_contig12681.1647.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=361bp|location=Sequence derived from alignment at S-dermatodea_contig12681:5107..5467+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGGAGATGCCGAGCCCCGAGGCGGAAGCATCGATGAATTTCGGGAAGA
AATTGATAGGAAAGACTGCTACGGAGTGGGCAAAAGAACAAGCCAAGGAC
GACACCGTAATAGCAGCGCTGGATGGGATCCGGAGCGGCCGGACAACGCA
AGGTCGTGAGGACCAGTGGCCTGAAGAGGTCGACAGGGATCTGGTCAAAA
AGCTGATTCAGCAGGGATATATACTACGACTGCCGGGAGGACACGAGCTG
TTGGTACGCCGGCCCACGAGGGCACCAGCGTCCAAAGCGAACCGGAGCCC
CGGCAGATACGACAGACTCCTGGGAGACGAGCCGGTCCGAACGTACGTGC
CAGAGCAATTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12681:5107..5467+

>mRNA_S-dermatodea_contig12681.1647.1 ID=mRNA_S-dermatodea_contig12681.1647.1|Name=mRNA_S-dermatodea_contig12681.1647.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig12681:5107..5467+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGAGCCCCGAGGCGGAAGCATCGATGAATTTCGGGAAGAAATTGAT
AGGAAAGACTGCTACGGAGTGGGCAAAAGAACAAGCCAAGGACGACACCG
TAATAGCAGCGCTGGATGGGATCCGGAGCGGCCGGACAACGCAAGGTCGT
GAGGACCAGTGGCCTGAAGAGGTCGACAGGGATCTGGTCAAAAAGCTGAT
TCAGCAGGGATATATACTACGACTGCCGGGAGGACACGAGCTGTTGGTAC
GCCGGCCCACGAGGGCACCAGCGTCCAAAGCGAACCGGAGCCCCGGCAGA
TACGACAGACTCCTGGGAGACGAGCCGGTCCGAACGTACGTGCCAGAGCA
ATTAATGCCGAGCCCCGAGGCGGAAGCATCGATGAATTTCGGGAAGAAAT
TGATAGGAAAGACTGCTACGGAGTGGGCAAAAGAACAAGCCAAGGACGAC
ACCGTAATAGCAGCGCTGGATGGGATCCGGAGCGGCCGGACAACGCAAGG
TCGTGAGGACCAGTGGCCTGAAGAGGTCGACAGGGATCTGGTCAAAAAGC
TGATTCAGCAGGGATATATACTACGACTGCCGGGAGGACACGAGCTGTTG
GTACGCCGGCCCACGAGGGCACCAGCGTCCAAAGCGAACCGGAGCCCCGG
CAGATACGACAGACTCCTGGGAGACGAGCCGGTCCGAACGTACGTGCCAG
AGCAATTA
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