mRNA_S-dermatodea_contig82762.16470.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82762.16470.1
Unique NamemRNA_S-dermatodea_contig82762.16470.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82762.16470.1 vs. uniprot
Match: A0A6H5J7B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B5_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 6.440e-30
Identity = 107/204 (52.45%), Postives = 113/204 (55.39%), Query Frame = -2 
Query:    6 ALRCFERAALLFHNRPHLWLRMAECSITHHRIRNSAARSNRTKESSAGTKTHXXXXXXXXXXXXXXXXXXXVGGGRGPLPWVTVGKGPHRRVLLPGSSTRGGXXXXXXXXXXXXDSARGAGVASPG----GGAIPPLDEDSSVETNGNTPXXXXXXXXXXXXXXXXXXXKR--------GRTGGCSLAHASRCLHNVLYLCAAR 581
            AL CFERAALLFHNRPHLWLRMAECSI  HR+ ++   ++     S  T T                      GGRGPLPW  VGKG HRRVLLP +S RG               A G G   P      GAIP LDED          XXXXXXXXXXXXXXXXXXX          GR  GCSLAHASRCLHNVLYLCAAR
Sbjct:  102 ALSCFERAALLFHNRPHLWLRMAECSIARHRLSSNGVGNS----GSPFTTTTNPVESKPSSAAGAAAGPDAAAGGRGPLPWTPVGKGQHRRVLLPRNSPRG--------------VATGGGSGDPARRDRDGAIPALDEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGR--GCSLAHASRCLHNVLYLCAAR 285
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BLAST of mRNA_S-dermatodea_contig82762.16470.1 vs. uniprot
Match: D7FLM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM7_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.890e-29
Identity = 107/205 (52.20%), Postives = 111/205 (54.15%), Query Frame = -2 
Query:    6 ALRCFERAALLFHNRPHLWLRMAECSITHHRIRNSAARSNRTKESSAGTKTHXXXXXXXXXXXXXXXXXXXVGGGRGPLPWVTVGKGPHRRVLLPGSSTRGGXXXXXXXXXXXXDSARGAGVASPGGGAIPPLDEDSSVETNGNTPXXXXXXXXXXXXXXXXXXXKRGRT-------------GGCSLAHASRCLHNVLYLCAAR 581
            ALRCFERAALLFHNRPHLWLRMAECSI  HR+      SN    S +   T                      GGRGPLPW  VGKG HRRVLLP +S+ G             DSAR         GAIP LDED          XXXXXXXXXXXXXXXXXXX                  GGCSLAHASRCLHNVLYLCAAR
Sbjct:  463 ALRCFERAALLFHNRPHLWLRMAECSIARHRLS-----SNGVGNSGSPFTTTSPVGSKPSSATGAAAGPDAAAGGRGPLPWTPVGKGQHRRVLLPRNSSGG----VAAGSGGSGDSAR-----RDRDGAIPALDEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGCSLAHASRCLHNVLYLCAAR 653
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82762.16470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7B5_9PHAE6.440e-3052.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLM7_ECTSI1.890e-2952.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82762contigS-dermatodea_contig82762:19..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size585
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.2960618-CDS-S-dermatodea_contig82762:18..6001622925333.2960618-CDS-S-dermatodea_contig82762:18..600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82762 19..600 +
1694079862.0415833-CDS-S-dermatodea_contig82762:18..6001694079862.0415833-CDS-S-dermatodea_contig82762:18..600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82762 19..600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82762.16470.1prot_S-dermatodea_contig82762.16470.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82762 19..600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82762.16470.1

>prot_S-dermatodea_contig82762.16470.1 ID=prot_S-dermatodea_contig82762.16470.1|Name=mRNA_S-dermatodea_contig82762.16470.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=194bp
CARAAHKYSTLCRHRLAWASEQPPVLPLFPLPMPPPPAPAALAVAVCVGV
FPFVSTELSSSSGGIAPPPGLATPAPRAESPPPPPPPAPPQPPPLVELPG
SKTRRCGPLPTVTQGRGPLPPPTAPPPLAEEGEGEEELLLSECVFVPADD
SLVLLLRAALLRMRWWVMLHSAIRSQRWGRLWKRSAARSKHRRA
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mRNA from alignment at S-dermatodea_contig82762:19..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82762.16470.1 ID=mRNA_S-dermatodea_contig82762.16470.1|Name=mRNA_S-dermatodea_contig82762.16470.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=583bp|location=Sequence derived from alignment at S-dermatodea_contig82762:19..601+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGCGCGCGCCGCACACAAATACAGCACGTTGTGCAGGCACCGGCTAGC
GTGGGCGAGCGAACAGCCTCCAGTCCTTCCTCTCTTCCCTCTCCCAATGC
CGCCGCCCCCCGCCCCCGCTGCGCTAGCGGTAGCGGTCTGTGTCGGCGTA
TTCCCGTTCGTCTCAACCGAACTATCCTCATCAAGCGGCGGAATCGCGCC
TCCTCCGGGGCTAGCGACCCCGGCTCCTCGCGCGGAATCACCACCCCCAC
CACCACCACCGGCGCCTCCACAACCGCCTCCTCTTGTGGAACTCCCGGGG
AGCAAGACGCGTCGGTGCGGGCCTTTGCCGACGGTTACCCAAGGGAGGGG
GCCTCTTCCGCCCCCGACTGCACCCCCCCCGCTCGCGGAGGAGGGGGAGG
GGGAGGAGGAGTTGCTACTATCGGAATGCGTTTTCGTTCCCGCCGACGAC
TCCTTGGTCCTGTTGCTGCGAGCTGCGCTGTTGCGGATGCGGTGGTGGGT
GATGCTGCACTCGGCCATCCGTAGCCAGAGATGGGGGCGGTTGTGGAAAA
GAAGCGCGGCGCGCTCGAAGCACCGGAGGGCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig82762:19..601+

>mRNA_S-dermatodea_contig82762.16470.1 ID=mRNA_S-dermatodea_contig82762.16470.1|Name=mRNA_S-dermatodea_contig82762.16470.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at S-dermatodea_contig82762:19..601+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGCGCGCGCCGCACACAAATACAGCACGTTGTGCAGGCACCGGCTAGC
GTGGGCGAGCGAACAGCCTCCAGTCCTTCCTCTCTTCCCTCTCCCAATGC
CGCCGCCCCCCGCCCCCGCTGCGCTAGCGGTAGCGGTCTGTGTCGGCGTA
TTCCCGTTCGTCTCAACCGAACTATCCTCATCAAGCGGCGGAATCGCGCC
TCCTCCGGGGCTAGCGACCCCGGCTCCTCGCGCGGAATCACCACCCCCAC
CACCACCACCGGCGCCTCCACAACCGCCTCCTCTTGTGGAACTCCCGGGG
AGCAAGACGCGTCGGTGCGGGCCTTTGCCGACGGTTACCCAAGGGAGGGG
GCCTCTTCCGCCCCCGACTGCACCCCCCCCGCTCGCGGAGGAGGGGGAGG
GGGAGGAGGAGTTGCTACTATCGGAATGCGTTTTCGTTCCCGCCGACGAC
TCCTTGGTCCTGTTGCTGCGAGCTGCGCTGTTGCGGATGCGGTGGTGGGT
GATGCTGCACTCGGCCATCCGTAGCCAGAGATGGGGGCGGTTGTGGAAAA
GAAGCGCGGCGCGCTCGAAGCACCGGAGGGCCTGCGCGCGCGCCGCACAC
AAATACAGCACGTTGTGCAGGCACCGGCTAGCGTGGGCGAGCGAACAGCC
TCCAGTCCTTCCTCTCTTCCCTCTCCCAATGCCGCCGCCCCCCGCCCCCG
CTGCGCTAGCGGTAGCGGTCTGTGTCGGCGTATTCCCGTTCGTCTCAACC
GAACTATCCTCATCAAGCGGCGGAATCGCGCCTCCTCCGGGGCTAGCGAC
CCCGGCTCCTCGCGCGGAATCACCACCCCCACCACCACCACCGGCGCCTC
CACAACCGCCTCCTCTTGTGGAACTCCCGGGGAGCAAGACGCGTCGGTGC
GGGCCTTTGCCGACGGTTACCCAAGGGAGGGGGCCTCTTCCGCCCCCGAC
TGCACCCCCCCCGCTCGCGGAGGAGGGGGAGGGGGAGGAGGAGTTGCTAC
TATCGGAATGCGTTTTCGTTCCCGCCGACGACTCCTTGGTCCTGTTGCTG
CGAGCTGCGCTGTTGCGGATGCGGTGGTGGGTGATGCTGCACTCGGCCAT
CCGTAGCCAGAGATGGGGGCGGTTGTGGAAAAGAAGCGCGGCGCGCTCGA
AGCACCGGAGGGCC
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