mRNA_S-dermatodea_contig82751.16468.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82751.16468.1
Unique NamemRNA_S-dermatodea_contig82751.16468.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: W7TL91_9STRA (Ribosome biogenesis protein bop1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL91_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.070e-27
Identity = 45/55 (81.82%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            QVL+KKLLSGC+WISS+D+HP+GDH++V SYDRRVVWFDLDLSS PYKTLKYH+K
Sbjct:   88 QVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSK 142
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 6.000e-26
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            Q+LVKKL+SGC+WIS +DVHPSGDHLIVGSYDRRV WFDLDL+STPYKTLKYH K
Sbjct:  504 QMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTK 558
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: A0A7S3HLF9_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF9_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.550e-26
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            Q LVKKL+SGC+W+SS+DVHPSGDH+IVGSYDRRVVWFDLDLSSTPYKTLK+H K
Sbjct:  719 QKLVKKLVSGCKWLSSIDVHPSGDHVIVGSYDRRVVWFDLDLSSTPYKTLKFHEK 773
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.590e-25
Identity = 46/55 (83.64%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            Q+LVKKL+SGC+WIS +DVHP+GDHLIVGSYDRRV WFDLDL+STPYKTLKYH K
Sbjct:  744 QMLVKKLISGCKWISCIDVHPTGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTK 798
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: K8YSG6_NANGC (Block of proliferation 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSG6_NANGC)

HSP 1 Score: 105 bits (263), Expect = 2.970e-25
Identity = 45/55 (81.82%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            QVL+KKLLSGC+WISS+D+HP+GDH++V SYDRRVVWFDLDLSS PYKTLKYH+K
Sbjct:  240 QVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSK 294
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: A0A7S2KDQ6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDQ6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.530e-25
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            Q +VK+LLSGCRWISS+DVHPSGDH+I GS DRR++WFDLDLSSTPYKTLKYH K
Sbjct:  712 QTMVKRLLSGCRWISSLDVHPSGDHVIAGSLDRRMIWFDLDLSSTPYKTLKYHEK 766
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: A0A7S3YFA3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA3_HETAK)

HSP 1 Score: 100 bits (249), Expect = 5.930e-25
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYH 162
            Q LVKK+L+GC+WIS+MDVHP+GDH++VGSYDRRVVW DLDLSS PYKTLKYH
Sbjct:   86 QALVKKVLTGCKWISAMDVHPTGDHVLVGSYDRRVVWCDLDLSSKPYKTLKYH 138
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: A0A4D9CM67_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM67_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.550e-25
Identity = 44/55 (80.00%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            QVL+KKLLSGC+WISS+D+HP+GDH++V SYDRRVVWFDLDLSS PY+TLKYH+K
Sbjct:  767 QVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYRTLKYHSK 821
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BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: A0A7S2ES45_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ES45_TRICV)

HSP 1 Score: 99.8 bits (247), Expect = 1.560e-24
Identity = 40/55 (72.73%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            Q +VK+L++GCRW+SS+DVHP+GDH++VGS DRR VWFDLDL STPYKTLKYH +
Sbjct:   99 QTMVKRLMTGCRWVSSLDVHPTGDHVLVGSLDRRAVWFDLDLGSTPYKTLKYHER 153
[Close]
BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Match: A0A024FYU0_9STRA (Ribosome biogenesis protein BOP1 homolog n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024FYU0_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.920e-24
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    4 QVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKTLKYHNK 168
            Q LVKKL SG +WISSMDVHPSGDH+I+GSYDRR+ WFDLDLSSTPYKTLKYH K
Sbjct:  672 QTLVKKLSSGVKWISSMDVHPSGDHVIIGSYDRRLCWFDLDLSSTPYKTLKYHEK 726
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82751.16468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TL91_9STRA5.070e-2781.82Ribosome biogenesis protein bop1 (Fragment) n=1 Ta... [more]
D7G698_ECTSI6.000e-2685.45Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A7S3HLF9_9STRA8.550e-2685.45Ribosome biogenesis protein BOP1 homolog n=1 Tax=S... [more]
A0A6H5JI55_9PHAE1.590e-2583.64Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
K8YSG6_NANGC2.970e-2581.82Block of proliferation 1 n=1 Tax=Nannochloropsis g... [more]
A0A7S2KDQ6_9STRA5.530e-2581.82Ribosome biogenesis protein BOP1 homolog n=1 Tax=L... [more]
A0A7S3YFA3_HETAK5.930e-2581.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CM67_9STRA7.550e-2580.00Ribosome biogenesis protein BOP1 homolog n=1 Tax=N... [more]
A0A7S2ES45_TRICV1.560e-2472.73Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A024FYU0_9STRA1.920e-2483.64Ribosome biogenesis protein BOP1 homolog n=2 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82751contigS-dermatodea_contig82751:127..294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog2880.D7G698
Preferred nameERB1
KEGG koko:K14824
GOsGO:0000003,GO:0000027,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0002682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030684,GO:0030686,GO:0030687,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035206,GO:0035690,GO:0042127,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042493,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0046483,GO:0048583,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051302,GO:0051704,GO:0051716,GO:0051726,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070545,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG0650@1,KOG0650@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925333.1187851-CDS-S-dermatodea_contig82751:126..2941622925333.1187851-CDS-S-dermatodea_contig82751:126..294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82751 127..294 +
1694079861.913213-CDS-S-dermatodea_contig82751:126..2941694079861.913213-CDS-S-dermatodea_contig82751:126..294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82751 127..294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82751.16468.1prot_S-dermatodea_contig82751.16468.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82751 127..294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82751.16468.1

>prot_S-dermatodea_contig82751.16468.1 ID=prot_S-dermatodea_contig82751.16468.1|Name=mRNA_S-dermatodea_contig82751.16468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
MQVLVKKLLSGCRWISSMDVHPSGDHLIVGSYDRRVVWFDLDLSSTPYKT
LKYHNK
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mRNA from alignment at S-dermatodea_contig82751:127..294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82751.16468.1 ID=mRNA_S-dermatodea_contig82751.16468.1|Name=mRNA_S-dermatodea_contig82751.16468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at S-dermatodea_contig82751:127..294+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTACTGGTGAAAAAGCTGCTCAGCGGTTGCAGGTGGATCAGCAG
CATGGACGTACACCCCTCGGGAGATCACCTCATTGTCGGCAGTTACGACC
GCAGGGTTGTCTGGTTCGACCTCGACCTCTCCAGCACGCCGTACAAGACG
CTCAAGTACCACAACAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig82751:127..294+

>mRNA_S-dermatodea_contig82751.16468.1 ID=mRNA_S-dermatodea_contig82751.16468.1|Name=mRNA_S-dermatodea_contig82751.16468.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig82751:127..294+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTACTGGTGAAAAAGCTGCTCAGCGGTTGCAGGTGGATCAGCAG
CATGGACGTACACCCCTCGGGAGATCACCTCATTGTCGGCAGTTACGACC
GCAGGGTTGTCTGGTTCGACCTCGACCTCTCCAGCACGCCGTACAAGACG
CTCAAGTACCACAACAAGATGCAGGTACTGGTGAAAAAGCTGCTCAGCGG
TTGCAGGTGGATCAGCAGCATGGACGTACACCCCTCGGGAGATCACCTCA
TTGTCGGCAGTTACGACCGCAGGGTTGTCTGGTTCGACCTCGACCTCTCC
AGCACGCCGTACAAGACGCTCAAGTACCACAACAAG
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