mRNA_S-dermatodea_contig82675.16465.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82675.16465.1
Unique NamemRNA_S-dermatodea_contig82675.16465.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82675.16465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82675contigS-dermatodea_contig82675:2..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size633
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82675.16465.1prot_S-dermatodea_contig82675.16465.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82675 255..572 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.6096878-UTR-S-dermatodea_contig82675:1..2541622925332.6096878-UTR-S-dermatodea_contig82675:1..254Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82675 2..254 +
1694079861.464671-UTR-S-dermatodea_contig82675:1..2541694079861.464671-UTR-S-dermatodea_contig82675:1..254Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82675 2..254 +
1622925332.6349099-UTR-S-dermatodea_contig82675:572..6341622925332.6349099-UTR-S-dermatodea_contig82675:572..634Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82675 573..634 +
1694079861.487093-UTR-S-dermatodea_contig82675:572..6341694079861.487093-UTR-S-dermatodea_contig82675:572..634Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82675 573..634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.6221712-CDS-S-dermatodea_contig82675:254..5721622925332.6221712-CDS-S-dermatodea_contig82675:254..572Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82675 255..572 +
1694079861.476383-CDS-S-dermatodea_contig82675:254..5721694079861.476383-CDS-S-dermatodea_contig82675:254..572Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82675 255..572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82675.16465.1

>prot_S-dermatodea_contig82675.16465.1 ID=prot_S-dermatodea_contig82675.16465.1|Name=mRNA_S-dermatodea_contig82675.16465.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MRSLNVRLQRTGIPTTTKCSARWWGGVLRILVDAYTIIQIVRISEYEHIV
CLSVRHDRDTLLCTLPVVMPLENNLRGGSRHTQHSTVVTVILSRHVIKMT
TNVSR*
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mRNA from alignment at S-dermatodea_contig82675:2..634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82675.16465.1 ID=mRNA_S-dermatodea_contig82675.16465.1|Name=mRNA_S-dermatodea_contig82675.16465.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at S-dermatodea_contig82675:2..634+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGAATCTGGCCCGACTTGCCAGAAAGACCCCCCCCCCGGCCAAAACCT
CGAGGTCGAGGCAGTATTATTATACAACAAGTAAAGTATGAAATGGATTT
CTGTGGTTGAATGTGATAATTATCTGTGGAATAAGGGGGAAACGAGAGAG
AGAGGGCAAGCACTTTCTTTCTTTCTTTACACTTTGTCTACTTATTACAA
GGTTCTTGGTGGGTGTGTCCTCGCTTTTCCGGCGGCAGAACACGCAGAAA
TACATGCGAAGCTTGAATGTGAGACTCCAACGAACGGGAATCCCGACGAC
TACTAAATGCTCCGCACGCTGGTGGGGGGGCGTTTTGCGCATCCTTGTGG
ACGCATATACAATAATACAAATAGTACGTATTAGTGAGTACGAACATATC
GTGTGCCTGTCTGTGAGGCATGACAGGGATACATTATTATGTACACTGCC
TGTTGTGATGCCCTTGGAGAACAATCTGCGGGGCGGCTCGAGGCACACAC
AGCACTCTACCGTTGTTACCGTAATCTTATCACGACATGTCATCAAGATG
ACCACCAACGTGTCAAGATGACCAACCGAATACATTATGTATAGACTAGT
TGCAAGCCACGGCTCTCGCCCGTGAGGTGTGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig82675:2..634+

>mRNA_S-dermatodea_contig82675.16465.1 ID=mRNA_S-dermatodea_contig82675.16465.1|Name=mRNA_S-dermatodea_contig82675.16465.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig82675:2..634+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAAGCTTGAATGTGAGACTCCAACGAACGGGAATCCCGACGACTAC
TAAATGCTCCGCACGCTGGTGGGGGGGCGTTTTGCGCATCCTTGTGGACG
CATATACAATAATACAAATAGTACGTATTAGTGAGTACGAACATATCGTG
TGCCTGTCTGTGAGGCATGACAGGGATACATTATTATGTACACTGCCTGT
TGTGATGCCCTTGGAGAACAATCTGCGGGGCGGCTCGAGGCACACACAGC
ACTCTACCGTTGTTACCGTAATCTTATCACGACATGTCATCAAGATGACC
ACCAACGTGTCAAGATGAATGCGAAGCTTGAATGTGAGACTCCAACGAAC
GGGAATCCCGACGACTACTAAATGCTCCGCACGCTGGTGGGGGGGCGTTT
TGCGCATCCTTGTGGACGCATATACAATAATACAAATAGTACGTATTAGT
GAGTACGAACATATCGTGTGCCTGTCTGTGAGGCATGACAGGGATACATT
ATTATGTACACTGCCTGTTGTGATGCCCTTGGAGAACAATCTGCGGGGCG
GCTCGAGGCACACACAGCACTCTACCGTTGTTACCGTAATCTTATCACGA
CATGTCATCAAGATGACCACCAACGTGTCAAGATGA
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