mRNA_S-dermatodea_contig8266.16464.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8266.16464.1
Unique NamemRNA_S-dermatodea_contig8266.16464.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8266.16464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8266contigS-dermatodea_contig8266:1009..2653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size489
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8266.16464.1prot_S-dermatodea_contig8266.16464.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8266 1009..2653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.5362065-CDS-S-dermatodea_contig8266:1008..11141622925332.5362065-CDS-S-dermatodea_contig8266:1008..1114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8266 1009..1114 +
1694079861.431526-CDS-S-dermatodea_contig8266:1008..11141694079861.431526-CDS-S-dermatodea_contig8266:1008..1114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8266 1009..1114 +
1622925332.552403-CDS-S-dermatodea_contig8266:1577..17461622925332.552403-CDS-S-dermatodea_contig8266:1577..1746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8266 1578..1746 +
1694079861.4418123-CDS-S-dermatodea_contig8266:1577..17461694079861.4418123-CDS-S-dermatodea_contig8266:1577..1746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8266 1578..1746 +
1622925332.5624845-CDS-S-dermatodea_contig8266:2439..26531622925332.5624845-CDS-S-dermatodea_contig8266:2439..2653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8266 2440..2653 +
1694079861.452364-CDS-S-dermatodea_contig8266:2439..26531694079861.452364-CDS-S-dermatodea_contig8266:2439..2653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8266 2440..2653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8266.16464.1

>prot_S-dermatodea_contig8266.16464.1 ID=prot_S-dermatodea_contig8266.16464.1|Name=mRNA_S-dermatodea_contig8266.16464.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
QGEWASGKPHGQGTATHKDGEKYVGTYKAGLYHGEGCYWYTNGAVYEGEY
RNGRVHGKGRATFPSGDSYAGEWKEGAMSGTGVYDFKAEGASYEGDFHNG
RMHGVGVYRWPHGDVYRGSWKGDRRSGRGRYEWTELGLTFEGTFRDDRRT
GRGSIIFSDNSRW
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mRNA from alignment at S-dermatodea_contig8266:1009..2653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8266.16464.1 ID=mRNA_S-dermatodea_contig8266.16464.1|Name=mRNA_S-dermatodea_contig8266.16464.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1645bp|location=Sequence derived from alignment at S-dermatodea_contig8266:1009..2653+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGTGAGTGGGCGTCGGGAAAGCCCCACGGACAGGGCACAGCTACCCA
CAAGGATGGGGAGAAGTACGTCGGCACTTACAAGGCGGGCCTGTACCATG
GGGAGGGTGAGTTTCCGTTTTTGTTTTCTTTCTATCTTGTCGTTGTTGTA
GTCTTTTTTCTCTTTTTACTACACTATTGAGTACCTGGTAATTCTTAGGT
ATTTTTGTCTTTGTCGGCTTGTTGCAATAGTTGTTTTCCTAAGTATTAAG
AAAATATACGAACGCACCCGAAGAAGACGCTCGGGGCCATTACTGGTTTG
TTCACGAGGCTCCGCCGTTATCGTATTGTTGCATACAAAACCCTCTCGTC
CCTGCCCAACCCAACCCCACGTCAACCCAACGCAATCCGCCCCACCCCCA
CCGAACTGAACCCCACCCGCCCCGCCCCACCCCACCCCACTCTAAACCAA
GCCATTCCAAACCAACCCACCCCAACCCCACCCAACCTCACCTATCCCAA
CCCACCCAACCTAACCCAACCCAACCCAACCCTACCCCACCGGGCGTTGG
TTGGTTGGAACGTAAACAGGGTGCTACTGGTACACCAACGGTGCTGTGTA
CGAGGGCGAGTATCGCAACGGCCGCGTGCACGGTAAGGGCCGCGCGACCT
TCCCCTCGGGGGATAGCTACGCGGGGGAGTGGAAAGAGGGCGCCATGTCC
GGCACCGGAGTGTACGACTTCAAGGCCGAGGGGGCCAGGTGCGCTGCGGG
GAAAGTGTTTTTTGTTGTTGTTTTTTTTTTTTAATGTGCGGTTGCTGCCG
TTCGGCGCAAGGCTGTATGTATGTATGTACAGTATGTATGTATGTATGTA
TGTATATACAGGTATGTATGGTATAGGGGAAGGAAGCCAGGGTCCCTTCG
TGGCCAATGACAAGAGAGTGAATCAAGAAAGCGCAAGCAGTCAAGATGAG
GTATGGGAATCACTTATTAATGGTTTACAACGTGTGGAACTCAAGCGATC
ACTCACTCACTCACTCAAATCAATCAACCAATCAATCAATCAATCAATCA
ATCAACCAATCAATCAATCAACCAATCAATCAATTACTCAATCAACCGAC
CAATCAATCAATTAATCAACCAACCAATCATCCAGTCAACCAATCAATCA
ACCAACCGACCAATCAATCAATCAACCGACCAATCAATCAATCAACCAAT
CAACCATTCAATCAACCAATTAATAAAGTACAACACCCGAAGTATTTTTG
TACCCGGCCGCGAGCGAACCTCGCGCCCACCGAGCCCACCTCACAACAAC
ACGCTCCATGTCCCATGTCCCATGTCCCATGCCCCTCGTCTCACATCCCA
CGTCCCACGGCCAACGTCTCACTTCCGGCGTCCCACGCCCGCGAAAATTG
GCAAAACAAACTCTACTCGCCTCGCGAGCAGCTACGAAGGAGACTTCCAC
AACGGTCGCATGCACGGCGTCGGGGTCTACCGCTGGCCTCATGGGGACGT
CTACCGGGGCTCCTGGAAGGGTGATCGACGAAGTGGGCGAGGTCGATACG
AGTGGACGGAGCTAGGGCTGACGTTCGAGGGCACCTTCAGAGACGACAGA
AGGACGGGCCGGGGCAGCATAATTTTCTCGGATAATTCTAGGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8266:1009..2653+

>mRNA_S-dermatodea_contig8266.16464.1 ID=mRNA_S-dermatodea_contig8266.16464.1|Name=mRNA_S-dermatodea_contig8266.16464.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig8266:1009..2653+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGTGAGTGGGCGTCGGGAAAGCCCCACGGACAGGGCACAGCTACCCA
CAAGGATGGGGAGAAGTACGTCGGCACTTACAAGGCGGGCCTGTACCATG
GGGAGGCAGGGTGAGTGGGCGTCGGGAAAGCCCCACGGACAGGGCACAGC
TACCCACAAGGATGGGGAGAAGTACGTCGGCACTTACAAGGCGGGCCTGT
ACCATGGGGAGGGGTGCTACTGGTACACCAACGGTGCTGTGTACGAGGGC
GAGTATCGCAACGGCCGCGTGCACGGTAAGGGCCGCGCGACCTTCCCCTC
GGGGGATAGCTACGCGGGGGAGTGGAAAGAGGGCGCCATGTCCGGCACCG
GAGTGTACGACTTCAAGGCCGAGGGGGCCAGGGTGCTACTGGTACACCAA
CGGTGCTGTGTACGAGGGCGAGTATCGCAACGGCCGCGTGCACGGTAAGG
GCCGCGCGACCTTCCCCTCGGGGGATAGCTACGCGGGGGAGTGGAAAGAG
GGCGCCATGTCCGGCACCGGAGTGTACGACTTCAAGGCCGAGGGGGCCAG
CTACGAAGGAGACTTCCACAACGGTCGCATGCACGGCGTCGGGGTCTACC
GCTGGCCTCATGGGGACGTCTACCGGGGCTCCTGGAAGGGTGATCGACGA
AGTGGGCGAGGTCGATACGAGTGGACGGAGCTAGGGCTGACGTTCGAGGG
CACCTTCAGAGACGACAGAAGGACGGGCCGGGGCAGCATAATTTTCTCGG
ATAATTCTAGGTGGCTACGAAGGAGACTTCCACAACGGTCGCATGCACGG
CGTCGGGGTCTACCGCTGGCCTCATGGGGACGTCTACCGGGGCTCCTGGA
AGGGTGATCGACGAAGTGGGCGAGGTCGATACGAGTGGACGGAGCTAGGG
CTGACGTTCGAGGGCACCTTCAGAGACGACAGAAGGACGGGCCGGGGCAG
CATAATTTTCTCGGATAATTCTAGGTGG
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