mRNA_S-dermatodea_contig8264.16463.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: D8LKA2_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA2_ECTSI) HSP 1 Score: 353 bits (905), Expect = 1.290e-112 Identity = 292/534 (54.68%), Postives = 339/534 (63.48%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGLVVLDLEYKSVSAGDALGALLKSHPTLADLRLGRNQLGEPGIGALSLGLRRSSTLLRLDLSSNALDTAAAEAIGRALCPPPPSP-PTPSGDTDHGGAEGQAGPPP--------LEFIDVSKNPLGDEGGAALLRAFASGVGASLTLRGLKMAEAGLGIATAAALADAIAPTGTSSGAASVVSEDGXXXXXXXXXXXXXSENSLVSSSNARALPLLKTLDMSKNELGAGGAARVGDALSRGGAPQXXXXXXXXXXXXXXXXXXXGRSAHAGLRVLDLSGNDLSGEGIKAVLSSRG--------------------------LREAKLFHNACGDEGVPMVLEALISGGVLETLDLGANGITGIGFDNLLPGXXXXXXXXXXXXXXNSNDDRAEAAVRLSQANNPGLDIAFRRGGEAMEGSGAPLAAGLG 1565
MAWGAPRGVDDL+ KL +N TA TMCILSTR+FGP++A AFS AL+ NTSL ELLASGHPL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+GL+VLDLEYKS+++G+ L LL++HPTLADLRLGRNQLGE G+ +LS GL +STLLRLD+S N L+ AAAEA+GRALC P+ +G + GG++ LEF+DVS+NPLGDEGGAAL RA A+ S TL GL +AEA LG AAALA+A+ P +S G N L L+ LD+SKNELG GG A V ALSRGGAP+ L L ++ ND+ +G A LREAKLFHNAC DEGVP+VLEAL++GG L+TLDLGANG+ XXXXXXXXXXXXXX SND+RAE AVR SQ +NP LDIAFRRGGEAMEGSGAP G+G
Sbjct: 1 MAWGAPRGVDDLIAKLNDNSTASTMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGLLVLDLEYKSIASGEGLRTLLETHPTLADLRLGRNQLGEAGMKSLSAGLSLNSTLLRLDVSGNQLNAAAAEALGRALCTHRPAAIGNQTGTSAVGGSDXXXXXXXXXXXXXXXLEFLDVSRNPLGDEGGAALFRALAT----SPTLTGLVLAEAKLGPLAAAALAEALVPP-PASPLPGGGGPSGPAEPDSGEMTPLPXXXXXXXXXNGGGLQKLQALDVSKNELGTGGGAEVAGALSRGGAPR--------------------------LETLSMAYNDVGDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREAKLFHNACKDEGVPLVLEALLAGGTLQTLDLGANGLXXXXXXXXXXXXXXXXXXXXXXXXXXSNDERAEEAVRRSQGSNPALDIAFRRGGEAMEGSGAPPGVGIG 503
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: A0A835YR55_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR55_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.110e-28 Identity = 165/498 (33.13%), Postives = 213/498 (42.77%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-GLVVLDLEYKSVSAGDALGALLKSHPTLADLRLGRNQLGEPGIGALSLGLRRSSTLLRLDLSSNALDTAAAEAIGRALCPPPPSPPTPSGDTDHGGAEGQAGPPPLEFIDVSKNPLGDEGGAALLRAFASGVGASLTLRGLKMAEAGLGIATAAALADAIAPTGTSSGAASVVSEDGXXXXXXXXXXXXXSENSLVSSSNARALPLLKTLDMSKN-ELGAGGAARVGDALSRGGAPQXXXXXXXXXXXXXXXXXXXGRSAHAGLRVLDLSGNDLSGEGIKAVLSSRGLREAKLFHNACGDEGVPMVLEALISGGV-----LETLDLGANGITGIGFDNLLPGXXXXXXXXXXXXXXNSNDDRAEAAVRLSQANNPGLDIAFRRGGEAMEGSG 1541
MAWGAP+GVDDL+ KLR + ++ IL RRFG +A F+ AL+ N++L EL ASGH + XXXXXXXXXXXXXXXXXXXXXXXXX N GLV LDLEYKSV+ GD +G LL+ H L DLRLGRN++G G+ AL GL S+ + L P L +D+S N L G L + A V + TL LK+ + L AAAL E++ + A L +LD++ N +LGA GA SR +A L LD S N + +G A+L+ L E +LF V AL + T DLGANG+T G LL N+ D+ AE+A+R Q P +D+AFR G + G+G
Sbjct: 1 MAWGAPKGVDDLLVKLRTDANLTSLVILRNRRFGVTEATQFAAALSSNSTLTELFASGHAVGEEGAAAXXXXXXXXXXXXXXXXXXXXXXXXXVTALVHGGLHKNTGLVKLDLEYKSVTRGDHIGHLLQHHTALQDLRLGRNRIGNDGLIALCQGLCASTXXXXXXXXXXXXXXXXXXXXTQTL------------------------PSTLTGLDLSGNALCGSAGHTLFTSLA--VAQNATLATLKLRDCALDATAAAAL---------------------------MLWSRTNPEHACYARHTA-----LSSLDLTGNTDLGAAGARAAVQCSSR-----LSWLSICGLCAGDEGAGLVAANAPPTLTHLDASRNGIGPDGACALLALLQLTELRLFXXXXXXXXXXAVAGALKRAAEAGSCKMATFDLGANGLTHEGIVVLLEAVRPCNFLRVLELGGNTVDEAAESAIRALQDVRPDVDVAFRTNGGGLGGAG 435
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: A0A7S2SI57_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SI57_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.540e-16 Identity = 139/501 (27.74%), Postives = 205/501 (40.92%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGLVVLDLEYKSVSAG--DALGALLKSHPTLADLRLGRNQLGEPGIGALSLGLRRSSTLLRLDLSSNALDTAAAEAIGRALCPPPPSPPTPSGDTDHGGAEGQAGPPPLEFIDVSKNPLGDEG--GAALLRAFASGVGASLTLRGLKMAEAGLGIATAAALADAIAPTGTSSGAASVVSEDGXXXXXXXXXXXXXSENSLVSSSNA-RALPLLKTLDMSKNELGAGGAARVGDALSRGGAPQXXXXXXXXXXXXXXXXXXXGRSAHAGLRVLDLSGNDLSGE------GIKAVLSSRGLREAKLFHNACGDEGVPMVLEALISGGVLETLDLGANGITGIGFDNLLPGXXXXXXXXXXXXXXNSND--DRAEAAVRLSQANNPGLDIAFRRGGEAME 1532
M WG +GVDDLV KL N+T +TM ILS R FG + +AF ALA NTSL ELL SGH XXXXXXXXXXXXXXXXXXXXX L ++LEYKS+ G +A+ + L+ L + LGRN L + + LS G++ S ++ + L SN L + +G +L L + K L D G L SG G + + ++ G+G AL ++ G+ + V++ +E+S + NA + L+ L +++N + G ++ L + L++LDLS N ++ E I ++ GL E +L N GD G +V + L + ++ L L +T G + +L SND D V + P +D+A + G E
Sbjct: 1 MVWGKKQGVDDLVQKLSRNETGETMLILSNRSFGDKETIAFCKALATNTSLKELLCSGHXXXXXXXXXXXXXXXXXXXXXXXGLGNSNFGDKGVAALFANWENST-LTHIELEYKSLGQGAMEAISSALQRENALESILLGRNGLNDTHVEVLSKGIQASPSINHICLKSNVLSATGCKHVGDSLR--------------------------LRDCEGFKLALDDNERIGCEGLETLVSGNGTGPVVTEMSLSGCGIGDDGVQALCASMTAKGSCFSSLQVLN----------ISRNKLTESSAEAFGNALKHNEKLRKLYLARNAIKVDGFFKLSQNLGK-------------------------------LQLLDLSANGITSEDSGVLDSIMVNIAKSGLVELRLLGNKIGDAGALVVCKGLRANTTIKHLSLAGIELTAKGCEAILSELESNTDTALRILELGSNDLGDEGRLLVENFREKRPDIDVAMDKQGNTAE 433
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: D0P484_PHYIT (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=D0P484_PHYIT) HSP 1 Score: 73.2 bits (178), Expect = 3.730e-10 Identity = 80/163 (49.08%), Postives = 105/163 (64.42%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NGLVVLDLEYKSVSAGDA--LGALLKSHPTLADLRLGRNQLGEPGIGALSLGLRRSS 545
MAWG GVDDL+ KL KTA ++ ++STR G +D V +++++ NT L EL SGH L XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +GL DLE+KS+ A A + LLK++ +L + L RNQ+G+ G+ L+ GL ++
Sbjct: 1 MAWGKKAGVDDLLQKLTNPKTARSLYVMSTRSIGDSDFVKLASSISSNTLLEELYLSGHQLGPLGLQAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLARNTQSGLQNWDLEFKSLGANGAAAVAELLKTNKSLTTVSLSRNQIGDEGVEKLAKGLSENA 163
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: A0A2P6VFQ9_9CHLO (Putative leucine rich repeat n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFQ9_9CHLO) HSP 1 Score: 70.5 bits (171), Expect = 3.050e-9 Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADT-MCILSTRRFGPADAVAFSTALACNTSLLELLASGHPL 251
MAWGA RGV+DL+ +LR + A T +C+L RRF ADAVAF+ ALA NTSL EL A+ HP+
Sbjct: 1 MAWGAKRGVEDLLERLRSDDPALTSLCLLRQRRFEEADAVAFAAALADNTSLRELTAAAHPV 62
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: A0A225WK68_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WK68_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.590e-9 Identity = 71/163 (43.56%), Postives = 93/163 (57.06%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NGLVVLDLEYKS--VSAGDALGALLKSHPTLADLRLGRNQLGEPGIGALSLGLRRSS 545
MAWG GVDDL+ KL KTA ++ ++STR +D V ++++ NT L EL SGH L XXXXXXXXXXXXXXXXXXXXX +GL DLE+KS V A+ LLKS+ L + L RNQ+G+ G+ ++ GL ++
Sbjct: 1 MAWGKKTGVDDLLQKLNNPKTAKSLYVMSTRSMTDSDFVRLASSIGSNTLLEELYLSGHELGPQGLQAFADCLAXXXXXXXXXXXXXXXXXXXXXILCAGLARNAQSGLQHWDLEFKSLGVDGASAVAELLKSNKALKTVTLSRNQIGDEGVEKVATGLSENA 163
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: A0A2P4Y2W7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2W7_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 4.790e-9 Identity = 73/163 (44.79%), Postives = 99/163 (60.74%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NGLVVLDLEYKSVSAG--DALGALLKSHPTLADLRLGRNQLGEPGIGALSLGLRRSS 545
MAWG GVDDL+ KL+ KTA ++ ++STR +D V +++++ NT L EL SGH L XXXXXXXXXXXXXXXXXXXXXXXXX +GL DLE+K++ A+ LLK++ L + L RNQ+G+ G+ L+ GL ++
Sbjct: 1 MAWGKKTGVDDLLQKLKNPKTAKSLYVMSTRSMSDSDFVRLASSISSNTLLEELYLSGHELGRQGLQAFAECLXXXXXXXXXXXXXXXXXXXXXXXXXAGLARNAQSGLQYWDLEFKALGLDGVSAVAELLKTNKVLMTVALSRNQIGDEGVETLAKGLSENA 163
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: H3GES3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GES3_PHYRM) HSP 1 Score: 68.6 bits (166), Expect = 1.130e-8 Identity = 52/159 (32.70%), Postives = 70/159 (44.03%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NGLVVLDLEYKS--VSAGDALGALLKSHPTLADLRLGRNQLGEPGIGALSLGL 533
MAWG GVDDL+ KL + KTA ++ ++STR +D V ++AL N L EL SGH L + L DLE+KS V AL LLK++ +L L L RNQ+G+ G+ L+ GL
Sbjct: 1 MAWGRKAGVDDLLQKLLQPKTAKSLYVMSTRSITDSDVVQLASALRSNELLEELYLSGHELGPQGLQAFAECLAINSTMKHLSLGSEKLGDEAVKVLSAGLARNKQSALQNWDLEFKSLTVDGAAALAELLKTNTSLTTLTLSRNQIGDEGVQKLADGL 159
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: A0A3M6VKV4_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKV4_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.490e-8 Identity = 74/159 (46.54%), Postives = 93/159 (58.49%), Query Frame = 3
Query: 69 MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NGLVVLDLEYKS--VSAGDALGALLKSHPTLADLRLGRNQLGEPGIGALSLGL 533
MAWG GVDDL+ KL KTA ++ ++STR +D V + +++ NT L EL SGH L XXXXXXXXXXXXXXXXXXXXXXX +GL+ DLE KS V A+ LLK++ L L L RNQ+G+ G+ L+ GL
Sbjct: 1 MAWGKKTGVDDLLQKLVNPKTATSLYVMSTRCMSDSDFVRLAGSISSNTMLQELYVSGHELGPQSVQAFADCLAXXXXXXXXXXXXXXXXXXXXXXXCAGLARNPQSGLLNWDLELKSLGVDGVSAIAELLKTNKVLTTLTLSRNQIGDEGMEKLAKGL 159
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Match: A0A2R5GZM4_9STRA (NACHT, LRR and PYD domains-containing protein 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZM4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.850e-8 Identity = 55/149 (36.91%), Postives = 69/149 (46.31%), Query Frame = 3
Query: 69 MAWGAPR-GVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSLLELLASGHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGLVVLDLEYKSVSAGDA--LGALLK--SHPTLADLRLGRNQLG 500
MAWG R GVDDLV KLR N+T + ++S R+ + A + ALA N+SL ELL SGH + L LDLE+KS++AG LG++L SH L DLRLGRN LG
Sbjct: 1 MAWGQQRRGVDDLVAKLRANETGPALLVMSMRKVDESGLCALADALAENSSLEELLCSGHSVSEDAAKRLGQALRQNSTLKRLSVGCAQFGDAELAALLDAWENST-LEALDLEFKSLTAGGMPHLGSVLAQPSH-ALQDLRLGRNDLG 147 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8264.16463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8264.16463.1 >prot_S-dermatodea_contig8264.16463.1 ID=prot_S-dermatodea_contig8264.16463.1|Name=mRNA_S-dermatodea_contig8264.16463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=506bp MAWGAPRGVDDLVTKLRENKTADTMCILSTRRFGPADAVAFSTALACNTSback to top mRNA from alignment at S-dermatodea_contig8264:1809..9199+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8264.16463.1 ID=mRNA_S-dermatodea_contig8264.16463.1|Name=mRNA_S-dermatodea_contig8264.16463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7391bp|location=Sequence derived from alignment at S-dermatodea_contig8264:1809..9199+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8264:1809..9199+ >mRNA_S-dermatodea_contig8264.16463.1 ID=mRNA_S-dermatodea_contig8264.16463.1|Name=mRNA_S-dermatodea_contig8264.16463.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3036bp|location=Sequence derived from alignment at S-dermatodea_contig8264:1809..9199+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |