mRNA_S-dermatodea_contig8263.16462.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8263.16462.1
Unique NamemRNA_S-dermatodea_contig8263.16462.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8263.16462.1 vs. uniprot
Match: D8LIE1_ECTSI (Rhodanese Homology Domain superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE1_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.060e-42
Identity = 100/187 (53.48%), Postives = 121/187 (64.71%), Query Frame = 2 
Query:    2 LVAVEASPEAAQAARGLSLISGARGCSVSVLECDEASIVE------------RLDTESRQETPSMDG-----GA-------GLFDVILLGGGSVADATELVAGGDGGETDGVERTPGDRLDIFLDRRLIKRSGLVLCDPSALVGGKAAARLLVARATEIKGTVEHARVPCAGPNGGLHVFKWKTYSH 490
            L  VEAS EAA AARGLSL++  RGCSV+VL CDE  +++            +  TE+       DG     GA       GLFDVILLGGG   +    V   +       +RTP +RLD+ +DRRL+KR+GLVLCDP AL GG+AAAR +VARA E+KG+VEHARVP AGP+GGLHVFKWKTYSH
Sbjct:  694 LFVVEASYEAASAARGLSLVAQGRGCSVTVLVCDEGEMLQSVTKVVAGADSPKASTEAAAAAVGKDGDVRPDGAAHRSARGGLFDVILLGGGDGVEGAGSVPVRE------EDRTPSERLDLVMDRRLMKRTGLVLCDPQALGGGRAAARSMVARAAEVKGSVEHARVPGAGPSGGLHVFKWKTYSH 874
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BLAST of mRNA_S-dermatodea_contig8263.16462.1 vs. uniprot
Match: A0A6H5L4H6_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H6_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 7.260e-32
Identity = 82/163 (50.31%), Postives = 98/163 (60.12%), Query Frame = 2 
Query:    2 LVAVEASPEAAQAARGLSLISGARGCSVSVLECDEASIVERLDTESRQETPSMDGGAGLFDVILLGGGSVADATELVAGGDGGETDGVERTPGDRLDIFLDRRLIKRSGLVLCDPSALVGGKAAARLLVARATEIKGTVEHARVPCAGPNGGLHVFKWKTYSH 490
            L AVEAS EAA AARGLSL++ ARGCSV+VL CDE  ++E + T   +   +                      E              R P D    +   RL+KR+GLVLCDP AL GG+AAAR +VARA E+KG+VEHARVP AGP+GGLHVFKWKTYSH
Sbjct:  738 LFAVEASSEAATAARGLSLVAQARGCSVTVLVCDEGEMLESIRTVVAEADSAKXXXXXXXXXXXXXXXXXXFRLERR----------TARQPKDWTLSWTGERLMKRTGLVLCDPQALGGGRAAARSMVARAAEVKGSVEHARVPGAGPSGGLHVFKWKTYSH 890
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8263.16462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIE1_ECTSI1.060e-4253.48Rhodanese Homology Domain superfamily n=1 Tax=Ecto... [more]
A0A6H5L4H6_9PHAE7.260e-3250.31Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8263contigS-dermatodea_contig8263:5440..7759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.1e-29
Seed eggNOG ortholog2880.D8LIE1
EggNOG free text desc.Rhodanase C-terminal
EggNOG OGs2QPZW@2759,COG1054@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size916
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8263.16462.1prot_S-dermatodea_contig8263.16462.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8263 6334..7336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.3581848-UTR-S-dermatodea_contig8263:5439..55201622925332.3581848-UTR-S-dermatodea_contig8263:5439..5520Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8263 5440..5520 +
1694079861.296635-UTR-S-dermatodea_contig8263:5439..55201694079861.296635-UTR-S-dermatodea_contig8263:5439..5520Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8263 5440..5520 +
1622925332.3677921-UTR-S-dermatodea_contig8263:6257..63331622925332.3677921-UTR-S-dermatodea_contig8263:6257..6333Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8263 6258..6333 +
1694079861.3082075-UTR-S-dermatodea_contig8263:6257..63331694079861.3082075-UTR-S-dermatodea_contig8263:6257..6333Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8263 6258..6333 +
1622925332.3994884-UTR-S-dermatodea_contig8263:7336..77591622925332.3994884-UTR-S-dermatodea_contig8263:7336..7759Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8263 7337..7759 +
1694079861.3421757-UTR-S-dermatodea_contig8263:7336..77591694079861.3421757-UTR-S-dermatodea_contig8263:7336..7759Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8263 7337..7759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.378377-CDS-S-dermatodea_contig8263:6333..64821622925332.378377-CDS-S-dermatodea_contig8263:6333..6482Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8263 6334..6482 +
1694079861.3181527-CDS-S-dermatodea_contig8263:6333..64821694079861.3181527-CDS-S-dermatodea_contig8263:6333..6482Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8263 6334..6482 +
1622925332.388417-CDS-S-dermatodea_contig8263:7149..73361622925332.388417-CDS-S-dermatodea_contig8263:7149..7336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8263 7150..7336 +
1694079861.3285487-CDS-S-dermatodea_contig8263:7149..73361694079861.3285487-CDS-S-dermatodea_contig8263:7149..7336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8263 7150..7336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8263.16462.1

>prot_S-dermatodea_contig8263.16462.1 ID=prot_S-dermatodea_contig8263.16462.1|Name=mRNA_S-dermatodea_contig8263.16462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MDGGAGLFDVILLGGGSVADATELVAGGDGGETDGVERTPGDRLDIFLDR
RLIKRSGLVLCDPSALVGGKAAARLLVARATEIKGTVEHARVPCAGPNGG
LHVFKWKTYSH*
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mRNA from alignment at S-dermatodea_contig8263:5440..7759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8263.16462.1 ID=mRNA_S-dermatodea_contig8263.16462.1|Name=mRNA_S-dermatodea_contig8263.16462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2320bp|location=Sequence derived from alignment at S-dermatodea_contig8263:5440..7759+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGGTAGCGGTTGAGGCGTCGCCCGAAGCGGCACAGGCGGCACGAGGCC
TGTCCCTGATCTCCGGAGCACGAGGCTGCAGGCGAGACGTTTTTTTTTTT
TTTTTTGCGGCGGCGGCGGCGGATTTCGTGTGGCATAAGAGCGGGGGGGG
GGGGAGGGGTGCTCATGTTTTTCATGCCTTAGCTGTTAGACCACTGACCA
CTCTTTCTCGAGAGGACCGATAATATTTCCCACAGGATCGATCACCGATG
GACAATCGTTCCTTCTTATTCTGCCAAAGGTGGCGCAAAAAACGTTTTTC
CTATCCTGTAGGAGGGGGGGGGGGGGGCAAAGTCGACGCGTTGTCATTCT
GTAACGTATATACAGTAGTGTGCATAACTCGCACTCCAAAGGATGACAAG
CCTGGGCAACCTTGCTCCAATCAAACGATGGACCCCACGCCTTACTTGAA
AGTCAAGTATTTGGAAATTGTCGTCTCAGAGGGGGCAAGGTCGAGTTGTG
TACGTGGGTGGAGGTGGATATTTTGTAACTGGAACACGCCCCGGCAATGA
AGAGGGCGGCGGAGAGTGAGGCGTAGGTCAAACAGAGTGGATACCGCCCT
ATCGTGTCTTCGCCGGTGTGAACAAATGTGAATCAAATCGCGAACTACTA
CTGGAATATGTGCGTGCATGGCGTCTATCGTCCCTGCTTCTACCTATACG
GAAGTAGTCGCGAGGATTGTCGAACGGATCGTCAACGCCTCCGATGCTCC
ACGTTGCTGGTCGGTAACCCCTTACCTTCCGCGTCCACACGTCTCGTGCT
CCACGTCGTGACAAGCAGTGTTTCCGTCCTGGAATGCGACGAAGCCTCGA
TTGTGGAACGACTGGACACAGAGAGTCGACAAGAAACGCCTTCGATGGAT
GGAGGGGCTGGTTTGTTCGACGTCATCTTGCTTGGCGGGGGAAGCGTGGC
AGATGCGACGGAACTGGTTGCGGGTGGCGACGGCGGAGAAACGGACGGGG
TCGAGCGCACACCGGGGGATAGGTTGGACATTTTCCTTGACAGGTAACGC
TCTCAATCTATATTACGTACCAGGTTTTTTTTTTCCCTCTTGTATGAAAC
GACGCGCTTGATTGGGAGTTGCGCACATTCTCCCTGTAGCTGATTTTTCA
ATTTGACAGGTACCCCGCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCGCCGCCCGGGGGCGGGCCGCACCGCTCGGCGCGGGGCG
CAGCGCCACCCAAGGAATGAAGACGATGGCCAGGAAGGACANNNNNNNNN
NGGTGTTTTTTTCCCCCTGGTGGGAAACGGCGGCGTTGGGGGGGGGGGGG
GCCCATTCCCCCCGTGGCGGATTTTTTCATTTTGGGGGGACCCCGCCGCC
CCCCCCCCCCCCCCCGAACTCGCTCGCCCCGTTCAACGGGAGTCGAGATG
CCGTTCACCGATAGGGGCAGGTAAAACCTCGCTAAAAATTGGAGCTTCTT
CTGTCCTTCGTTTCCTAGCTCACTAAATAATAGCAGTATCGAGAAGTCAC
CGAGTCTTGCACGCAAACGTCATTGTCTCAAACGTTAAGTGAGTCTCGAT
ATTGATACAGTCTCAAACTTTAAGTGAGTCGTAATGTTGACCCCACCCCC
CCTCCCCCCTCCCGATCAATTAAAATATTCGCACCCTGTGTTTACTTTGT
CCGCGCCCAGACGTCTGATAAAGAGAAGCGGGCTGGTGCTTTGCGACCCG
AGCGCGCTAGTTGGAGGGAAGGCGGCCGCGCGGCTATTGGTGGCACGAGC
TACGGAAATTAAAGGGACCGTAGAGCACGCCCGCGTGCCATGTGCGGGGC
CGAACGGGGGTCTGCACGTGTTCAAGTGGAAGACGTATTCGCACTGACGC
GTGTTTGTGCCCGCGATTGGTCATGTCGGAGGCGCGGCACTGGCTGCCTG
TCTTTGTTATCGTCGTTTGAATAAGCCCTGCGATACCAATGGAATTTTTT
CGCTCTACATTATATCCTGGTGGCGAAGCAAGCCATGGTATGAGGAGATT
TTTGGTGATTTATATGGTGTTGAAGAGAAGGGTAGATGGGAGAAGGCATT
GGTGCCTGTGTGCATATATGTGAGTATCCTCGTTTTTGCGTGCATTCGAT
GGTTAGTAGACTCAGCGTACGATAGTTGTAGACGACGAGGGACGGGCGCT
CCTATTTGCAGGATCGAGCGCAGTTCTTGTAACGATCGCATCACACGCTC
GCCACACACATTATAGTCGGACCCCCACAAGGTATCATTACACATTGTTA
GGCGGTTGATTGATTATGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8263:5440..7759+

>mRNA_S-dermatodea_contig8263.16462.1 ID=mRNA_S-dermatodea_contig8263.16462.1|Name=mRNA_S-dermatodea_contig8263.16462.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig8263:5440..7759+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGGAGGGGCTGGTTTGTTCGACGTCATCTTGCTTGGCGGGGGAAG
CGTGGCAGATGCGACGGAACTGGTTGCGGGTGGCGACGGCGGAGAAACGG
ACGGGGTCGAGCGCACACCGGGGGATAGGTTGGACATTTTCCTTGACAGA
TGGATGGAGGGGCTGGTTTGTTCGACGTCATCTTGCTTGGCGGGGGAAGC
GTGGCAGATGCGACGGAACTGGTTGCGGGTGGCGACGGCGGAGAAACGGA
CGGGGTCGAGCGCACACCGGGGGATAGGTTGGACATTTTCCTTGACAGAC
GTCTGATAAAGAGAAGCGGGCTGGTGCTTTGCGACCCGAGCGCGCTAGTT
GGAGGGAAGGCGGCCGCGCGGCTATTGGTGGCACGAGCTACGGAAATTAA
AGGGACCGTAGAGCACGCCCGCGTGCCATGTGCGGGGCCGAACGGGGGTC
TGCACGTGTTCAAGTGGAAGACGTATTCGCACTGAACGTCTGATAAAGAG
AAGCGGGCTGGTGCTTTGCGACCCGAGCGCGCTAGTTGGAGGGAAGGCGG
CCGCGCGGCTATTGGTGGCACGAGCTACGGAAATTAAAGGGACCGTAGAG
CACGCCCGCGTGCCATGTGCGGGGCCGAACGGGGGTCTGCACGTGTTCAA
GTGGAAGACGTATTCGCACTGA
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