mRNA_S-dermatodea_contig8262.16461.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8262.16461.1
Unique NamemRNA_S-dermatodea_contig8262.16461.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8262.16461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8262contigS-dermatodea_contig8262:1803..3724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005120.1
Exons3
Model size384
Cds size384
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8262.16461.1prot_S-dermatodea_contig8262.16461.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8262 1803..3724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.3083544-CDS-S-dermatodea_contig8262:1802..18891622925332.3083544-CDS-S-dermatodea_contig8262:1802..1889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8262 1803..1889 +
1694079861.2684708-CDS-S-dermatodea_contig8262:1802..18891694079861.2684708-CDS-S-dermatodea_contig8262:1802..1889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8262 1803..1889 +
1622925332.3197584-CDS-S-dermatodea_contig8262:2314..24381622925332.3197584-CDS-S-dermatodea_contig8262:2314..2438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8262 2315..2438 +
1694079861.2774901-CDS-S-dermatodea_contig8262:2314..24381694079861.2774901-CDS-S-dermatodea_contig8262:2314..2438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8262 2315..2438 +
1622925332.3287022-CDS-S-dermatodea_contig8262:3551..37241622925332.3287022-CDS-S-dermatodea_contig8262:3551..3724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8262 3552..3724 +
1694079861.2864726-CDS-S-dermatodea_contig8262:3551..37241694079861.2864726-CDS-S-dermatodea_contig8262:3551..3724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8262 3552..3724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8262.16461.1

>prot_S-dermatodea_contig8262.16461.1 ID=prot_S-dermatodea_contig8262.16461.1|Name=mRNA_S-dermatodea_contig8262.16461.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
QTAGPGVWLLQGSVCRKWGVRGALPLVSEAILEVSSGEARRDCRRESRGP
VCSKSGRCPAAAKNQTDANKGCRGNLRRPGRRQDSTLLPRASPNASAVQC
PRPQRGRVSEELRQGAQGRRCRLRGPR*
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mRNA from alignment at S-dermatodea_contig8262:1803..3724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8262.16461.1 ID=mRNA_S-dermatodea_contig8262.16461.1|Name=mRNA_S-dermatodea_contig8262.16461.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1922bp|location=Sequence derived from alignment at S-dermatodea_contig8262:1803..3724+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACGGCGGGCCCCGGGGTGTGGCTGCTGCAAGGGTCGGTGTGTCGCAA
GTGGGGTGTGAGAGGAGCACTTCCTCTGGTGTCCGAGGTATGTTGGTGTG
GGAAGGATGCGGGAGAGGGAGGTTGGGGGTGGATACAGAAGGTTTCAGAG
GCCGTGCGCGTACAATAGTGTTCGGAAAATAGTGGATCTCCATCACCGAA
CACTTCCATGTATGTATGATTCGTTTTCGTTTCTGTCGCTTCGGGGATAC
GTTCGGTTGTCCACGGACCTCAGGGGGTGCGATGTCGCCGCGCGTTCTCC
TCGGCACGATGCTCACCTTATCTGCCTATAAAAGCACGAGCAGGATGACG
GTATTTGAAGGGTATCCTTCGCAAACACGTTGTTTCTGCTCCGTTCATGC
ACGGCCGATTGCACTCAGCGCCGTGTATGCAAACGATGACCGCTTGCAAA
GCGCCCAGACAGGTGAAATTCTGAAGGCGCCGTGTTGTATGTGTTTTGTT
TCTGCTTTTCAGGCGATCTTGGAGGTGTCGAGTGGTGAAGCTCGCCGCGA
CTGCAGAAGGGAGTCCCGTGGACCGGTTTGCAGCAAATCAGGGAGGTGTC
CTGCAGCCGCCAAGAACCAAACCGATGCCAATAAAGGTATGAAGTGAGTA
AGGGCGCATAATTTAAGGCTGCTTTCATGAGGCGTTCTGCGAAGAATCGT
GGGAACTGCTTTGCTTCCTCCGCACACGTCTGCGTTGCTTGGATGGTGTC
TGGCCGCCTCCGGACTCTACGGTAGACGACGAGCTATTATAGTACCCGTG
CACAAATCCCCGAAATACTAACAGTACACTTCAAATACAAGAGGGAGCCT
TGAGATCCAGCCCTTTTCGCTTTTAAATTTTGGTGCGAAAGTGGCCCTTA
ACCGTACTACGCGGAGATTGCAGTATAGTGTGGTTATAGTTACTATGCTG
GGACAATTTTTCGGGAGAACGATCGGCATGGACTGCCTTGATATTGGGGC
AGTAGAAACGACACGGAGGTAATCGTGCAGGACGACGGTGTAGCTTCCCT
TGAATCCCAACCCCCCGCCCTCACCAAAACAAACGTGACGACCTCGATCA
AATTTATCACTGATTTTCAAATCCCCCGTTGGTACTTGTATCACGAAAAC
AAACTTGACGACCTCGATCAAATTTATCACTGATTTTCAAATCCCCCGTT
GGTACTTGTATCACGAAAACAAACTTGACAACCTCGATCAAATTTATCAC
TGATTTTCAAACCCTCCGTTGGTACTTGTATGAAGCATTCCATGGTGAGT
TTATTGCGTTGAGCTAAATCTATGTTTTATCAGTGTAGATAATTATGGAG
GAACACAGTAGGTAAATAGAACCATCTTACGAAGCGTACTCCTCGATAAG
AAACAAACTCTGCAAAAGTCAGTATGGTCCGACGACAATATATACTGCAC
AATATTCCCGCCAGAGCTTTCGTTTGTCGTAGAATAAATGTCCTAGAAAT
TTACGAAGAATTACTCGGGTAATTTGGTGGCTTGTCAACAACTCAATATT
TGGGTATGTTAACTATACTCCACCGTAAAGGTTCAAAGATGCTACAGCTT
GACCGCGATGCCCATCCGCGGCGGGAGAAGCAGTGTGAACGACGGCGGCA
GCAGCTTCCACCTCCCACCCCTCCCACCCCTCCCATGCCCTCCTCGCGGT
GTCGTTTCCGCCGCTCCCGCCCCCCTTGGCAATGGCCGGCCTCGAGCAGG
TTGTCGCGGAAACCTTCGGCGCCCCGGCCGACGTCAGGACAGCACTCTGC
TTCCGCGCGCAAGTCCAAATGCCTCCGCTGTACAGTGCCCGAGGCCTCAG
CGCGGCCGTGTATCTGAGGAGCTGCGGCAAGGAGCACAAGGCCGGCGGTG
CCGGCTTCGGGGCCCTCGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8262:1803..3724+

>mRNA_S-dermatodea_contig8262.16461.1 ID=mRNA_S-dermatodea_contig8262.16461.1|Name=mRNA_S-dermatodea_contig8262.16461.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig8262:1803..3724+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACGGCGGGCCCCGGGGTGTGGCTGCTGCAAGGGTCGGTGTGTCGCAA
GTGGGGTGTGAGAGGAGCACTTCCTCTGGTGTCCGAGCAGACGGCGGGCC
CCGGGGTGTGGCTGCTGCAAGGGTCGGTGTGTCGCAAGTGGGGTGTGAGA
GGAGCACTTCCTCTGGTGTCCGAGGCGATCTTGGAGGTGTCGAGTGGTGA
AGCTCGCCGCGACTGCAGAAGGGAGTCCCGTGGACCGGTTTGCAGCAAAT
CAGGGAGGTGTCCTGCAGCCGCCAAGAACCAAACCGATGCCAATAAAGGC
GATCTTGGAGGTGTCGAGTGGTGAAGCTCGCCGCGACTGCAGAAGGGAGT
CCCGTGGACCGGTTTGCAGCAAATCAGGGAGGTGTCCTGCAGCCGCCAAG
AACCAAACCGATGCCAATAAAGGTTGTCGCGGAAACCTTCGGCGCCCCGG
CCGACGTCAGGACAGCACTCTGCTTCCGCGCGCAAGTCCAAATGCCTCCG
CTGTACAGTGCCCGAGGCCTCAGCGCGGCCGTGTATCTGAGGAGCTGCGG
CAAGGAGCACAAGGCCGGCGGTGCCGGCTTCGGGGCCCTCGGTAGGTTGT
CGCGGAAACCTTCGGCGCCCCGGCCGACGTCAGGACAGCACTCTGCTTCC
GCGCGCAAGTCCAAATGCCTCCGCTGTACAGTGCCCGAGGCCTCAGCGCG
GCCGTGTATCTGAGGAGCTGCGGCAAGGAGCACAAGGCCGGCGGTGCCGG
CTTCGGGGCCCTCGGTAG
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