mRNA_S-dermatodea_contig82604.16460.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82604.16460.1
Unique NamemRNA_S-dermatodea_contig82604.16460.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: D8LMN8_ECTSI (WD repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN8_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 6.570e-46
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:    1 PPLPVPTGELVMGGRASRVMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            P  P+  GELV+GGRASRVMRGHNGDVVDLSWS NAFLLSAGRDGSLRLWHP RLGCVHLF QTGAATPTSC+F+PRLENSFAT GEDGKVR
Sbjct:  853 PVPPLRRGELVVGGRASRVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGAATPTSCSFNPRLENSFATGGEDGKVR 944
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BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: A0A6H5KWS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS7_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 6.610e-46
Identity = 80/92 (86.96%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:    1 PPLPVPTGELVMGGRASRVMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            P  P+  GELV+GGRASRVMRGHNGDVVDLSWS NAFLLSAGRDGSLRLWHP RLGCVHLF QTGAATPTSC+F+PRLENSFAT GEDGKVR
Sbjct: 1140 PVPPLRRGELVIGGRASRVMRGHNGDVVDLSWSLNAFLLSAGRDGSLRLWHPARLGCVHLFPQTGAATPTSCSFNPRLENSFATGGEDGKVR 1231
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BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: I2G540_USTH4 (Uncharacterized protein n=3 Tax=Ustilago TaxID=5269 RepID=I2G540_USTH4)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-14
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   52 RVMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            RV   H+GDV+DLSWS N FLLS   D + +LWHP R  C+  FA   AAT +S  FHP  +  F T G DGK+R
Sbjct:  413 RVFAAHSGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRSECLCTFAT--AATVSSVDFHPTDDRFFVTGGLDGKLR 485
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BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: M9M194_PSEA3 (WD40 repeat-containing protein n=3 Tax=Moesziomyces TaxID=63261 RepID=M9M194_PSEA3)

HSP 1 Score: 77.4 bits (189), Expect = 1.360e-14
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   52 RVMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            RV  GH GDV+DLSWS N FLLS   D + +LWHP R  C+  F+   AA  +S  FHPR +  F T G DGK+R
Sbjct:  596 RVFAGHVGDVMDLSWSKNNFLLSCSSDKTAKLWHPNRAECLCTFST--AAIVSSVDFHPRDDRFFVTGGLDGKLR 668
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BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: A0A4U7L1T4_9BASI (Uncharacterized protein n=1 Tax=Sporisorium graminicola TaxID=280036 RepID=A0A4U7L1T4_9BASI)

HSP 1 Score: 77.0 bits (188), Expect = 1.850e-14
Identity = 39/74 (52.70%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:   55 VMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            V  GH GDV+DLSWS N FLLS   D + RLWHP R  C+  F  T +AT +S  FHP  +  F T G DGK+R
Sbjct:  554 VFAGHTGDVLDLSWSKNNFLLSCSSDKTARLWHPNRSDCLCTF--TTSATVSSVDFHPVDDRFFVTGGLDGKLR 625
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BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: V5GKH9_KALBG (Uncharacterized protein n=1 Tax=Kalmanozyma brasiliensis (strain GHG001) TaxID=1365824 RepID=V5GKH9_KALBG)

HSP 1 Score: 76.6 bits (187), Expect = 2.390e-14
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   55 VMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            V  GH+GD++DLSWS N FLLS G D + +LWHP R  C+  F  T +A  +S  FHP  +  F T G DGK+R
Sbjct:  154 VFAGHSGDILDLSWSKNNFLLSCGSDKTAKLWHPNREDCLCTF--TTSAVVSSIDFHPTDDRFFVTGGLDGKLR 225
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BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: A0A077R3E4_9BASI (Wd repeat protein n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077R3E4_9BASI)

HSP 1 Score: 76.6 bits (187), Expect = 2.520e-14
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   52 RVMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            R+  GH GDV+DLSWS N FLLS   D + +LWHP R GC+  F+ +  AT +S  FHP  +  F T G D K+R
Sbjct:  570 RIFSGHTGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRTGCLCTFSTS--ATVSSVDFHPTDDRFFVTGGLDCKLR 642
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BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: A0A5C3DRX1_9BASI (Uncharacterized protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3DRX1_9BASI)

HSP 1 Score: 75.1 bits (183), Expect = 8.780e-14
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   52 RVMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            R+  GH+GDV+DLSWS N FLLS   D + +LWHP R  C+  F+ +  A  +S  FHP  +  F T G DGK+R
Sbjct:  575 RIFAGHSGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRSDCLCTFSTS--AIVSSIDFHPTDDRFFVTGGLDGKLR 647
[Close]
BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: E6ZKT8_SPORE (Uncharacterized protein n=2 Tax=Sporisorium reilianum TaxID=72558 RepID=E6ZKT8_SPORE)

HSP 1 Score: 74.7 bits (182), Expect = 1.180e-13
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   55 VMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            V  GH GDV+DLSWS N FLLS   D + RLWHP R  C+  F  T +A  +S  FHP  +  F T G DGK+R
Sbjct:  382 VFAGHTGDVLDLSWSKNNFLLSCSSDKTARLWHPNRSDCLCTF--TTSAIVSSVDFHPVDDRFFVTGGLDGKLR 453
[Close]
BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Match: A0A5C3DT80_9BASI (Uncharacterized protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3DT80_9BASI)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-13
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   52 RVMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLWHPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR 276
            R+  GH GDV+DLSWS N FLLS   D + +LWHP R  C+  F+ +  A  +S  FHP  +  F T G DGK+R
Sbjct:  575 RIFAGHGGDVLDLSWSKNNFLLSCSSDKTAKLWHPNRSDCLCTFSTS--AIVSSIDFHPTDDRFFVTGGLDGKLR 647
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82604.16460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN8_ECTSI6.570e-4686.96WD repeat protein (Partial) (Fragment) n=1 Tax=Ect... [more]
A0A6H5KWS7_9PHAE6.610e-4686.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I2G540_USTH41.340e-1452.00Uncharacterized protein n=3 Tax=Ustilago TaxID=526... [more]
M9M194_PSEA31.360e-1452.00WD40 repeat-containing protein n=3 Tax=Moesziomyce... [more]
A0A4U7L1T4_9BASI1.850e-1452.70Uncharacterized protein n=1 Tax=Sporisorium gramin... [more]
V5GKH9_KALBG2.390e-1450.00Uncharacterized protein n=1 Tax=Kalmanozyma brasil... [more]
A0A077R3E4_9BASI2.520e-1449.33Wd repeat protein n=1 Tax=Melanopsichium pennsylva... [more]
A0A5C3DRX1_9BASI8.780e-1448.00Uncharacterized protein n=1 Tax=Ustilago trichopho... [more]
E6ZKT8_SPORE1.180e-1351.35Uncharacterized protein n=2 Tax=Sporisorium reilia... [more]
A0A5C3DT80_9BASI1.200e-1348.00Uncharacterized protein n=1 Tax=Ustilago trichopho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82604contigS-dermatodea_contig82604:145..420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue4.8e-39
Seed eggNOG ortholog2880.D8LMN8
Preferred nameWDR44
KEGG koko:K20241
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-02_002470.1
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.2770014-CDS-S-dermatodea_contig82604:144..4201622925332.2770014-CDS-S-dermatodea_contig82604:144..420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82604 145..420 -
1694079861.251519-CDS-S-dermatodea_contig82604:144..4201694079861.251519-CDS-S-dermatodea_contig82604:144..420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82604 145..420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82604.16460.1prot_S-dermatodea_contig82604.16460.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82604 145..420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82604.16460.1

>prot_S-dermatodea_contig82604.16460.1 ID=prot_S-dermatodea_contig82604.16460.1|Name=mRNA_S-dermatodea_contig82604.16460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
PPLPVPTGELVMGGRASRVMRGHNGDVVDLSWSPNAFLLSAGRDGSLRLW
HPGRLGCVHLFAQTGAATPTSCAFHPRLENSFATAGEDGKVR
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mRNA from alignment at S-dermatodea_contig82604:145..420-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82604.16460.1 ID=mRNA_S-dermatodea_contig82604.16460.1|Name=mRNA_S-dermatodea_contig82604.16460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig82604:145..420- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCCCCTCCCGGTCCCGACCGGAGAGCTGGTCATGGGAGGCCGCGCGTC
ACGAGTCATGAGGGGGCACAACGGCGACGTCGTCGACCTGTCATGGTCCC
CGAACGCTTTCCTGCTCTCGGCCGGCCGCGACGGCAGCTTGAGGCTGTGG
CACCCGGGGAGGCTTGGGTGTGTCCACCTGTTCGCGCAGACCGGAGCGGC
GACCCCGACGTCTTGCGCGTTTCACCCGCGGCTGGAGAACTCGTTCGCCA
CCGCCGGGGAGGACGGGAAGGTGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig82604:145..420-

>mRNA_S-dermatodea_contig82604.16460.1 ID=mRNA_S-dermatodea_contig82604.16460.1|Name=mRNA_S-dermatodea_contig82604.16460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig82604:145..420- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCCCCTCCCGGTCCCGACCGGAGAGCTGGTCATGGGAGGCCGCGCGTC
ACGAGTCATGAGGGGGCACAACGGCGACGTCGTCGACCTGTCATGGTCCC
CGAACGCTTTCCTGCTCTCGGCCGGCCGCGACGGCAGCTTGAGGCTGTGG
CACCCGGGGAGGCTTGGGTGTGTCCACCTGTTCGCGCAGACCGGAGCGGC
GACCCCGACGTCTTGCGCGTTTCACCCGCGGCTGGAGAACTCGTTCGCCA
CCGCCGGGGAGGACGGGAAGGTGAGGCCTCCCCTCCCGGTCCCGACCGGA
GAGCTGGTCATGGGAGGCCGCGCGTCACGAGTCATGAGGGGGCACAACGG
CGACGTCGTCGACCTGTCATGGTCCCCGAACGCTTTCCTGCTCTCGGCCG
GCCGCGACGGCAGCTTGAGGCTGTGGCACCCGGGGAGGCTTGGGTGTGTC
CACCTGTTCGCGCAGACCGGAGCGGCGACCCCGACGTCTTGCGCGTTTCA
CCCGCGGCTGGAGAACTCGTTCGCCACCGCCGGGGAGGACGGGAAGGTGA
GG
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