mRNA_S-dermatodea_contig8260.16459.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8260.16459.1
Unique NamemRNA_S-dermatodea_contig8260.16459.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8260.16459.1 vs. uniprot
Match: D7FVY8_ECTSI (Zinc finger, FYVE domain containing 19, isoform CRA_g n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVY8_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.090e-22
Identity = 57/99 (57.58%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:   13 RDRRERR--PPDEEESSSWCGICSEDAAVRCRQCEADNGCGDADDDDEPELFCARCFKEVHRGDPEMMAHRPEALSRSGRKGQGKGEGGERKGWRNWRK 303
            RDRR+    P DE  SSSWC ICSEDA++RCR CE +NG       DEPELFCARCFKE HRGD EM  H+P+ALSR+ ++     E   RKG R WR+
Sbjct:  303 RDRRQAAACPKDEALSSSWCCICSEDASLRCRPCERENG------QDEPELFCARCFKETHRGDSEMEVHQPQALSRARQQ-----EEDGRKGRRTWRR 390
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BLAST of mRNA_S-dermatodea_contig8260.16459.1 vs. uniprot
Match: A0A1B7P222_9EURO (Uncharacterized protein n=1 Tax=Emergomyces africanus TaxID=1955775 RepID=A0A1B7P222_9EURO)

HSP 1 Score: 51.6 bits (122), Expect = 9.570e-5
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 1 
Query:   61 WCGICSEDAAVRCRQCEADNGCGDADDDDEPELFCARCFKEVH--RGDPEMMAHRPEALSRSGR 246
            WC ICS+DA+V+C  C+A+             L+C+RC++EVH   GD E  AHR     R  R
Sbjct:  283 WCCICSDDASVKCVNCDAEL------------LYCSRCWREVHVEEGDAEEKAHRQVRFERDNR 334
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8260.16459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVY8_ECTSI2.090e-2257.58Zinc finger, FYVE domain containing 19, isoform CR... [more]
A0A1B7P222_9EURO9.570e-540.63Uncharacterized protein n=1 Tax=Emergomyces africa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8260contigS-dermatodea_contig8260:1807..2277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionzinc finger, FYVE domain containing 19, isoform CRA_g
Ec32 orthologEc-01_002660.1
Exons1
Model size472
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.2313833-CDS-S-dermatodea_contig8260:1806..21121622925332.2313833-CDS-S-dermatodea_contig8260:1806..2112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8260 1807..2112 +
1694079861.2319875-CDS-S-dermatodea_contig8260:1806..21121694079861.2319875-CDS-S-dermatodea_contig8260:1806..2112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8260 1807..2112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925332.2456949-UTR-S-dermatodea_contig8260:2112..22771622925332.2456949-UTR-S-dermatodea_contig8260:2112..2277Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8260 2113..2277 +
1694079861.2405977-UTR-S-dermatodea_contig8260:2112..22771694079861.2405977-UTR-S-dermatodea_contig8260:2112..2277Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8260 2113..2277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8260.16459.1prot_S-dermatodea_contig8260.16459.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8260 1807..2112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8260.16459.1

>prot_S-dermatodea_contig8260.16459.1 ID=prot_S-dermatodea_contig8260.16459.1|Name=mRNA_S-dermatodea_contig8260.16459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
AGRARDRRERRPPDEEESSSWCGICSEDAAVRCRQCEADNGCGDADDDDE
PELFCARCFKEVHRGDPEMMAHRPEALSRSGRKGQGKGEGGERKGWRNWR
K*
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mRNA from alignment at S-dermatodea_contig8260:1807..2277+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8260.16459.1 ID=mRNA_S-dermatodea_contig8260.16459.1|Name=mRNA_S-dermatodea_contig8260.16459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at S-dermatodea_contig8260:1807..2277+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGGCCGGGCGCGCGATCGCAGGGAACGGCGACCCCCAGACGAGGAAGA
GTCGTCTTCGTGGTGCGGCATTTGTTCGGAGGACGCGGCCGTTAGGTGCA
GACAGTGCGAAGCCGATAATGGATGCGGGGACGCGGATGACGATGACGAG
CCCGAGCTGTTTTGCGCAAGGTGCTTCAAGGAGGTTCACCGAGGAGATCC
TGAGATGATGGCGCATCGACCGGAGGCGTTATCGAGATCAGGACGCAAGG
GACAAGGGAAGGGGGAGGGCGGCGAACGGAAGGGCTGGCGGAACTGGCGG
AAATAAACGTCAAACTATATTAATAAGAGATTTCCGTTGGGTTTTCGATG
TATCATCTGACCACACGAGCGGGATCGGCGACCATTGGTTCCTTGCTGGT
GGGTCGATCAGTTGTAAGTGTGATAAGTCAGTCAATGAAACCAACAAACC
AATCAATAAACTGCAACGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8260:1807..2277+

>mRNA_S-dermatodea_contig8260.16459.1 ID=mRNA_S-dermatodea_contig8260.16459.1|Name=mRNA_S-dermatodea_contig8260.16459.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig8260:1807..2277+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGGCCGGGCGCGCGATCGCAGGGAACGGCGACCCCCAGACGAGGAAGA
GTCGTCTTCGTGGTGCGGCATTTGTTCGGAGGACGCGGCCGTTAGGTGCA
GACAGTGCGAAGCCGATAATGGATGCGGGGACGCGGATGACGATGACGAG
CCCGAGCTGTTTTGCGCAAGGTGCTTCAAGGAGGTTCACCGAGGAGATCC
TGAGATGATGGCGCATCGACCGGAGGCGTTATCGAGATCAGGACGCAAGG
GACAAGGGAAGGGGGAGGGCGGCGAACGGAAGGGCTGGCGGAACTGGCGG
AAATAAGCAGGCCGGGCGCGCGATCGCAGGGAACGGCGACCCCCAGACGA
GGAAGAGTCGTCTTCGTGGTGCGGCATTTGTTCGGAGGACGCGGCCGTTA
GGTGCAGACAGTGCGAAGCCGATAATGGATGCGGGGACGCGGATGACGAT
GACGAGCCCGAGCTGTTTTGCGCAAGGTGCTTCAAGGAGGTTCACCGAGG
AGATCCTGAGATGATGGCGCATCGACCGGAGGCGTTATCGAGATCAGGAC
GCAAGGGACAAGGGAAGGGGGAGGGCGGCGAACGGAAGGGCTGGCGGAAC
TGGCGGAAATAA
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