mRNA_S-dermatodea_contig826.16455.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig826.16455.1
Unique NamemRNA_S-dermatodea_contig826.16455.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig826.16455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig826contigS-dermatodea_contig826:1199..1666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.8934135-CDS-S-dermatodea_contig826:1198..16661622925331.8934135-CDS-S-dermatodea_contig826:1198..1666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig826 1199..1666 +
1694079860.9615831-CDS-S-dermatodea_contig826:1198..16661694079860.9615831-CDS-S-dermatodea_contig826:1198..1666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig826 1199..1666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig826.16455.1prot_S-dermatodea_contig826.16455.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig826 1199..1666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig826.16455.1

>prot_S-dermatodea_contig826.16455.1 ID=prot_S-dermatodea_contig826.16455.1|Name=mRNA_S-dermatodea_contig826.16455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=156bp
VPPRGNGPHPARIRSRSQPDKPRGRLHRPNDGLLQEAGPRRNRRAASRCG
CGSNAQGPSGVDGDALGSVRRKHRRAQARVAEGARHAQCIHRPVQDAAVY
GRGRWLRRNGLLPAEGGRRTAVLRPGNLPMPADGGSARWPHGGRARPRRG
PSGPGG
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mRNA from alignment at S-dermatodea_contig826:1199..1666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig826.16455.1 ID=mRNA_S-dermatodea_contig826.16455.1|Name=mRNA_S-dermatodea_contig826.16455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig826:1199..1666+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCCACCGCGTGGAAACGGTCCGCACCCTGCTCGAATTCGGAGCCGATC
CCAACCCGATAAACCCCGAGGACGGCTACACCGCCCTAATGACGGCCTGC
TCCAAGAGGCAGGGCCGCGTCGAAACCGTCGAGCTGCTTCTCGATGCGGG
TGCGGATCCAATGCTCAGGGACCGAGTGGGGTGGACGGCGACGCACTCGG
CAGCGTGCGTCGGAAACACCGCCGCGCTCAAGCTCGTGTTGCCGAAGGCG
CCCGACACGCTCAATGCATTCACCGCCCAGTCCAGGACGCCGCTGTGTAT
GGCCGCGGCCGATGGCTACGCCGAAACGGTCTCCTTCCTGCTGAAGGAGG
GCGCCGCACAGCCGTCCTGCGCCCAGGCAACCTTCCCATGCCCGCTGATG
GTGGCAGTGCACGGTGGCCACACGGAGGTCGTGCGCGTCCTCGTCGAGGG
CCGAGCGGTCCAGGCGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig826:1199..1666+

>mRNA_S-dermatodea_contig826.16455.1 ID=mRNA_S-dermatodea_contig826.16455.1|Name=mRNA_S-dermatodea_contig826.16455.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig826:1199..1666+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCCACCGCGTGGAAACGGTCCGCACCCTGCTCGAATTCGGAGCCGATC
CCAACCCGATAAACCCCGAGGACGGCTACACCGCCCTAATGACGGCCTGC
TCCAAGAGGCAGGGCCGCGTCGAAACCGTCGAGCTGCTTCTCGATGCGGG
TGCGGATCCAATGCTCAGGGACCGAGTGGGGTGGACGGCGACGCACTCGG
CAGCGTGCGTCGGAAACACCGCCGCGCTCAAGCTCGTGTTGCCGAAGGCG
CCCGACACGCTCAATGCATTCACCGCCCAGTCCAGGACGCCGCTGTGTAT
GGCCGCGGCCGATGGCTACGCCGAAACGGTCTCCTTCCTGCTGAAGGAGG
GCGCCGCACAGCCGTCCTGCGCCCAGGCAACCTTCCCATGCCCGCTGATG
GTGGCAGTGCACGGTGGCCACACGGAGGTCGTGCGCGTCCTCGTCGAGGG
CCGAGCGGTCCAGGCGGTGTGCCACCGCGTGGAAACGGTCCGCACCCTGC
TCGAATTCGGAGCCGATCCCAACCCGATAAACCCCGAGGACGGCTACACC
GCCCTAATGACGGCCTGCTCCAAGAGGCAGGGCCGCGTCGAAACCGTCGA
GCTGCTTCTCGATGCGGGTGCGGATCCAATGCTCAGGGACCGAGTGGGGT
GGACGGCGACGCACTCGGCAGCGTGCGTCGGAAACACCGCCGCGCTCAAG
CTCGTGTTGCCGAAGGCGCCCGACACGCTCAATGCATTCACCGCCCAGTC
CAGGACGCCGCTGTGTATGGCCGCGGCCGATGGCTACGCCGAAACGGTCT
CCTTCCTGCTGAAGGAGGGCGCCGCACAGCCGTCCTGCGCCCAGGCAACC
TTCCCATGCCCGCTGATGGTGGCAGTGCACGGTGGCCACACGGAGGTCGT
GCGCGTCCTCGTCGAGGGCCGAGCGGTCCAGGCGGT
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