mRNA_S-dermatodea_contig8250.16448.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8250.16448.1
Unique NamemRNA_S-dermatodea_contig8250.16448.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8250.16448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8250contigS-dermatodea_contig8250:3624..4301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size679
Cds size549
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.5601392-UTR-S-dermatodea_contig8250:3623..37521622925331.5601392-UTR-S-dermatodea_contig8250:3623..3752Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8250 3624..3752 +
1694079860.7778876-UTR-S-dermatodea_contig8250:3623..37521694079860.7778876-UTR-S-dermatodea_contig8250:3623..3752Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8250 3624..3752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.570548-CDS-S-dermatodea_contig8250:3752..43011622925331.570548-CDS-S-dermatodea_contig8250:3752..4301Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8250 3753..4301 +
1694079860.788291-CDS-S-dermatodea_contig8250:3752..43011694079860.788291-CDS-S-dermatodea_contig8250:3752..4301Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8250 3753..4301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8250.16448.1prot_S-dermatodea_contig8250.16448.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8250 3753..4301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8250.16448.1

>prot_S-dermatodea_contig8250.16448.1 ID=prot_S-dermatodea_contig8250.16448.1|Name=mRNA_S-dermatodea_contig8250.16448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=183bp
MAGFRGSNCSDDDEVEVLDLTDAPPPVPRSRARPNARATQPAAVAAQAAS
LSSNDDIRVGAEPYGGSDDDEDEFGVSRELPLRERLKLKAEMRAAAAGLG
ASSSSSSCVAKQSQQRRHRQGSKPSASDTSSRSSSAPSVAMAGEQTMSLD
VSSDDDCGGGGCDRGDRFGNKGKSRARHSEAAG
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mRNA from alignment at S-dermatodea_contig8250:3624..4301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8250.16448.1 ID=mRNA_S-dermatodea_contig8250.16448.1|Name=mRNA_S-dermatodea_contig8250.16448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig8250:3624..4301+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGCACCAGGCACACCACAGCAGCAACAGCGGAATATCCCTTTCCAGCT
GGGAAGGGAACACACGACCACCCTCGCTCGAGCAAGATATTGACGCGCCT
TGGCCACTGGCACAACCGGCACCGGAAAGATGGCAGGATTTCGGGGAAGC
AACTGTTCGGACGACGACGAGGTCGAAGTGCTCGACCTTACAGATGCTCC
TCCTCCGGTGCCTCGTAGTAGGGCAAGGCCCAACGCGCGCGCGACGCAGC
CCGCAGCAGTAGCGGCTCAAGCGGCATCACTGAGCAGCAACGACGACATT
AGGGTGGGAGCAGAGCCTTATGGTGGCAGCGATGACGACGAGGACGAATT
CGGGGTGAGCCGGGAGCTCCCGCTTCGGGAGCGGCTGAAACTGAAGGCCG
AGATGCGGGCAGCGGCGGCGGGATTGGGCGCATCATCATCGTCATCATCA
TGCGTCGCCAAGCAGAGCCAGCAGCGGCGGCACCGGCAGGGGTCGAAACC
AAGCGCTAGCGACACGTCTTCACGATCATCTTCCGCACCTTCGGTGGCGA
TGGCGGGGGAGCAGACCATGTCGCTTGATGTCTCCTCGGACGACGACTGC
GGCGGTGGTGGGTGTGACCGCGGTGATCGCTTCGGGAACAAGGGCAAGTC
GAGGGCGAGGCACTCGGAAGCGGCCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8250:3624..4301+

>mRNA_S-dermatodea_contig8250.16448.1 ID=mRNA_S-dermatodea_contig8250.16448.1|Name=mRNA_S-dermatodea_contig8250.16448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at S-dermatodea_contig8250:3624..4301+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGGATTTCGGGGAAGCAACTGTTCGGACGACGACGAGGTCGAAGT
GCTCGACCTTACAGATGCTCCTCCTCCGGTGCCTCGTAGTAGGGCAAGGC
CCAACGCGCGCGCGACGCAGCCCGCAGCAGTAGCGGCTCAAGCGGCATCA
CTGAGCAGCAACGACGACATTAGGGTGGGAGCAGAGCCTTATGGTGGCAG
CGATGACGACGAGGACGAATTCGGGGTGAGCCGGGAGCTCCCGCTTCGGG
AGCGGCTGAAACTGAAGGCCGAGATGCGGGCAGCGGCGGCGGGATTGGGC
GCATCATCATCGTCATCATCATGCGTCGCCAAGCAGAGCCAGCAGCGGCG
GCACCGGCAGGGGTCGAAACCAAGCGCTAGCGACACGTCTTCACGATCAT
CTTCCGCACCTTCGGTGGCGATGGCGGGGGAGCAGACCATGTCGCTTGAT
GTCTCCTCGGACGACGACTGCGGCGGTGGTGGGTGTGACCGCGGTGATCG
CTTCGGGAACAAGGGCAAGTCGAGGGCGAGGCACTCGGAAGCGGCCGGCA
TGGCAGGATTTCGGGGAAGCAACTGTTCGGACGACGACGAGGTCGAAGTG
CTCGACCTTACAGATGCTCCTCCTCCGGTGCCTCGTAGTAGGGCAAGGCC
CAACGCGCGCGCGACGCAGCCCGCAGCAGTAGCGGCTCAAGCGGCATCAC
TGAGCAGCAACGACGACATTAGGGTGGGAGCAGAGCCTTATGGTGGCAGC
GATGACGACGAGGACGAATTCGGGGTGAGCCGGGAGCTCCCGCTTCGGGA
GCGGCTGAAACTGAAGGCCGAGATGCGGGCAGCGGCGGCGGGATTGGGCG
CATCATCATCGTCATCATCATGCGTCGCCAAGCAGAGCCAGCAGCGGCGG
CACCGGCAGGGGTCGAAACCAAGCGCTAGCGACACGTCTTCACGATCATC
TTCCGCACCTTCGGTGGCGATGGCGGGGGAGCAGACCATGTCGCTTGATG
TCTCCTCGGACGACGACTGCGGCGGTGGTGGGTGTGACCGCGGTGATCGC
TTCGGGAACAAGGGCAAGTCGAGGGCGAGGCACTCGGAAGCGGCCGGC
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