mRNA_S-dermatodea_contig82473.16446.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82473.16446.1
Unique NamemRNA_S-dermatodea_contig82473.16446.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82473.16446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82473contigS-dermatodea_contig82473:241..743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82473.16446.1prot_S-dermatodea_contig82473.16446.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82473 319..690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.4161315-UTR-S-dermatodea_contig82473:240..3181622925331.4161315-UTR-S-dermatodea_contig82473:240..318Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82473 241..318 +
1694079860.7025542-UTR-S-dermatodea_contig82473:240..3181694079860.7025542-UTR-S-dermatodea_contig82473:240..318Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82473 241..318 +
1622925331.4362988-UTR-S-dermatodea_contig82473:690..7431622925331.4362988-UTR-S-dermatodea_contig82473:690..743Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82473 691..743 +
1694079860.7240412-UTR-S-dermatodea_contig82473:690..7431694079860.7240412-UTR-S-dermatodea_contig82473:690..743Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82473 691..743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.4261582-CDS-S-dermatodea_contig82473:318..6901622925331.4261582-CDS-S-dermatodea_contig82473:318..690Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82473 319..690 +
1694079860.7136552-CDS-S-dermatodea_contig82473:318..6901694079860.7136552-CDS-S-dermatodea_contig82473:318..690Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82473 319..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82473.16446.1

>prot_S-dermatodea_contig82473.16446.1 ID=prot_S-dermatodea_contig82473.16446.1|Name=mRNA_S-dermatodea_contig82473.16446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
MRRLGRSPPGDRRRRFFAKTPGTKSTRGGSRWKRPGCSRTELARGAVGPS
WKALGWVPGGTFGGLHHRRWRGSRHRSRWCGRRQLVRPWPSYRSPRRRRR
GSARPRLAMMPTPKGEAGGGFRR*
back to top

mRNA from alignment at S-dermatodea_contig82473:241..743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82473.16446.1 ID=mRNA_S-dermatodea_contig82473.16446.1|Name=mRNA_S-dermatodea_contig82473.16446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=503bp|location=Sequence derived from alignment at S-dermatodea_contig82473:241..743+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGGTGGTCGGCGGCGATGAGTTGAGCAGCCGCTTTCGCCGCCGCGTCG
TGGAGGTCTTTAGCCCCATCGATCACGCATGCGGCGCCTCGGGAGATCAC
CCCCTGGCGATCGTCGAAGGAGATTTTTTGCCAAAACTCCGGGTACAAAA
AGTACGAGGGGGGGCAGTCGCTGGAAACGTCCGGGCTGTAGTCGGACAGA
GCTTGCACGTGGGGCGGTGGGGCCATCCTGGAAGGCACTGGGCTGGGTAC
CAGGCGGGACGTTCGGTGGGCTCCACCACCGGCGCTGGCGCGGAAGTCGC
CATCGGAGCCGTTGGTGCGGCCGACGCCAGTTGGTGCGGCCGTGGCCGTC
TTATCGCTCCCCTCGGCGGCGTCGGAGAGGCAGTGCCCGGCCTCGCTTGG
CGATGATGCCGACACCGAAGGGGGAAGCGGGGGGGGGCTTTCGCCGGTAG
TACTTGCCGGTTGGTCTTGGCCGGTGAGCGTAGGGTTTGTCGACATCGTT
GAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig82473:241..743+

>mRNA_S-dermatodea_contig82473.16446.1 ID=mRNA_S-dermatodea_contig82473.16446.1|Name=mRNA_S-dermatodea_contig82473.16446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig82473:241..743+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGCGCCTCGGGAGATCACCCCCTGGCGATCGTCGAAGGAGATTTTT
TGCCAAAACTCCGGGTACAAAAAGTACGAGGGGGGGCAGTCGCTGGAAAC
GTCCGGGCTGTAGTCGGACAGAGCTTGCACGTGGGGCGGTGGGGCCATCC
TGGAAGGCACTGGGCTGGGTACCAGGCGGGACGTTCGGTGGGCTCCACCA
CCGGCGCTGGCGCGGAAGTCGCCATCGGAGCCGTTGGTGCGGCCGACGCC
AGTTGGTGCGGCCGTGGCCGTCTTATCGCTCCCCTCGGCGGCGTCGGAGA
GGCAGTGCCCGGCCTCGCTTGGCGATGATGCCGACACCGAAGGGGGAAGC
GGGGGGGGGCTTTCGCCGGTAGATGCGGCGCCTCGGGAGATCACCCCCTG
GCGATCGTCGAAGGAGATTTTTTGCCAAAACTCCGGGTACAAAAAGTACG
AGGGGGGGCAGTCGCTGGAAACGTCCGGGCTGTAGTCGGACAGAGCTTGC
ACGTGGGGCGGTGGGGCCATCCTGGAAGGCACTGGGCTGGGTACCAGGCG
GGACGTTCGGTGGGCTCCACCACCGGCGCTGGCGCGGAAGTCGCCATCGG
AGCCGTTGGTGCGGCCGACGCCAGTTGGTGCGGCCGTGGCCGTCTTATCG
CTCCCCTCGGCGGCGTCGGAGAGGCAGTGCCCGGCCTCGCTTGGCGATGA
TGCCGACACCGAAGGGGGAAGCGGGGGGGGGCTTTCGCCGGTAG
back to top