mRNA_S-dermatodea_contig8247.16445.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8247.16445.1
Unique NamemRNA_S-dermatodea_contig8247.16445.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8247.16445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8247contigS-dermatodea_contig8247:2554..2930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8247.16445.1prot_S-dermatodea_contig8247.16445.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8247 2589..2906 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.359538-UTR-S-dermatodea_contig8247:2553..25881622925331.359538-UTR-S-dermatodea_contig8247:2553..2588Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8247 2554..2588 +
1694079860.6671448-UTR-S-dermatodea_contig8247:2553..25881694079860.6671448-UTR-S-dermatodea_contig8247:2553..2588Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8247 2554..2588 +
1622925331.3803706-UTR-S-dermatodea_contig8247:2906..29301622925331.3803706-UTR-S-dermatodea_contig8247:2906..2930Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8247 2907..2930 +
1694079860.6911342-UTR-S-dermatodea_contig8247:2906..29301694079860.6911342-UTR-S-dermatodea_contig8247:2906..2930Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8247 2907..2930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.370926-CDS-S-dermatodea_contig8247:2588..29061622925331.370926-CDS-S-dermatodea_contig8247:2588..2906Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8247 2589..2906 +
1694079860.6812634-CDS-S-dermatodea_contig8247:2588..29061694079860.6812634-CDS-S-dermatodea_contig8247:2588..2906Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8247 2589..2906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8247.16445.1

>prot_S-dermatodea_contig8247.16445.1 ID=prot_S-dermatodea_contig8247.16445.1|Name=mRNA_S-dermatodea_contig8247.16445.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MPSGVPNHRSYSLIPSLRHPTLSRFRDKQQAKITKIHEIEPARGDRRRSH
KKRGEGKAGGRKGRGAGRKLTTRTEPELESNKTDARSSPIHLRECGEETR
SSAKP*
back to top

mRNA from alignment at S-dermatodea_contig8247:2554..2930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8247.16445.1 ID=mRNA_S-dermatodea_contig8247.16445.1|Name=mRNA_S-dermatodea_contig8247.16445.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=377bp|location=Sequence derived from alignment at S-dermatodea_contig8247:2554..2930+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCAAACTTATCCGGCGCCCCCGTCAAAACTCCGCATGCCTTCGGGCGTC
CCTAACCACCGATCCTACAGCCTAATCCCGTCCCTACGACACCCAACACT
CTCACGTTTTCGCGACAAGCAGCAAGCGAAGATCACAAAAATACACGAGA
TCGAACCGGCGCGCGGAGATCGGCGCCGGAGCCACAAGAAAAGAGGGGAG
GGGAAAGCGGGAGGACGGAAAGGGAGGGGGGCGGGACGCAAGCTAACCAC
ACGGACGGAGCCAGAGCTTGAGAGCAACAAAACGGACGCCCGTTCATCGC
CGATTCATCTTCGCGAATGCGGCGAGGAAACGCGATCCTCTGCCAAACCG
TGATCACGTCCCACCCCACAAACAACG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8247:2554..2930+

>mRNA_S-dermatodea_contig8247.16445.1 ID=mRNA_S-dermatodea_contig8247.16445.1|Name=mRNA_S-dermatodea_contig8247.16445.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig8247:2554..2930+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTTCGGGCGTCCCTAACCACCGATCCTACAGCCTAATCCCGTCCCT
ACGACACCCAACACTCTCACGTTTTCGCGACAAGCAGCAAGCGAAGATCA
CAAAAATACACGAGATCGAACCGGCGCGCGGAGATCGGCGCCGGAGCCAC
AAGAAAAGAGGGGAGGGGAAAGCGGGAGGACGGAAAGGGAGGGGGGCGGG
ACGCAAGCTAACCACACGGACGGAGCCAGAGCTTGAGAGCAACAAAACGG
ACGCCCGTTCATCGCCGATTCATCTTCGCGAATGCGGCGAGGAAACGCGA
TCCTCTGCCAAACCGTGAATGCCTTCGGGCGTCCCTAACCACCGATCCTA
CAGCCTAATCCCGTCCCTACGACACCCAACACTCTCACGTTTTCGCGACA
AGCAGCAAGCGAAGATCACAAAAATACACGAGATCGAACCGGCGCGCGGA
GATCGGCGCCGGAGCCACAAGAAAAGAGGGGAGGGGAAAGCGGGAGGACG
GAAAGGGAGGGGGGCGGGACGCAAGCTAACCACACGGACGGAGCCAGAGC
TTGAGAGCAACAAAACGGACGCCCGTTCATCGCCGATTCATCTTCGCGAA
TGCGGCGAGGAAACGCGATCCTCTGCCAAACCGTGA
back to top