mRNA_S-dermatodea_contig8245.16444.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8245.16444.1
Unique NamemRNA_S-dermatodea_contig8245.16444.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8245.16444.1 vs. uniprot
Match: A0A6H5KPL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.860e-25
Identity = 66/137 (48.18%), Postives = 75/137 (54.74%), Query Frame = 1 
Query:  454 ITGLQTLREYLCMNGTDALECGRRTVVATLTRALLGSWDGSVHM----------------------------------------------GRQLFDQSVLKNPDRSGPVGLGLEMLVQSLAQDDANCAVEDEGTTTG 726
            +TGLQTL+EYLCMNG D ++CGRRTVVATLTRALLGSW+GS  M                                              GR+LFDQSVLKNPDRSGPVGLGLE+L+Q L QDD     +D     G
Sbjct:   17 VTGLQTLQEYLCMNGRDTVDCGRRTVVATLTRALLGSWEGSATMQQNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSLPRTRVSRFQGRELFDQSVLKNPDRSGPVGLGLEVLLQCLVQDDGAFGQQDMAVEAG 153
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BLAST of mRNA_S-dermatodea_contig8245.16444.1 vs. uniprot
Match: D7FLH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH9_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.100e-22
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:  490 MNGTDALECGRRTVVATLTRALLGSWDGSVHMGRQLFDQSVLKNPDRSGPVGLGLEMLVQSLAQDDAN 693
            MNG D ++CGRRTVVATLTRALL SW+GS  +GR+LFDQSVLK PDRSGPVGLGLE+L+Q L QDD +
Sbjct:    1 MNGRDTVDCGRRTVVATLTRALLRSWEGSTTVGRELFDQSVLKTPDRSGPVGLGLEVLLQCLVQDDGD 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8245.16444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPL7_9PHAE4.860e-2548.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLH9_ECTSI1.100e-2275.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8245contigS-dermatodea_contig8245:5952..8566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-17_001120.1
Hectar predicted targeting categoryother localisation
Exons4
Model size844
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8245.16444.1prot_S-dermatodea_contig8245.16444.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8245 6995..8566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.2846117-UTR-S-dermatodea_contig8245:5951..63921622925331.2846117-UTR-S-dermatodea_contig8245:5951..6392Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8245 5952..6392 +
1694079860.591829-UTR-S-dermatodea_contig8245:5951..63921694079860.591829-UTR-S-dermatodea_contig8245:5951..6392Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8245 5952..6392 +
1622925331.294246-UTR-S-dermatodea_contig8245:6946..69941622925331.294246-UTR-S-dermatodea_contig8245:6946..6994Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8245 6947..6994 +
1694079860.6099458-UTR-S-dermatodea_contig8245:6946..69941694079860.6099458-UTR-S-dermatodea_contig8245:6946..6994Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8245 6947..6994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.3058765-CDS-S-dermatodea_contig8245:6994..70901622925331.3058765-CDS-S-dermatodea_contig8245:6994..7090Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8245 6995..7090 +
1694079860.6203496-CDS-S-dermatodea_contig8245:6994..70901694079860.6203496-CDS-S-dermatodea_contig8245:6994..7090Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8245 6995..7090 +
1622925331.318071-CDS-S-dermatodea_contig8245:7544..76701622925331.318071-CDS-S-dermatodea_contig8245:7544..7670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8245 7545..7670 +
1694079860.6355274-CDS-S-dermatodea_contig8245:7544..76701694079860.6355274-CDS-S-dermatodea_contig8245:7544..7670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8245 7545..7670 +
1622925331.328992-CDS-S-dermatodea_contig8245:8434..85661622925331.328992-CDS-S-dermatodea_contig8245:8434..8566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8245 8435..8566 +
1694079860.6467638-CDS-S-dermatodea_contig8245:8434..85661694079860.6467638-CDS-S-dermatodea_contig8245:8434..8566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8245 8435..8566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8245.16444.1

>prot_S-dermatodea_contig8245.16444.1 ID=prot_S-dermatodea_contig8245.16444.1|Name=mRNA_S-dermatodea_contig8245.16444.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MNGTDALECGRRTVVATLTRALLGSWDGSVHMGRQLFDQSVLKNPDRSGP
VGLGLEMLVQSLAQDDANCAVEDEGTTTGLEEGSSASESEGDHPNRRRCS
RALSPGQGASSLSPPDEV
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mRNA from alignment at S-dermatodea_contig8245:5952..8566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8245.16444.1 ID=mRNA_S-dermatodea_contig8245.16444.1|Name=mRNA_S-dermatodea_contig8245.16444.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2615bp|location=Sequence derived from alignment at S-dermatodea_contig8245:5952..8566+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGAGGCACGAACAGTATTATGTGCGATTGATTGCACATCAGTAATTATG
AGATACCTTGGAAGGTTCCCAATATGCTCCAATCCTTCTCCATGTTGCCT
TCTCCATGTTGATCGCCAATCAGAGACTAGGCTCATGGACGAACCTGCAC
CCACTGCAGAAATCTCCAAGGAGAACTTTTGCGAATATTTTCAATATTTG
CAGCCCCCCCGTTCGATTGTATTGCGAATAAAGTTATCGTTTAGCAACGT
GTCCGATAGTCTTATGTACCGTGTGTAAACCACAGGACCTCGAGGAGTAC
GTTCTGCCAGCAAGTATTTACCGCGCCATTGCATCAGCCGAGGAACCTCG
GCCACCCGCCCCTCGAGGACACGAGTGGAAGCGTAGGAAGGAGCGGGCAC
TGGCCGGGGCTGGTAAGACTGCGGCCGCCTCGTCCTCACAGGTATGCACA
CAACCGGTAGATGCTCACGAGACATTCAGTTCGTACAGAGATGGCTTGCT
GACCTTTTCATCTGACCATTTGATGAGGTGCAGACGCTTTGTTTAAGGTC
GGAATTAAGACACGGGGCTAGTTCTCCCTCAAAACCGCAGGTGGAAGAGT
ATAGCTGTTCTCCCTGGATCATGTTCATACGCGCGGAAGAAAGGTGCTGT
TTGAACTTTTGCATGACGAGAGAAAGTTCCAAGTGCGGGGTTGTCTGCTT
GTAGGCCATCAACTACCAGCGCCGTGCGATGTGGCCATCACAACATACTA
CAATAACTCCCACGTCCAGTTTACGGAAACGGTAACGTAGCACAATTAAT
AAGAAGAGGTTTCGGGCGCCTCGGCCTTTGAGCCAGGCGAATGCGAGTGC
AAGCGAGAGGGATTTGCGAGGTAGGACGAAATGCTCGTTCAAGTCACCCA
AACAGGAGATCACCGATCCATTTTTACTTTGTGTGCTTACTCGCCTTGAG
CAGTCCCGTCCCGTCCCGCCATTTTATCGTTTTTTGCCCCTCCAGGGAGC
GTCCACAATCACCGGGCTGCAGACCTTACGGGAATACTTGTGCATGAACG
GCACGGATGCCTTAGAATGCGGCAGGCGCACGGTCGTCGCCACACTCACA
AGAGCCCTGCTCGGCTCATGGGATGGGTCCGTTCACATGGTACGAATTAA
CGTATTTCGATAATATTTTTCTAGTAACGGATAAACAGCGTCTGGCCCGT
GCTTGCCGTCCAGCATGAGTTGTCGCTAGCCATGCTTACTAAGTCATCAT
TGTTTTGCTCGGGATTTCAGCCCAAACCAGGAAAACAAGCCCAACACAAG
AAATGTTCACACAACAATCGACAACGGCTGACAAGTGTATCTGGCTGCAG
CGGCCGTGGCAAAAACACTTGAATTCTTGCACAGGGCATTCCACCCGCTC
TATCCCACGGAAGATCAAGCTATCCCACCCTCAACCCCCCGGCCAATACT
CGAACATGTGTTACAAGGATTACGGTTTCGTGCCTCTACCCGTGTGACGT
GATTGCAACTGTGTGATCGTGACCCACGCGGCGCTAGATAGGAACATCCG
CGAGCGTTGCTATCGTTCGCTCGCCTCCATGCGCCGCCCCCAGGGAAGAC
AGTTGTTCGACCAAAGCGTCCTCAAGAATCCGGATCGCTCTGGTCCTGTG
GGTCTTGGATTGGAAATGCTCGTGCAATCTCTCGCTCAGGACGACGCCAA
CTGTGCAGTAGAGGATGAGGTGAACGGGGCGTGGACAAGCCGTCTGCAAC
GTGTGACTGTGCGAGAGCGAAGTTGCAGCAAGAAGCGCAAGCCATAACTT
CTCCACATTCGCGAGTATCAAAGAATGGGCTTCGTGTTGCAGCAAATTAG
CACAACCGGCGCGGCCTATTCTCTGCGATACACGTGTTTCAAGTCTTCCT
TGCCCCCGCCGTCATAGTGAATCCCTCCTTGGTGATTAACTCCTTCGACC
GTGGTATCAGGTCGCACCGTCGCATGTGATGCATACCGTGCTTTCCAATA
TTCCACGCGATAGCAATAATGTTGCTGTCGTATCGGCAAGGCCACCCTTT
CCCCCCATGAAACGAGTGACATCTATACTACGTGAACAAGGCCCGCACCG
GCTGGCTTGTCTACATACCAACGACAACGTGTTTTCGAGTGGCTTAAGTG
CACTGAACGCATTCCCTTCTCCCGTAGGAGCTCTAATTGTGGATAAGACG
CCAATGGTCAACCGTTGAGACGTTTCTCTCCGCATTCACGCCCACGCAAA
AGGGACCAACGTGCCCTTGCCGCCACCCTAGAACCACAAAATATTGCTAT
TTGCTTCTCTTCCTACATTGTATCGCTAATCACAAAAAAAACGGCCCGTT
GTGTCATACATTACTGTGACGAAGCTTTCTCCTCCTCGCCCCCCCCTGGG
CACATGCCATCACCACGCTGCCACGTAGTACACTGCCGCATAGACAAACC
TGAGCAGTGTGCGTAACGCTTAATATATTGTAGGGCACCACCACAGGACT
TGAGGAAGGTTCTTCGGCTTCCGAGAGCGAGGGTGACCACCCCAACCGTC
GCCGTTGCAGCCGCGCCCTCTCCCCTGGTCAAGGCGCTTCGTCTCTCTCT
CCGCCAGACGAGGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8245:5952..8566+

>mRNA_S-dermatodea_contig8245.16444.1 ID=mRNA_S-dermatodea_contig8245.16444.1|Name=mRNA_S-dermatodea_contig8245.16444.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig8245:5952..8566+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACGGCACGGATGCCTTAGAATGCGGCAGGCGCACGGTCGTCGCCAC
ACTCACAAGAGCCCTGCTCGGCTCATGGGATGGGTCCGTTCACATGATGA
ACGGCACGGATGCCTTAGAATGCGGCAGGCGCACGGTCGTCGCCACACTC
ACAAGAGCCCTGCTCGGCTCATGGGATGGGTCCGTTCACATGGGAAGACA
GTTGTTCGACCAAAGCGTCCTCAAGAATCCGGATCGCTCTGGTCCTGTGG
GTCTTGGATTGGAAATGCTCGTGCAATCTCTCGCTCAGGACGACGCCAAC
TGTGCAGTAGAGGATGAGGGAAGACAGTTGTTCGACCAAAGCGTCCTCAA
GAATCCGGATCGCTCTGGTCCTGTGGGTCTTGGATTGGAAATGCTCGTGC
AATCTCTCGCTCAGGACGACGCCAACTGTGCAGTAGAGGATGAGGGCACC
ACCACAGGACTTGAGGAAGGTTCTTCGGCTTCCGAGAGCGAGGGTGACCA
CCCCAACCGTCGCCGTTGCAGCCGCGCCCTCTCCCCTGGTCAAGGCGCTT
CGTCTCTCTCTCCGCCAGACGAGGTCGGCACCACCACAGGACTTGAGGAA
GGTTCTTCGGCTTCCGAGAGCGAGGGTGACCACCCCAACCGTCGCCGTTG
CAGCCGCGCCCTCTCCCCTGGTCAAGGCGCTTCGTCTCTCTCTCCGCCAG
ACGAGGTC
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