mRNA_S-dermatodea_contig8244.16443.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8244.16443.1
Unique NamemRNA_S-dermatodea_contig8244.16443.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: E0VU36_PEDHC (zinc_ribbon_16 domain-containing protein n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VU36_PEDHC)

HSP 1 Score: 75.5 bits (184), Expect = 5.060e-14
Identity = 30/46 (65.22%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   22 TTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRSLDS 159
            + +  WF WC  CRHGGHA HIN WFE H EC V GC CKC SLDS
Sbjct:  784 SNLASWFTWCQSCRHGGHAGHINNWFEKHSECPVTGCCCKCFSLDS 829
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: A0A1J1I1K9_9DIPT (CLUMA_CG007622, isoform A (Fragment) n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1I1K9_9DIPT)

HSP 1 Score: 72.8 bits (177), Expect = 4.490e-13
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   19 STTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRSLDSPVL 168
            S    KWF WC  CRHGGH  H+  WF+TH EC V  C CKC ++D P+L
Sbjct:  788 SKPFQKWFSWCQTCRHGGHTEHLAEWFKTHTECPVTCCNCKCFAIDLPLL 837
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: A0A1W0WR72_HYPDU (WD repeat-containing protein mio n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WR72_HYPDU)

HSP 1 Score: 72.0 bits (175), Expect = 8.390e-13
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   28 VDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRSLDS 159
            ++KWF WC  CRHGGHA H+  WF  H EC V GC CKC  ++S
Sbjct:  823 IEKWFTWCQSCRHGGHASHLAEWFREHSECAVTGCSCKCMMIES 866
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: A0A7S3TXM9_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TXM9_EMIHU)

HSP 1 Score: 67.0 bits (162), Expect = 4.880e-12
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   16 PSTTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRSLDSPVL 168
            PS+ + +W  WC  CRHGGHA H+  WF  H  C V GC C+C  LD+ +L
Sbjct:   95 PSSGLGRWMVWCQSCRHGGHALHVEQWFARHTVCPVAGCDCQCALLDAGML 145
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: K0STE1_THAOC (zinc_ribbon_16 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STE1_THAOC)

HSP 1 Score: 67.0 bits (162), Expect = 9.330e-12
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   19 STTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRS 150
            S     W+ WC  C+HGGHAHH+N WFE H  C V GC C+C++
Sbjct:   79 SVPFSDWWSWCLKCKHGGHAHHLNSWFEKHSTCPVSGCDCRCQA 122
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: B3RQZ2_TRIAD (zinc_ribbon_16 domain-containing protein (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RQZ2_TRIAD)

HSP 1 Score: 67.4 bits (163), Expect = 2.920e-11
Identity = 24/48 (50.00%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   16 PSTTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRSLDS 159
            P    + WF WC  CRHGGHA H+  WF  H+EC V+ C C C + DS
Sbjct:  294 PKKRFNSWFSWCQSCRHGGHATHMESWFANHNECPVQDCNCSCSARDS 341
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: A0A369S889_9METZ (WD repeat-containing protein mio-B n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369S889_9METZ)

HSP 1 Score: 67.4 bits (163), Expect = 3.400e-11
Identity = 24/48 (50.00%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   16 PSTTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRSLDS 159
            P    + WF WC  CRHGGHA H+  WF  H+EC V+ C C C + DS
Sbjct:  412 PKKRFNSWFSWCQSCRHGGHATHMESWFANHNECPVQDCNCSCSARDS 459
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: R1BU66_EMIHU (zinc_ribbon_16 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BU66_EMIHU)

HSP 1 Score: 67.0 bits (162), Expect = 4.860e-11
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   16 PSTTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRSLDSPVL 168
            PS+ + +W  WC  CRHGGHA H+  WF  H  C V GC C+C  LD+ +L
Sbjct:  944 PSSGLGRWMVWCQSCRHGGHALHVEQWFARHTVCPVAGCDCQCALLDAGML 994
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: A0A1Y2BYV4_9FUNG (zinc_ribbon_16 domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BYV4_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 5.740e-10
Identity = 23/44 (52.27%), Postives = 25/44 (56.82%), Query Frame = 1 
Query:   13 PPSTTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKC 144
            P     + WF WC  CRHGGHA H+  WF  HD C V GC C C
Sbjct:  527 PELQGFEGWFTWCQTCRHGGHAKHVQEWFRAHDGCPVAGCDCSC 570
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BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Match: A0A167LHG5_PHYB8 (zinc_ribbon_16 domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167LHG5_PHYB8)

HSP 1 Score: 60.5 bits (145), Expect = 9.800e-9
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 1 
Query:   31 DKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCR 147
            D WF WC  CRHGGHA H+  WF+ H  C V  C C+C+
Sbjct: 1019 DLWFTWCQTCRHGGHAVHMEDWFQKHSTCPVSNCICQCK 1057
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8244.16443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
E0VU36_PEDHC5.060e-1465.22zinc_ribbon_16 domain-containing protein n=1 Tax=P... [more]
A0A1J1I1K9_9DIPT4.490e-1354.00CLUMA_CG007622, isoform A (Fragment) n=1 Tax=Cluni... [more]
A0A1W0WR72_HYPDU8.390e-1356.82WD repeat-containing protein mio n=1 Tax=Hypsibius... [more]
A0A7S3TXM9_EMIHU4.880e-1249.02Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
K0STE1_THAOC9.330e-1252.27zinc_ribbon_16 domain-containing protein n=1 Tax=T... [more]
B3RQZ2_TRIAD2.920e-1150.00zinc_ribbon_16 domain-containing protein (Fragment... [more]
A0A369S889_9METZ3.400e-1150.00WD repeat-containing protein mio-B n=1 Tax=Trichop... [more]
R1BU66_EMIHU4.860e-1149.02zinc_ribbon_16 domain-containing protein n=1 Tax=E... [more]
A0A1Y2BYV4_9FUNG5.740e-1052.27zinc_ribbon_16 domain-containing protein n=1 Tax=R... [more]
A0A167LHG5_PHYB89.800e-953.85zinc_ribbon_16 domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8244contigS-dermatodea_contig8244:7725..9150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score75.9
Seed ortholog evalue7.8e-12
Seed eggNOG ortholog121225.PHUM444950-PA
Preferred namemio
KEGG koko:K20407
KEGG Pathwayko04150,map04150
GOsGO:0000003,GO:0000323,GO:0001674,GO:0001709,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005767,GO:0005773,GO:0005776,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008150,GO:0008152,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010506,GO:0010507,GO:0010564,GO:0010646,GO:0010647,GO:0016043,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030154,GO:0030716,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032008,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0034641,GO:0035859,GO:0040020,GO:0042594,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044754,GO:0045165,GO:0045793,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0061700,GO:0065007,GO:0065008,GO:0071496,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:1901360,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928,GO:2000241
EggNOG free text desc.Zinc-ribbon like family
EggNOG OGs38BEP@33154,3BBBG@33208,3D36K@33213,3E9H4@33342,3SIF3@50557,41XJ0@6656,KOG1008@1,KOG1008@2759
COG Functional cat.S
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_002770.1
Exons2
Model size259
Cds size192
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8244.16443.1prot_S-dermatodea_contig8244.16443.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8244 7791..9150 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.230348-UTR-S-dermatodea_contig8244:7724..77901622925331.230348-UTR-S-dermatodea_contig8244:7724..7790Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8244 7725..7790 -
1694079860.5403879-UTR-S-dermatodea_contig8244:7724..77901694079860.5403879-UTR-S-dermatodea_contig8244:7724..7790Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8244 7725..7790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.2426775-CDS-S-dermatodea_contig8244:7790..79261622925331.2426775-CDS-S-dermatodea_contig8244:7790..7926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8244 7791..7926 -
1694079860.559492-CDS-S-dermatodea_contig8244:7790..79261694079860.559492-CDS-S-dermatodea_contig8244:7790..7926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8244 7791..7926 -
1622925331.2529254-CDS-S-dermatodea_contig8244:9094..91501622925331.2529254-CDS-S-dermatodea_contig8244:9094..9150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8244 9095..9150 -
1694079860.5738685-CDS-S-dermatodea_contig8244:9094..91501694079860.5738685-CDS-S-dermatodea_contig8244:9094..9150Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8244 9095..9150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8244.16443.1

>prot_S-dermatodea_contig8244.16443.1 ID=prot_S-dermatodea_contig8244.16443.1|Name=mRNA_S-dermatodea_contig8244.16443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
ERKQPPSTTVDKWFRWCNLCRHGGHAHHINLWFETHDECGVKGCRCKCRS
LDSPVLPPCLSMR*
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mRNA from alignment at S-dermatodea_contig8244:7725..9150-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8244.16443.1 ID=mRNA_S-dermatodea_contig8244.16443.1|Name=mRNA_S-dermatodea_contig8244.16443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1426bp|location=Sequence derived from alignment at S-dermatodea_contig8244:7725..9150- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCGGAAGCAGCCCCCGTCCACGACGGTGGACAAGTGGTTCCGCTGGTG
CAATTTGTGAGTGCTGGGATACCAAGTACTCGTCGTGCGTGTGTGCGTCT
GTTCCTGTGCGTATGCTTGTGGGTGTGTGTAATTTCCGTTTGTTTTGTTT
ATGTTTTTGTCTTGCCTGTAGAGCACTAAAAAGGGTACCCCCGCCCCCCC
CCTCCTACAAAATTCAAGAATTCAAAGGCATAGAGCGAGCTTTGGGGTCC
CACCTTTTAAAGAGGAAAGCTGGTGCAAGCCACACCCATGGATGCTTACG
TGTTGCTTGTGATGCTATGGTTTAATGTTATACATGAATTTGTATGGTTA
GTACCCCCCCCCCGGTATGTTCAATCGACCCACAAGCCCCTCCAACGATT
AAATTTTCGGAAACACTGTCAATGTGGCCTTCTAAACAACTATTAGTACA
TACAGCTCCCGCTGAAACAACATATATTTTCTAAACCATTGAGTGAGCGT
TGGGATCGAAGGGAATTTGGTACAAGGAAATTTTTTGATCCAAGCTAAAC
CTATGAAGGCAGGCTTACGTCACCTATGATATGATGCTATGGTTTACTTT
ACAACCCTCCCCCTCCCCCTCCCCCTTTGGCGAAGTAGGAAGAAAAAAAC
GATTGTCCATCGGCGATCGAACCTATGGGAGCAATGTCTGAGTATTACGA
AGACGGGGGGGTAATAAAATCAGCTCTTCTCTGCGCGCAGGGGTTAGGAA
GCGTTGTTTCATTTCGATCGGCTCGCGCCTGATATGGTCAGCCCATCTCA
GATCCAGTTCAGAGTTATATATACCAGAACCAACCACTATGTTCCGGATT
GCAACATTATTTTTTTGACTGGCCGGCAGACAACGCCGCCCCCCCCCCTA
TTTTTTGTGACTGGCCGAGGACGCGTGGTCAAGTGGCCTAACAGCTATGG
CATGCAAAACTTGAGTACGCTCCAATAAAGGTTTCAGAAGCATAGAGCGA
GCGTTGGGGTCCCACCTTTTCAAGAGGGAAGATGGTCCAAGCTACGCCTA
TGGAGGCTCACTTGTTACATATGATGCTATGGCGTCTTATCATGTATGAT
GTTATATGGTAATGGCATTATACAGGAAATGAGTCTTTGTCCTGAGGGAT
ATCCTGGTGATGTATCTTTGCTGCGTTTTTATGAGCTAATTATATGTGAT
GGCTTGTGTGTCGCGTTCCTCCAGGTGCCGACATGGCGGGCACGCGCACC
ACATCAACCTCTGGTTCGAGACCCATGATGAGTGCGGGGTGAAGGGATGT
CGCTGCAAGTGTCGCTCTCTAGATTCTCCGGTGCTACCACCTTGCTTATC
GATGCGTTGAGAGAAAGAGAGATAGAGAGAGCGTGTGTGTTTGCGTGTGT
GTTTTATTTGTAAATCTTATCTCTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8244:7725..9150-

>mRNA_S-dermatodea_contig8244.16443.1 ID=mRNA_S-dermatodea_contig8244.16443.1|Name=mRNA_S-dermatodea_contig8244.16443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig8244:7725..9150- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCGGAAGCAGCCCCCGTCCACGACGGTGGACAAGTGGTTCCGCTGGTG
CAATTTGAGCGGAAGCAGCCCCCGTCCACGACGGTGGACAAGTGGTTCCG
CTGGTGCAATTTGTGCCGACATGGCGGGCACGCGCACCACATCAACCTCT
GGTTCGAGACCCATGATGAGTGCGGGGTGAAGGGATGTCGCTGCAAGTGT
CGCTCTCTAGATTCTCCGGTGCTACCACCTTGCTTATCGATGCGTTGAGT
GCCGACATGGCGGGCACGCGCACCACATCAACCTCTGGTTCGAGACCCAT
GATGAGTGCGGGGTGAAGGGATGTCGCTGCAAGTGTCGCTCTCTAGATTC
TCCGGTGCTACCACCTTGCTTATCGATGCGTTGA
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