mRNA_S-dermatodea_contig8242.16441.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8242.16441.1
Unique NamemRNA_S-dermatodea_contig8242.16441.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: D7FLW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW3_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 4.740e-63
Identity = 95/112 (84.82%), Postives = 106/112 (94.64%), Query Frame = 1
Query:    1 VGQAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVEG 336
            + +AVVFLDRD+FKSTWLGNKSIYRTRMA+ADGGEL+VMAPGV KFGEDP ID+LIRR+GYRTTPEIM+FLK+ LEL+ SLSA AHLIHGSSEGRFTITYCPGGLTRE+VEG
Sbjct:  109 IQKAVVFLDRDEFKSTWLGNKSIYRTRMAMADGGELIVMAPGVAKFGEDPDIDALIRRYGYRTTPEIMEFLKKALELQKSLSAAAHLIHGSSEGRFTITYCPGGLTREDVEG 220          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: A0A6H5J4J3_9PHAE (Lar_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4J3_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.720e-61
Identity = 95/112 (84.82%), Postives = 106/112 (94.64%), Query Frame = 1
Query:    1 VGQAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVEG 336
            + +AVVFLDRD+FKSTWLGNKSIYRTRMA+ADGGEL+VMAPGV KFGEDP ID+LIRR+GYRTTPEIM+FLK+ LEL+ SLSA AHLIHGSSEGRFTITYCPGGLTRE+VEG
Sbjct:  263 IQKAVVFLDRDEFKSTWLGNKSIYRTRMAMADGGELIVMAPGVAKFGEDPDIDALIRRYGYRTTPEIMEFLKKALELQKSLSAAAHLIHGSSEGRFTITYCPGGLTREDVEG 374          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: A0A3C0QUS3_9BACT (D-mannonate epimerase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3C0QUS3_9BACT)

HSP 1 Score: 172 bits (435), Expect = 1.070e-49
Identity = 77/109 (70.64%), Postives = 96/109 (88.07%), Query Frame = 1
Query:    7 QAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVE 333
            + VV+LD D+FKSTWLGNKSIYRTRMAIADGGEL+V+APG+ +FGED  IDSLIR++GYRTTPE++ + +E  +L+N+LSA AHLIHGSSE RF+ITYCPG LT+ E+E
Sbjct:  263 KVVVYLDSDEFKSTWLGNKSIYRTRMAIADGGELIVLAPGLKEFGEDKQIDSLIRKYGYRTTPEVLQYTRENADLQNNLSAAAHLIHGSSENRFSITYCPGCLTQREIE 371          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: S0DFM1_9ZZZZ (Lar_N domain-containing protein n=1 Tax=termite gut metagenome TaxID=433724 RepID=S0DFM1_9ZZZZ)

HSP 1 Score: 172 bits (435), Expect = 1.350e-49
Identity = 79/114 (69.30%), Postives = 97/114 (85.09%), Query Frame = 1
Query:    7 QAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVEGGEME 348
            + VV+LD ++F+STWLGNKSIYRTRMAIADGGEL+VMAPG+ +FGEDPAID LIR++GYRTTPE+M F++E  +LR +LS  AHLIHG+SEGRF I Y PG L+REE+EG   E
Sbjct:  274 KVVVWLDPEEFRSTWLGNKSIYRTRMAIADGGELIVMAPGLRQFGEDPAIDRLIRKYGYRTTPEVMRFVEENADLRENLSVAAHLIHGTSEGRFRIVYAPGHLSREEIEGVGFE 387          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: A0A7X6SE71_9BACT (DUF2088 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7X6SE71_9BACT)

HSP 1 Score: 171 bits (434), Expect = 1.500e-49
Identity = 77/109 (70.64%), Postives = 95/109 (87.16%), Query Frame = 1
Query:    7 QAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVE 333
            + VV+LD  +FKSTWLGNKSIYRTRMAIAD GEL+V+APG+ +FGEDP ID LIR++GYRTTPE+M F+KE  +L+N+LSA AHLIHGSSE RFT+ YCPG ++REE+E
Sbjct:  263 KVVVYLDPQEFKSTWLGNKSIYRTRMAIADDGELIVLAPGLREFGEDPEIDRLIRKYGYRTTPEVMQFVKENSDLQNNLSAAAHLIHGSSENRFTVIYCPGYISREEIE 371          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: A0A7C4BYA3_9BACT (DUF2088 domain-containing protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7C4BYA3_9BACT)

HSP 1 Score: 171 bits (432), Expect = 3.040e-49
Identity = 78/115 (67.83%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 VGQAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVEGGEM 345
            + +AVV+LD  +FKSTWLGNKS+YRTRMA+ADGGEL+V+APGV +FGEDP ID LIR++GY  TP ++  +KE  +L  +LSA AHLIHGSSEGRFTITYCPGGL+REEVE    
Sbjct:  262 IRKAVVYLDPGEFKSTWLGNKSVYRTRMALADGGELIVLAPGVKEFGEDPTIDKLIRKYGYVGTPAVLQAVKENEDLAGNLSAAAHLIHGSSEGRFTITYCPGGLSREEVEAANF 376          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: A0A836RU81_9BACT (DUF2088 domain-containing protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A836RU81_9BACT)

HSP 1 Score: 171 bits (432), Expect = 3.040e-49
Identity = 77/112 (68.75%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 VGQAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVEG 336
            +G+ VV+LD ++FKS+WLGNKSIYRTRMAIADGGEL+++AP + +FGED  ID LIR++GY TTPEI+   +E  +L+N+LSA AHLIHGSSEGRFTITYCPG L+REE+EG
Sbjct:  261 LGKVVVYLDPEEFKSSWLGNKSIYRTRMAIADGGELIILAPALKEFGEDAEIDRLIRKYGYLTTPEILRLTRENADLQNNLSAAAHLIHGSSEGRFTITYCPGRLSREEIEG 372          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: A0A1G0VMA5_9BACT (D-mannonate epimerase (Fragment) n=1 Tax=Ignavibacteria bacterium RIFOXYA2_FULL_37_17 TaxID=1798443 RepID=A0A1G0VMA5_9BACT)

HSP 1 Score: 167 bits (423), Expect = 3.540e-49
Identity = 74/111 (66.67%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 VGQAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVE 333
            + + +V+LD  ++KSTWLGNKS+YRTRMAIADGGEL+V+APG+ +FGED  ID LIR++GY TTPE++ F+ E  +L+N+LSA AHLIHGSSE RFTITYCPG LT+EE+E
Sbjct:  138 LNKVIVYLDPSEYKSTWLGNKSVYRTRMAIADGGELIVLAPGLKEFGEDKTIDGLIRKYGYVTTPEVLKFVDENEDLKNNLSAAAHLIHGSSENRFTITYCPGYLTKEEIE 248          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: A0A5C6C9G6_9BACT (Lar_N domain-containing protein n=1 Tax=Bythopirellula polymerisocia TaxID=2528003 RepID=A0A5C6C9G6_9BACT)

HSP 1 Score: 170 bits (430), Expect = 5.660e-49
Identity = 77/110 (70.00%), Postives = 94/110 (85.45%), Query Frame = 1
Query:    7 QAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVEG 336
            + VV+LD D+F STWLGNK+IYRTRMAIADGGEL+V+AP V  FGEDP ID LIR++GYRTTPE++ F++   +LR +LSA AHLIHGSSEGRF +TYCPG L+REE+EG
Sbjct:  263 KVVVYLDPDEFHSTWLGNKAIYRTRMAIADGGELIVLAPSVRTFGEDPQIDLLIRKYGYRTTPEVLKFVEANEDLRENLSAAAHLIHGSSEGRFKVTYCPGELSREEIEG 372          
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Match: A0A7V9G5U0_9BACT (DUF2088 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V9G5U0_9BACT)

HSP 1 Score: 170 bits (430), Expect = 6.030e-49
Identity = 78/110 (70.91%), Postives = 94/110 (85.45%), Query Frame = 1
Query:    7 QAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDPAIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITYCPGGLTREEVEG 336
            + VV+LD ++F +TWLGNKS+YRTRMAIAD GELVV+APG+  FGEDP ID LIR +GYRTTPE+M F++E  +LR +LSA AHLIHGSSEGRFT+TYCPG LTR E+EG
Sbjct:  264 KVVVYLDPEEFHTTWLGNKSVYRTRMAIADRGELVVLAPGLKGFGEDPEIDRLIRAYGYRTTPEVMRFVREHQDLRTNLSAAAHLIHGSSEGRFTVTYCPGHLTRAEIEG 373          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8242.16441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLW3_ECTSI4.740e-6384.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J4J3_9PHAE2.720e-6184.82Lar_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A3C0QUS3_9BACT1.070e-4970.64D-mannonate epimerase n=1 Tax=Bacteroidales bacter... [more]
S0DFM1_9ZZZZ1.350e-4969.30Lar_N domain-containing protein n=1 Tax=termite gu... [more]
A0A7X6SE71_9BACT1.500e-4970.64DUF2088 domain-containing protein n=1 Tax=Candidat... [more]
A0A7C4BYA3_9BACT3.040e-4967.83DUF2088 domain-containing protein n=1 Tax=Bryobact... [more]
A0A836RU81_9BACT3.040e-4968.75DUF2088 domain-containing protein n=1 Tax=Calditri... [more]
A0A1G0VMA5_9BACT3.540e-4966.67D-mannonate epimerase (Fragment) n=1 Tax=Ignavibac... [more]
A0A5C6C9G6_9BACT5.660e-4970.00Lar_N domain-containing protein n=1 Tax=Bythopirel... [more]
A0A7V9G5U0_9BACT6.030e-4970.91DUF2088 domain-containing protein n=1 Tax=Planctom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8242contigS-dermatodea_contig8242:2451..3372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue1e-49
Seed eggNOG ortholog2880.D7FLW3
EggNOG free text desc.lactate racemase activity
EggNOG OGs2QWF9@2759,COG3875@1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001460.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.1445763-CDS-S-dermatodea_contig8242:2450..26241622925331.1445763-CDS-S-dermatodea_contig8242:2450..2624Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8242 2451..2624 +
1694079860.4979758-CDS-S-dermatodea_contig8242:2450..26241694079860.4979758-CDS-S-dermatodea_contig8242:2450..2624Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8242 2451..2624 +
1622925331.153635-CDS-S-dermatodea_contig8242:3195..33721622925331.153635-CDS-S-dermatodea_contig8242:3195..3372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8242 3196..3372 +
1694079860.5118303-CDS-S-dermatodea_contig8242:3195..33721694079860.5118303-CDS-S-dermatodea_contig8242:3195..3372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8242 3196..3372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8242.16441.1prot_S-dermatodea_contig8242.16441.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8242 2451..3372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8242.16441.1

>prot_S-dermatodea_contig8242.16441.1 ID=prot_S-dermatodea_contig8242.16441.1|Name=mRNA_S-dermatodea_contig8242.16441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
VGQAVVFLDRDDFKSTWLGNKSIYRTRMAIADGGELVVMAPGVTKFGEDP
AIDSLIRRFGYRTTPEIMDFLKETLELRNSLSAVAHLIHGSSEGRFTITY
CPGGLTREEVEGGEME*
back to top

mRNA from alignment at S-dermatodea_contig8242:2451..3372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8242.16441.1 ID=mRNA_S-dermatodea_contig8242.16441.1|Name=mRNA_S-dermatodea_contig8242.16441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=922bp|location=Sequence derived from alignment at S-dermatodea_contig8242:2451..3372+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGGACAGGCGGTGGTGTTTTTGGATCGTGATGATTTCAAGTCCACGTG GCTGGGCAACAAGAGCATATACCGCACGAGAATGGCAATCGCGGACGGTG GCGAGCTGGTCGTCATGGCGCCGGGGGTGACAAAATTCGGCGAAGACCCC GCGATCGACTCCCTCATTCGGCGGGTGTGTGTGTGTGGTTCGTGCTTCTC TTGGAGTAACGGAACAAACGAACTAACCCTAGCCATTTGTCTTATTTTTC CTTTTGTTGGCGCCCTTCTCGTTGCGGGTATCTGCTGGTAGGTAACCTGT GCCGTATTGAAATTAAGCGGTAATGAAGCGGTATGGGGTAGTCTGTTGGA ATATTTTTCGAGTACTCAGACTCCTGTGCTCACCGTTGAACCAGGCGTGA TCATGCGTACTCAGTAACTGTTGTAGGTGGGACATAGGTTTTGTGTCTGT GTGCTATACCTTATGAGGCCTGAAGTTGTAGGCACACGCTTTCAGGCTTT TACGCCAGGCAACGGAGGAGAACTGCTCTTGTGCATGTTCCTCGCGAAGG GTACTTGCATCTCTGCCGAATAAGCGATGGATTTTTGGAAGTTTTGCAGA GCCGCAACCCAGCCGTATACGGTATTCTGGAACCGTACCCTTTACAACAA GCACTTGCTCCAGGCGAGGATCAAGTACGCGTCAGCAGGCTCTCGGGAAC GCTTAACTCAAATCGTGACGCTGCATTTTTCTGTACTCGTCGCAGTTTGG TTATCGCACGACCCCAGAAATCATGGATTTCCTCAAGGAGACCCTCGAGC TTCGGAACAGCCTAAGCGCTGTGGCCCACCTTATCCACGGCTCGTCGGAA GGACGTTTTACGATAACCTACTGCCCGGGAGGGCTGACTCGCGAAGAAGT TGAAGGAGGTGAGATGGAGTAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8242:2451..3372+

>mRNA_S-dermatodea_contig8242.16441.1 ID=mRNA_S-dermatodea_contig8242.16441.1|Name=mRNA_S-dermatodea_contig8242.16441.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig8242:2451..3372+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGGACAGGCGGTGGTGTTTTTGGATCGTGATGATTTCAAGTCCACGTG
GCTGGGCAACAAGAGCATATACCGCACGAGAATGGCAATCGCGGACGGTG
GCGAGCTGGTCGTCATGGCGCCGGGGGTGACAAAATTCGGCGAAGACCCC
GCGATCGACTCCCTCATTCGGCGGGTTGGACAGGCGGTGGTGTTTTTGGA
TCGTGATGATTTCAAGTCCACGTGGCTGGGCAACAAGAGCATATACCGCA
CGAGAATGGCAATCGCGGACGGTGGCGAGCTGGTCGTCATGGCGCCGGGG
GTGACAAAATTCGGCGAAGACCCCGCGATCGACTCCCTCATTCGGCGGTT
TGGTTATCGCACGACCCCAGAAATCATGGATTTCCTCAAGGAGACCCTCG
AGCTTCGGAACAGCCTAAGCGCTGTGGCCCACCTTATCCACGGCTCGTCG
GAAGGACGTTTTACGATAACCTACTGCCCGGGAGGGCTGACTCGCGAAGA
AGTTGAAGGAGGTGAGATGGAGTAATTTGGTTATCGCACGACCCCAGAAA
TCATGGATTTCCTCAAGGAGACCCTCGAGCTTCGGAACAGCCTAAGCGCT
GTGGCCCACCTTATCCACGGCTCGTCGGAAGGACGTTTTACGATAACCTA
CTGCCCGGGAGGGCTGACTCGCGAAGAAGTTGAAGGAGGTGAGATGGAGT
AA
back to top