mRNA_S-dermatodea_contig8241.16440.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8241.16440.1
Unique NamemRNA_S-dermatodea_contig8241.16440.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8241.16440.1 vs. uniprot
Match: D7G2Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Z6_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.210e-47
Identity = 73/107 (68.22%), Postives = 91/107 (85.05%), Query Frame = 2 
Query:  110 PTKSGSDAKWLQVLEEAPDMKVGDVKVVSGKYKGDDKFFALATHGGQYFAVSEACGRCKFPMINGKVKLLGEGGEAEDIKEGEEQDPEAKIGIACPLCGALFDMRTG 430
            P+ + S+AKWLQVL+   +++ G VKVVSGKYKG+D+ F LA +GG Y+AVSEACGRCKFP+INGKVKLL  GG+AED+K G EQDPEA+I IACPLCGA+F++RTG
Sbjct:   66 PSGATSNAKWLQVLDSTSELEPGSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPLINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTG 172
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BLAST of mRNA_S-dermatodea_contig8241.16440.1 vs. uniprot
Match: A0A7S2USE0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USE0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.320e-5
Identity = 32/101 (31.68%), Postives = 43/101 (42.57%), Query Frame = 2 
Query:  137 WLQVLEEAPDM--KVGDVKVVS-GKYKGDDKFFALATHGGQYFAVSEACGRCKFPMINGKVKLLGEGGEAEDIKEGEEQDPEAKIGIACPLCGALFDMRTG 430
            W+QV E   DM  K G  K V      G      +  H G+  +    CGRC+FP+INGK+                  D + +  I CPLCG  F + +G
Sbjct:   93 WIQVFESDEDMDSKEGATKAVEITDPLGKPAPVLMIRHEGKISSTEIGCGRCQFPLINGKI-----------------MDQDGEPHIECPLCGCGFSLSSG 176
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BLAST of mRNA_S-dermatodea_contig8241.16440.1 vs. uniprot
Match: A0A2R6XU43_MARPO (Rieske_2 domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XU43_MARPO)

HSP 1 Score: 52.0 bits (123), Expect = 4.360e-5
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 2 
Query:  137 WLQVLEEAPDMKVGDVKVVSGKYKGDDKFFALATHGGQYFAVSEACGRCKFPMINGKVKLLGEGGEAEDIKEGEEQDPEAKIGIACPLCGALFDMRTG 430
            W+QV E+  D+  G  K +      D++ + L   G   + +   C  C+FPMI+GKV+L+GEG +               + I CPLC + F +  G
Sbjct:  149 WVQVAEK-DDLTEGKNKAILR----DNEGYVLVQRGSLLYTIKANCTTCQFPMIDGKVELVGEGDD---------------LTIECPLCHSKFSVVDG 226
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BLAST of mRNA_S-dermatodea_contig8241.16440.1 vs. uniprot
Match: W7TAQ7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAQ7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 9.350e-5
Identity = 37/100 (37.00%), Postives = 47/100 (47.00%), Query Frame = 2 
Query:  134 KWLQVLEEAPDMKVGDVKVVSGKYKGDDKFFALATHG-GQYFAVSEACGRCKFPMINGKVKLLGEGGEAEDIKEGEEQDPEAKIGIACPLCGALFDMRTG 430
            K L V  E  D + G  K V G  K DDKF  L     G+  A+   CGRCKFP++ GKV            ++   +D E K  I CPLC   F + +G
Sbjct:  106 KVLDVGSELADAE-GSQKAV-GPLK-DDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKVS-----------EDPSVEDDEDKGIITCPLCAVRFSLASG 191
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8241.16440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2Z6_ECTSI1.210e-4768.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2USE0_9STRA3.320e-531.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2R6XU43_MARPO4.360e-530.61Rieske_2 domain-containing protein n=1 Tax=Marchan... [more]
W7TAQ7_9STRA9.350e-537.00Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8241contigS-dermatodea_contig8241:6271..9184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size432
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8241.16440.1prot_S-dermatodea_contig8241.16440.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8241 7505..9184 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.0673738-UTR-S-dermatodea_contig8241:6270..64051622925331.0673738-UTR-S-dermatodea_contig8241:6270..6405Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8241 6271..6405 -
1694079860.444038-UTR-S-dermatodea_contig8241:6270..64051694079860.444038-UTR-S-dermatodea_contig8241:6270..6405Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8241 6271..6405 -
1622925331.0799887-UTR-S-dermatodea_contig8241:7473..75041622925331.0799887-UTR-S-dermatodea_contig8241:7473..7504Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8241 7474..7504 -
1694079860.4548073-UTR-S-dermatodea_contig8241:7473..75041694079860.4548073-UTR-S-dermatodea_contig8241:7473..7504Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8241 7474..7504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.0922115-CDS-S-dermatodea_contig8241:7504..75811622925331.0922115-CDS-S-dermatodea_contig8241:7504..7581Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 7505..7581 -
1694079860.4654715-CDS-S-dermatodea_contig8241:7504..75811694079860.4654715-CDS-S-dermatodea_contig8241:7504..7581Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 7505..7581 -
1622925331.103423-CDS-S-dermatodea_contig8241:8294..83361622925331.103423-CDS-S-dermatodea_contig8241:8294..8336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 8295..8336 -
1694079860.4761822-CDS-S-dermatodea_contig8241:8294..83361694079860.4761822-CDS-S-dermatodea_contig8241:8294..8336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 8295..8336 -
1622925331.11582-CDS-S-dermatodea_contig8241:9039..91841622925331.11582-CDS-S-dermatodea_contig8241:9039..9184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 9040..9184 -
1694079860.4867077-CDS-S-dermatodea_contig8241:9039..91841694079860.4867077-CDS-S-dermatodea_contig8241:9039..9184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 9040..9184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8241.16440.1

>prot_S-dermatodea_contig8241.16440.1 ID=prot_S-dermatodea_contig8241.16440.1|Name=mRNA_S-dermatodea_contig8241.16440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
EAVENAVAEHDGREEQAISPRYKEETGRRRFQGASRAHQVWFGCEVAAGA
GGSPRHEGWGRQGGVWKVQGGRQVFRARHARRAIFRS*
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mRNA from alignment at S-dermatodea_contig8241:6271..9184-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8241.16440.1 ID=mRNA_S-dermatodea_contig8241.16440.1|Name=mRNA_S-dermatodea_contig8241.16440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2914bp|location=Sequence derived from alignment at S-dermatodea_contig8241:6271..9184- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGCCGTCGAGAACGCCGTTGCCGAGCATGATGGCCGAGAAGAACAGGC
GATCTCGCCGCGATATAAAGAAGAGACGGGCCGCCGCCGCTTCCAAGGCG
CCTCGCGCGCCCACCAAGTCTGGTTCGGATGCGAAGTGGCTGCAGGTGGG
TTTGGCTGCCCCCTCCCTAATAAGAACGTGTTGCAAGGCGGCAGTGATGT
TGGGCTCAAGTTTGGTCAGGGGTCGAAGGCAGTCGTGACAGCCGTCTGAG
GATTTGATGCCAAGAATCTTGCACGTCGTGACCTAAACACCAGTCTTCCA
GTTTTCTTGGGTTTTCCCGATGAGTAGGGGTCATCAATCCCTTGCGACGG
CCGCCCGACTTCTATGTCCAAACCCGCCCACCCCACTGGACTTACATCAA
ATACCTTAGGCTCGATTTATATACAGTTGGAGTGGCGACAAGCGTTTTGA
GTACGTCACAAGTCTCCAAACTCGAGCCTGTTGTTTTTTCCTCGGCCCCA
GTCGATCAGCTCGATCCCATTCGCGTTTGCGGTCACAAGACTGCACGCAA
ATCGCCCAATCCCCTCCTTGTTCGCAAGCGCCTTCGATTGCTGTCGCAGC
GTGGGTTCAGCTTTTCCGCAGGATGCCGCAGTCTCGTGTTTTGCTTGCTC
ATGCTCTCGATGCTTTTTGGTGCAGATACCGCACACGGGGCCGGGTAGGG
AGAAAAATGCAGCCCAGCTGCATGTTCGACCCCAGAAAATCGTTTGTTTT
CAACTTGTTGGGATCCGCCATGCATCTTTCAGATGAATGACTTCTCCAGC
CTCCCCCGCATCGTCGTTCTCGTGACACCACGATGTGCTGGAATCCAGGT
GCTGGAGGAAGCCCCCGACATGAAGGTTGGGGACGTCAAGGTAGGCCAAA
CTTGGAGACTCGCTCCCTACCGAGTTGAGGATTGTTTTTTTGCACACATA
GTATAGACCGACTTTTTCGAGGTGCGTCTGTGGGCACAAGGGATCAACCC
ATCTCTCCCCGGTTCTCACCTTAGGTTTATGTCGCGCACTGGATTCGGCA
CTCCCGCAGCTGGCCAATTTTTCGGGTTTTGCTTACTCACGCTCTCGCGA
TTGGAGGGTGAACAATGCGCGAAATAACCCGGCAGCGCGGTTTCAAACCC
GCCGATAAGAGAGACCGGCATGTACCCGCACAAAACGCCACCGGCTAGCG
AGGTAGCCTGCTGGGAAAGACGCGGAGTAGGCACCCACCGTGGCCGCGTT
GACGTCAATCGCCCAACTGCTGTTGACACATGTGCATCGCACGGCGCTGC
GATGTCCCGACCGTCTTAGGTATTATAGTGTATGGCAGGAACGGCTAGGG
GGCACCGATTTCATCTATCACAGGGCGGTTTTCACGCTCGCTCGATACGG
TGATGCCAGAGGACGCTCGCGTCGGAGATGAAAGTTCTCTATCGGCGATG
GTTCTGTGCCCTCTTATGACACACATCTCGGCTCCTTTTCTCATCCCCAA
CGTGCATGTAAGCCGTTCGCGTCGCGATCGAGGAGACTAATCCCGATAAC
GTCCCTCGTGCCGTGTCCCACTTACCCTCCCGCGCGAACCGTCGTCCCGG
CAGGTGGTGTCTGGAAAGTACAAGGGGGACGACAAGTTTTTCGCGCTCGC
CACGCACGGAGGGCAATATTTCGCAGTTAGCGAGGCATGCGGACGCTGCA
AGTTTCCCATGGTGGGTGGACGTTTTGCCTTGGCCACCTGTGAAACTTGG
GGCCGCGAATCCCTGAGCACGAGCATGGGACCCCCCAAGACCTAATAGTA
TTGCAAGGAAACCTTTGTTGTTTTTGCTGCACGCGTCGGAGGTTTCTTGC
CATACGATTACGAGCGGGATTGAGGTCAGACGTTTTTGCTAGGGTGGCGC
ACAGTGAGAACCAAATCGATCAAATCGCATATTTTTGTCCTGCTCCACCG
CCAAACGGGGGGACAAACGTGTGTGCGGAAGGAAAATCCGACAATTTCCA
CGAGAGCTTCTTCAGCTCTGAACCTGGCGTGTGATAAACACACATTGCGT
CTACGAAGGACTTGACGGTGGATGAGACCATCAACGCTTGAGTTCGTTCC
ACAAACTCGAGAAGTGCTATAAGCGACAAGAAAAACTGATGCGTTTCGCG
CGGGCCGCCTCCACCTCTTTCGGTGTTGGATTGGAACCGAGCCGTACCCG
AGGAGGGGGGAGGGAGGGCGGGCAAAGGCTCTTGTACCATAACTATATAA
CATCATACATGATACGACACCATAGCATCGTACATAACAAGGTGGGACCC
CAACCCGTGCTCTATGCTGGTGAACTCTTAATATTTTTAGGGGGGGGGCA
CTCGGCAGCACTTTTGGCGCATTCTTTGAACATCGCGCGTCGGAGATGAA
ATTTCCCCCTCGGCGATCGTTCCGTGCCCTCTATGACACACATCCCGGCT
CCTTGATGGCAGCGCTAGTGCGTCTTTGTCTCAGGTTATACACAATGCCC
TCCACGGTGGAACGGTGCCATGTTACATGTTACTACTATTGTACACACCA
GGGCCTGTTGGATAGTGCATCTTCCTTTCTGAACATTGGGAGTACGACTG
ACGTTTGCCGTCCATGTTGCTATGGCTGTCTGCGGCCTCTGGCCACGCTC
ACGACAACGGCTGGATTTCGAAGCGAACCGATTTCTAACGCCGCCTGCCC
AGCATCGCTTGTAGAGCTATACGACGACAAGGTGTACGGTTCGCCAAGCA
TAACACACCTTGTTTTTTTCGCCCACCAGATTAACGGTAAGGTGAAACTT
CTCGGGGAAGGGGGGGAAGCGGAGGACATAAAGGAGGGGGAGGAACAGGA
CCCCGAGGCAAAAATTGGCATCGCCTGCCCTTTGTGCGGAGCGCTGTTCG
ACATGAGAACAGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8241:6271..9184-

>mRNA_S-dermatodea_contig8241.16440.1 ID=mRNA_S-dermatodea_contig8241.16440.1|Name=mRNA_S-dermatodea_contig8241.16440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig8241:6271..9184- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGCCGTCGAGAACGCCGTTGCCGAGCATGATGGCCGAGAAGAACAGGC
GATCTCGCCGCGATATAAAGAAGAGACGGGCCGCCGCCGCTTCCAAGGCG
CCTCGCGCGCCCACCAAGTCTGGTTCGGATGCGAAGTGGCTGCAGGAGGC
CGTCGAGAACGCCGTTGCCGAGCATGATGGCCGAGAAGAACAGGCGATCT
CGCCGCGATATAAAGAAGAGACGGGCCGCCGCCGCTTCCAAGGCGCCTCG
CGCGCCCACCAAGTCTGGTTCGGATGCGAAGTGGCTGCAGGTGCTGGAGG
AAGCCCCCGACATGAAGGTTGGGGACGTCAAGGTGCTGGAGGAAGCCCCC
GACATGAAGGTTGGGGACGTCAAGGTGGTGTCTGGAAAGTACAAGGGGGA
CGACAAGTTTTTCGCGCTCGCCACGCACGGAGGGCAATATTTCGCAGTTA
GGTGGTGTCTGGAAAGTACAAGGGGGACGACAAGTTTTTCGCGCTCGCCA
CGCACGGAGGGCAATATTTCGCAGTTAG
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