mRNA_S-dermatodea_contig8241.16439.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8241.16439.1
Unique NamemRNA_S-dermatodea_contig8241.16439.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8241.16439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8241contigS-dermatodea_contig8241:1698..3847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8241.16439.1prot_S-dermatodea_contig8241.16439.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8241 1704..3847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.005076-UTR-S-dermatodea_contig8241:1697..17031622925331.005076-UTR-S-dermatodea_contig8241:1697..1703Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8241 1698..1703 +
1694079860.412283-UTR-S-dermatodea_contig8241:1697..17031694079860.412283-UTR-S-dermatodea_contig8241:1697..1703Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8241 1698..1703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925331.0160108-CDS-S-dermatodea_contig8241:1703..18071622925331.0160108-CDS-S-dermatodea_contig8241:1703..1807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 1704..1807 +
1694079860.4214804-CDS-S-dermatodea_contig8241:1703..18071694079860.4214804-CDS-S-dermatodea_contig8241:1703..1807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 1704..1807 +
1622925331.0296113-CDS-S-dermatodea_contig8241:3687..38471622925331.0296113-CDS-S-dermatodea_contig8241:3687..3847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 3688..3847 +
1694079860.4323633-CDS-S-dermatodea_contig8241:3687..38471694079860.4323633-CDS-S-dermatodea_contig8241:3687..3847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8241 3688..3847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8241.16439.1

>prot_S-dermatodea_contig8241.16439.1 ID=prot_S-dermatodea_contig8241.16439.1|Name=mRNA_S-dermatodea_contig8241.16439.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
MSTLFAKKRDSSGKKRPRPSGTEQGGDLLGSAPTRTDKDEDATMSGHEGT
TTEPKRSRKIGKTSGTEIVEVDVDVDADTELGDERQVP
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mRNA from alignment at S-dermatodea_contig8241:1698..3847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8241.16439.1 ID=mRNA_S-dermatodea_contig8241.16439.1|Name=mRNA_S-dermatodea_contig8241.16439.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2150bp|location=Sequence derived from alignment at S-dermatodea_contig8241:1698..3847+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGTCATGTCTACTCTGTTTGCCAAGAAGCGAGACTCGTCGGGGAAGAA
GCGCCCACGTCCGTCCGGTACGGAGCAAGGCGGCGACCTGCTGGGATCGG
CCCCAACCAGGTGCGCTGTGCTGCTATCGTAGGAAGGCTTGTTGATTGAT
AGGCATGAGACCTGAGGCAGGGCAAGCGAGTCGAAGGAAGCTGGCATGCA
TGAGGTTATGGGCGTGTATGTACGTGTGTGTCTCTGTGTGTGTGTTGCTT
GATGCCTGGTGGACGCTGGTGCACAGCAGCACGCAGTATAGTGGTCCTCT
GCCTCGGGCGCTGTTCGTGTGTTACCATCGGTTAGCGCTAAAAGCCCCAC
CTCAGCAGTATATAGAGCTACAAGCGTATGATATCATAGATACACAAGTA
GTTGCAGTCTGGCGGCCTCAAGCAGTGGCGCACAGCGCACTGGCATAGAC
GGAAGGCCTAGATCGTCAGCGATGCCTTGCAGGTTCAAGCCTGTCCCCGA
CTGCGACCAGCGACACCGAGCGGGGGTTGTGGTTACTGCTGCGTGGTTGG
TGCGCCCAAGTCGATTTTGGGCGGTACTACAGCTGTACTGTTAAAATCAT
ATGGTCATCGATGCAGTTGATACTGACTATATTATACTCCGGAGTATTAA
GTAGCGCTCTAGACTCTAGAGCTCTAACAAGTACGAGTATATATAATACC
TGTACTTCGTTCTTCGTTCTTCGTTGTAGGTGGGATGCAACTCACCCATA
TATTGCTGCTGTGTATCATACCTCTGTAGCATGATATTGTTTGAAGGCAT
CATAATTATTTTTGGTATCATACTGCCCTGTAGGCGGAGGACCCGGGTTC
AAATCCCGGCAGAGTCGATATTTTTCTTTTTTTCTCTACTATAATACTAC
CTCCACCGCGGAAATTTCGCGAGACAGAGCGTGAGTAAGCAAAAAAAATC
CGAGAAATCGGCGAGCTGTGGGAGTGCCGAATCCAATGCGTTCGCGATAA
AAATCAAAGGTGAGAACCGGGGAGAGATGGGATGATCCCTTGTGACCACA
GTCGGACCTCGGAAAAGCAAGTGCATCGTATGTGTGCCAACAACAACAAC
AACAACAACTGCTGGTGTAGCAGCCGTGGCCGCAATTTTCTCAAGCTTAG
ACCCCGCCGTGACCCAAGAAGATGGCGTCTAAAACATAGAGCTATAATAG
CGTTGGCGTCCAAGTTTTTGCAAGGAAGGAAAAACGGTCCAGGCCAACCT
GATTCAGCCTTACGTATTCCTTGCATGATGATTGTTTTAGACACCTCCCC
TATATACCCCCCTATATATTCCCACCGCTTCGAATTTTGTTGCGTGCGCG
TGCGGCGCTTTCGCTTCCGAACGGAGATGAAGGCCCCTTTGCGGCATCTT
GGGGTATGCTATAATACTGTAGTCACGCCTATCATACTGGATGTGCAACA
TTTGGTTACCCGATATGTCCAACCAACCCACGGTATATCGGCTGTCGTCT
CAAACGCAAGGATGATGGCTAAATCGCAGCTGGTATCACACACCATCCTT
GTGAAACGCACGCAGCCTGGCCGGCGAAAACACATCCGGCATCTCTCCCC
GTCCCGGCATTGTTGGGACGCGTGGTCTACGTCCGTCTGGTTACGTCATT
CGTTTAACCTAAGTAACCCCCAGCCAGACGAAGGCGGTAGCTATACTGGG
GGATAAGAAAGGGCCTGAGAAGGCAAGACGCGATGTAGACAGCAGAGTAA
AAGCTTTTTTGCGCCACCTTTGGCGAAGTGTGAAGGAACGATTGGCTATG
GGCGATAGATCGATCCTGTGGGAACAATGCTCCGCCCTCTCGAGGACGCG
TCGTCAATGGTCTAACAGCTAACGCGTGCAAAACATGAGTACCACTCCCC
GCCCCCAACCTCACCCGACTACCCCCACCCCCAACTCCACCCCCACCCCC
ACCCCCCCACCACCGAAACGCCCGACCCTAACCATAACAGAACCGATAAG
GACGAGGACGCCACCATGAGCGGACACGAGGGCACAACGACGGAACCCAA
GCGCTCACGGAAAATCGGCAAAACCTCTGGTACTGAAATTGTCGAGGTCG
ACGTCGACGTCGACGCAGACACGGAGCTCGGGGACGAGCGGCAGGTGCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8241:1698..3847+

>mRNA_S-dermatodea_contig8241.16439.1 ID=mRNA_S-dermatodea_contig8241.16439.1|Name=mRNA_S-dermatodea_contig8241.16439.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig8241:1698..3847+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTACTCTGTTTGCCAAGAAGCGAGACTCGTCGGGGAAGAAGCGCCC
ACGTCCGTCCGGTACGGAGCAAGGCGGCGACCTGCTGGGATCGGCCCCAA
CCAGATGTCTACTCTGTTTGCCAAGAAGCGAGACTCGTCGGGGAAGAAGC
GCCCACGTCCGTCCGGTACGGAGCAAGGCGGCGACCTGCTGGGATCGGCC
CCAACCAGAACCGATAAGGACGAGGACGCCACCATGAGCGGACACGAGGG
CACAACGACGGAACCCAAGCGCTCACGGAAAATCGGCAAAACCTCTGGTA
CTGAAATTGTCGAGGTCGACGTCGACGTCGACGCAGACACGGAGCTCGGG
GACGAGCGGCAGGTGCCCAACCGATAAGGACGAGGACGCCACCATGAGCG
GACACGAGGGCACAACGACGGAACCCAAGCGCTCACGGAAAATCGGCAAA
ACCTCTGGTACTGAAATTGTCGAGGTCGACGTCGACGTCGACGCAGACAC
GGAGCTCGGGGACGAGCGGCAGGTGCCC
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