mRNA_S-dermatodea_contig824.16436.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig824.16436.1
Unique NamemRNA_S-dermatodea_contig824.16436.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig824.16436.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 6.090e-6
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:   55 VEGLKAAVEAKVDDIAANAPDMPSLDLKKPKKGMFSRLKKPSFRGKSKF---EVPDVDASASVPEAS 246
            + G K   EA   D +  APD+PS+D+KKPKK  F  LKKPSF  K K    E+P VD S  VP  S
Sbjct: 4708 LSGDKPDAEAPSVDASLTAPDIPSVDVKKPKKSKFG-LKKPSFMKKGKTSTPEIPGVDTSIDVPSVS 4773
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BLAST of mRNA_S-dermatodea_contig824.16436.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.550e-5
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   55 VEGLKAAVEAKVDDIAANA--PDMPSLDLKKPKKGMFSRL--KKPSFRGKSKFEVPDVD 219
            + G K   E    D+ AN   PD+PS+D+KKPK+G+F  L  KKPSF+GK+K  VPDVD
Sbjct: 2897 LSGDKPDAELPSGDVDANVSVPDVPSVDVKKPKRGLFGGLSFKKPSFKGKAK--VPDVD 2953
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig824.16436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB94_ECTSI6.090e-649.25Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9M1_9PHAE1.550e-552.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig824contigS-dermatodea_contig824:13789..14323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925330.852747-CDS-S-dermatodea_contig824:13788..138301622925330.852747-CDS-S-dermatodea_contig824:13788..13830Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 13789..13830 -
1694079860.3218706-CDS-S-dermatodea_contig824:13788..138301694079860.3218706-CDS-S-dermatodea_contig824:13788..13830Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 13789..13830 -
1622925330.8651514-CDS-S-dermatodea_contig824:14119..143231622925330.8651514-CDS-S-dermatodea_contig824:14119..14323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 14120..14323 -
1694079860.330739-CDS-S-dermatodea_contig824:14119..143231694079860.330739-CDS-S-dermatodea_contig824:14119..14323Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 14120..14323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig824.16436.1prot_S-dermatodea_contig824.16436.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig824 13789..14323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig824.16436.1

>prot_S-dermatodea_contig824.16436.1 ID=prot_S-dermatodea_contig824.16436.1|Name=mRNA_S-dermatodea_contig824.16436.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
VDASPSLPSGEVDASVPSVEGLKAAVEAKVDDIAANAPDMPSLDLKKPKK
GMFSRLKKPSFRGKSKFEVPDVDASASVPEAS
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mRNA from alignment at S-dermatodea_contig824:13789..14323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig824.16436.1 ID=mRNA_S-dermatodea_contig824.16436.1|Name=mRNA_S-dermatodea_contig824.16436.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=535bp|location=Sequence derived from alignment at S-dermatodea_contig824:13789..14323- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGACGCGAGCCCCTCGCTTCCCTCTGGAGAAGTGGACGCTTCCGTGCC
GTCTGTGGAGGGGCTGAAGGCGGCCGTGGAAGCGAAGGTGGACGATATCG
CGGCCAACGCTCCCGATATGCCTTCGTTGGACTTGAAGAAACCGAAGAAG
GGCATGTTCAGTCGTTTGAAGAAGCCGTCGTTCAGGGGCAAGAGCAAGTT
CGAGGTATATACGCTTTTCCTTTTTGCTTTGCAGTGGTAAGAGAGCAACT
CGACCAGCGTTTGACGCACGGGTTCGCGCACGCCCCCGCCCCCCTCCCCC
CTTTTGCCCCCGGGGCAAAGCTAAGACTTTTCGCTCATTCCTGTTGTAGA
AGATAAAAACCACAGTAATAACAGTACATCCACGTTCGGTGTAAACATTA
ACTTGTGACATTTGGATGGCACGCCGACGCGATCTTACACACGGTTGACC
GTTGTGCCCAACAAACATCTCCCTGTTGTGCCCCCCGTGACAGGTGCCGG
ATGTAGATGCATCTGCGTCGGTGCCCGAGGCTAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig824:13789..14323-

>mRNA_S-dermatodea_contig824.16436.1 ID=mRNA_S-dermatodea_contig824.16436.1|Name=mRNA_S-dermatodea_contig824.16436.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig824:13789..14323- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGACGCGAGCCCCTCGCTTCCCTCTGGAGAAGTGGACGCTTCCGTGCC
GTCTGTGGAGGGGCTGAAGGCGGCCGTGGAAGCGAAGGTGGACGATATCG
CGGCCAACGCTCCCGATATGCCTTCGTTGGACTTGAAGAAACCGAAGAAG
GGCATGTTCAGTCGTTTGAAGAAGCCGTCGTTCAGGGGCAAGAGCAAGTT
CGAGGTCGACGCGAGCCCCTCGCTTCCCTCTGGAGAAGTGGACGCTTCCG
TGCCGTCTGTGGAGGGGCTGAAGGCGGCCGTGGAAGCGAAGGTGGACGAT
ATCGCGGCCAACGCTCCCGATATGCCTTCGTTGGACTTGAAGAAACCGAA
GAAGGGCATGTTCAGTCGTTTGAAGAAGCCGTCGTTCAGGGGCAAGAGCA
AGTTCGAGGTGCCGGATGTAGATGCATCTGCGTCGGTGCCCGAGGCTAGC
GTGCCGGATGTAGATGCATCTGCGTCGGTGCCCGAGGCTAGC
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