mRNA_S-dermatodea_contig824.16433.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig824.16433.1
Unique NamemRNA_S-dermatodea_contig824.16433.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig824.16433.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.130e-10
Identity = 48/99 (48.48%), Postives = 52/99 (52.53%), Query Frame = -2 
Query:    3 APSVDLAGKMPSVEGEISGDLPSAEVSASVPDVSGDVSLPFXXXXXXXXXXXXXXXXXXXSVGDVEVSAPDVKVEGGDASLIGGLAAGAVAAVGAIGAA 299
            APSVDLAGKMPSV+G ++G LPS                                       GDV V+APD KVEGGD SL  GLAAG VAAVGAIGAA
Sbjct:  991 APSVDLAGKMPSVQGGVAGKLPS---------------------------------------GDVSVTAPDAKVEGGDTSLTAGLAAGGVAAVGAIGAA 1050
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BLAST of mRNA_S-dermatodea_contig824.16433.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.550e-10
Identity = 48/96 (50.00%), Postives = 51/96 (53.12%), Query Frame = -2 
Query:    3 VDLAGKMPSVEGEISGDLPSAEVSASVPDVSGDVSLPFXXXXXXXXXXXXXXXXXXXSVGDVEVSAPDVKVEGGDASLIGGLAAGAVAAVGAIGAA 290
            VDLAGKMPSVEG +SG+LPS                                       GDV V+APDVKVEGGD SL  GLAAG VAAVGAIGAA
Sbjct: 2196 VDLAGKMPSVEGGVSGELPS---------------------------------------GDVSVTAPDVKVEGGDTSLTAGLAAGGVAAVGAIGAA 2252
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig824.16433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9M1_9PHAE1.130e-1048.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB94_ECTSI1.550e-1050.00Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig824contigS-dermatodea_contig824:1762..2061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size301
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925330.8122034-CDS-S-dermatodea_contig824:1761..20611622925330.8122034-CDS-S-dermatodea_contig824:1761..2061Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 1762..2061 +
1694079860.3103402-CDS-S-dermatodea_contig824:1761..20611694079860.3103402-CDS-S-dermatodea_contig824:1761..2061Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig824 1762..2061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig824.16433.1prot_S-dermatodea_contig824.16433.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig824 1762..2061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig824.16433.1

>prot_S-dermatodea_contig824.16433.1 ID=prot_S-dermatodea_contig824.16433.1|Name=mRNA_S-dermatodea_contig824.16433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
MAAPIAPTAATAPAARPPIREASPPSTFTSGADTSTSPTEGISQETSPPT
SGVLPARSTNGSETSPETSGTEADTSAEGRSPEISPSTEGILPARSTDGA
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mRNA from alignment at S-dermatodea_contig824:1762..2061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig824.16433.1 ID=mRNA_S-dermatodea_contig824.16433.1|Name=mRNA_S-dermatodea_contig824.16433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig824:1762..2061+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTGCCCCGATAGCCCCGACCGCCGCCACCGCCCCCGCGGCCAGACC
CCCGATCAGAGAAGCGTCTCCGCCCTCCACCTTCACGTCCGGCGCCGACA
CTTCCACGTCACCAACGGAGGGCATCTCGCAAGAGACCTCGCCTCCGACC
TCGGGCGTCTTGCCGGCCAGGTCCACGAACGGAAGCGAGACATCTCCGGA
GACGTCGGGGACCGAGGCGGACACCTCAGCTGAGGGGAGGTCGCCAGAGA
TTTCCCCTTCGACCGAAGGCATCTTGCCAGCTAGGTCGACCGACGGCGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig824:1762..2061+

>mRNA_S-dermatodea_contig824.16433.1 ID=mRNA_S-dermatodea_contig824.16433.1|Name=mRNA_S-dermatodea_contig824.16433.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig824:1762..2061+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTGCCCCGATAGCCCCGACCGCCGCCACCGCCCCCGCGGCCAGACC
CCCGATCAGAGAAGCGTCTCCGCCCTCCACCTTCACGTCCGGCGCCGACA
CTTCCACGTCACCAACGGAGGGCATCTCGCAAGAGACCTCGCCTCCGACC
TCGGGCGTCTTGCCGGCCAGGTCCACGAACGGAAGCGAGACATCTCCGGA
GACGTCGGGGACCGAGGCGGACACCTCAGCTGAGGGGAGGTCGCCAGAGA
TTTCCCCTTCGACCGAAGGCATCTTGCCAGCTAGGTCGACCGACGGCGCC
ATGGCTGCCCCGATAGCCCCGACCGCCGCCACCGCCCCCGCGGCCAGACC
CCCGATCAGAGAAGCGTCTCCGCCCTCCACCTTCACGTCCGGCGCCGACA
CTTCCACGTCACCAACGGAGGGCATCTCGCAAGAGACCTCGCCTCCGACC
TCGGGCGTCTTGCCGGCCAGGTCCACGAACGGAAGCGAGACATCTCCGGA
GACGTCGGGGACCGAGGCGGACACCTCAGCTGAGGGGAGGTCGCCAGAGA
TTTCCCCTTCGACCGAAGGCATCTTGCCAGCTAGGTCGACCGACGGCGCC
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