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Homology
BLAST of mRNA_S-dermatodea_contig824.16434.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 1.570e-5 Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 4 IGLSGDSGKVEAEVPDVDVSAEXXXXXXXXXXXXXXLDVKKPKKSLFGGISFKKPSSKAKMEVPDV 201
+GLSGD K +AE+P DV A +DVKKPKK LFGG+SFKKPS K K +VPDV
Sbjct: 2534 VGLSGD--KPDAELPSGDVDASVSVPDVPS------VDVKKPKKGLFGGLSFKKPSLKGKAKVPDV 2591
BLAST of mRNA_S-dermatodea_contig824.16434.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 3.840e-5 Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 4 IGLSGDSGKVEAEVPDVDVSAEXXXXXXXXXXXXXXLDVKKPKKSLFGGISFKKPSSKAKMEVPDV 201
+GLSGD K +AE+P DV A +DVKKPK+ LFGG+SFKKPS K K +VPDV
Sbjct: 2895 VGLSGD--KPDAELPSGDVDANVSVPDVPS------VDVKKPKRGLFGGLSFKKPSFKGKAKVPDV 2952
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 632 |
| Cds size | 630 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig824.16434.1 >prot_S-dermatodea_contig824.16434.1 ID=prot_S-dermatodea_contig824.16434.1|Name=mRNA_S-dermatodea_contig824.16434.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=210bp
GIGLSGDSGKVEAEVPDVDVSAEAPSGSAEASLPTGELDVKKPKKSLFGG
ISFKKPSSKAKMEVPDVSAPEVAAAVAEVAVPSVDPSIPGVEGGLKGPDV
SADMPSVGAAEGSLPTGDMDLSTPSAELKKPKKGRFGSLFKAGSFKGKME
APAVDAAGDVPSVDVPSVDVQSVGASVDAPAVDVAVAVDAPTASLELPGG
MKAPSVDLAG back to topmRNA from alignment at S-dermatodea_contig824:2037..9053- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig824.16434.1 ID=mRNA_S-dermatodea_contig824.16434.1|Name=mRNA_S-dermatodea_contig824.16434.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7017bp|location=Sequence derived from alignment at S-dermatodea_contig824:2037..9053- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCATCGGGCTCTCGGGCGACAGCGGGAAGGTGGAGGCGGAGGTGTGTGG
CTAGCAAGGGGATTTACGCTGTTAGTGTGCTCCCGATATGCTCAAAAGCT
TGCGCTAATAATTTACTGTTCGTATGACCACGAGCCGATCGGCAAGCATT
GGTGGGCTGGTCGGTTGTATGTGTGATGATTAAATCAATCAATCAACCAA
TCAATCAGTATGGGTGGTGTTTTGCCAGCGCTGGAGCCCGACAGATGGAT
GGAAATTACCGTTTTTTTTTTTTTTTCGTTTATCCGATATATTTAGTGTT
GGGCGAGTCTGACGTGTAGTGCGGGCTTTAAGGGAATAAATCCTGAACTC
GCCCCGTTGTCCACCATCTTGTCGATACCGGCGCGTGGAGTGGTGCCCTC
TTGCGTGGCTGCCACGCTAGCACGCACAGCAGTACAGTCCACCCTTTTTT
ATCGCGGACAGACCAGACCAGACCAGACCCTCTTCATCACGATGCTGCGC
GTTTGCTCTCCAGTCCCGGCGTTCGCTCTCTCTGCACGGGTTTTGGTCTG
TTTGACGATGTTGCCTTTTAAGTTTTTAACTCGACCGTCAGTTCCTATAA
TACTGTTGTCCTGTTTGTCGGGGGGGGGGTTTCGTCAACCAAGCGAAAGG
CGTTTTGGATGGCACGTGACAGGAGGCGGCTCCCACCTTTGTTACGCTCG
CACGCACGCCTCACACCTCGTCTCGTTTTGTTTTGCGAACTAACCTTGCC
AGGTGCCGGACGTGGACGTGTCTGCCGAGGCTCCATCCGGTAGCGCTGAA
GCCTCTCTGCCGACTGGAGAACTCGACGTGAAGAAGCCGAAGAAGAGCCT
GTTCGGCGGCATTTCGTTCAAGAAGCCTTCGAGCAAGGCCAAGATGGAGG
TCAGTCGCGCTTGACTCGAAGAATTCGAAAACGCCTTCCATCCTCCGTGT
TTTGTAGTGTTCTGTTTGTGGCAATTTTGTTCCTTTTTTTTTTTTTTCCT
TGCTGTTCTTCCGATGTGATATCATACTGGGTTTGTTGTTGATACAACTG
ATATGGTGTGTGTGCGATTTATTTGCCTGTGTGCATACCGCCCGCGTTCG
AGCCTCGCGCGTTTCTGTTTTCCTCACCGAATGCATGCACTCACTCACTT
GGCCATCACGACGAACCCTTTTGGGACTAAGGCTGTTTTCGGGTAACTGT
TTGCTATTGTTATACTTGTATACACTTTTGGAACTAAGCCTGGGGACGAA
GGTTGTTTTCGGGTAACTGTTGGCTGCCATGGTCGCAAACAGTTACCCGA
GAACAGCCTTCGTCCCAAAACAAAAGGATACATAATAATAGCAAACAGTT
ATGATACCCGAAACCAGCCTGAGTTCCAAAAGGGTTAAGCATTTGTACTT
TGGTTGAATGAAGCGATCGAGTTGTTGGTAGCGCACGGTGTGCTCACAAC
CGCCTCTTTGCATGTATCCTATCCTACCGCTGCAGGTGCCGGATGTGTCT
GCCCCTGAAGTTGCCGCGGCTGTCGCTGAGGTGGCGGTGCCATCCGTCGA
CCCCTCCATTCCCGGTGAGATAGCGAGTGCATCGGACTAACGGGGGTGGG
GGCTATCTCGCTATTGCCCGCGGCATCCTATTAATACTATTAATATGGAT
ACTCTACTGATAGTTTTGGTCGCATTTATCATAACGTTGTTGCTGTTTTT
TTCTTTTTTCACACGTGAGCGGATGTAAACTATCTATTGATTGTTTTGTT
TTGTTTTTCACGTGTGAACGGGTGGGTGGGTGAGTGGGTGTCAAATGTCC
GGTCGTTGTGGCGAAATTTTTGTGTTGTCGCTGGTTTGTTGTTATTTTTA
CTGCACATGAACTGATGTCGAGAATCTACGGAGCTGTGTGCTTCACACGA
GTTTGGCGAATCAAGGAAGAAGACACAAAACAAAAGCGTTTACTTGTATG
TATAGTATAGTATAGTAGTGGTAAATTACAAACAGGTCCTTGTTGTGAGC
CTTGTAAATAGGCTATTCCAACACTGTTTTTTTTGTTTTTCTTCTTCTAT
CGAAATGTGTTCAGTTTGGGTTTTTGTTGAGAAACGAACGCGCTTGCCGT
TGCAACCTGGGAGAGCTTGCACACACACACACACACGTTATGATATAAAG
CAGCCCTACGCCTGCTCTCGAAGGCACATTGTGTACTTCTGCAGTGGGGT
TAGGCGTAGGGAATTAATCATAGAGTGGAAAGTATGGAGCCACACAGGGG
GCACATTTCGTACCTCTGCTTTTGGGTTAGGTTTAGGGACATACTGTATA
TACTTGTACTTGTGGTGGGAAGTCTTGAGCCACACACACACATGGAACAT
ATTACTATAACACTACTTTAGAATATAGGGTCGGTACTTGTAGGGTCGGT
ACTTGTACTTGCACTTAATATGCTTAGGACCGGGACCCCCTCCCCCCCCC
CGTACGTGTATGATACGGCCAGGTGTCGACTCATGCCTTGCTTGAAACTT
AACACAAGTTTTTGTTTTTTGTCCGCATGTCTTCCGCCCTCGCGTCCTTT
TCCAACAAACATCACACTGCTGTCGTTCCTGTCTTCTAAACCGCCGCAGG
TGTAGAGGGTGGTCTCAAGGGCCCCGACGTATCAGCAGACATGCCTTCTG
TCGGCGCGGCCGAAGGTTCGCTGCCGACTGGAGATATGGACCTCTCGACT
CCGTCGGCCGAGCTCAAGAAGCCCAAGAAGGGTAGGTTCGGCAGCCTTTT
CAAGGCAGGGTCCTTCAAGGGCAAGATGGAGGTGTGTGGGATGTATTTTC
TTGCTTTTTTTTGTTGTTCGTATATTTTTTTTGGCGAGCACGTTTTCGTA
TTTTTTTGTTTTAAGTGGTTTTATTGTTGTGTCACACATGCAGCCGATTG
GCCTCTCCAGTCCGATCCCGCTCGGTTACAAAGAATAATTCGAGGGGGCG
AAGAGTGCATAAACAAAGCCTCCGGGAGGCACACATTTTAACATTCGCAA
AAATAAAAATTTGTCAAAAGAGGGAAGAATTTTTTTCGTTGGCTGGCTGG
CTGGCTGGCTGGCTGGCTGGCTGGCTGTTTATAAGAGTTCTGGGGGTAAA
GGTTGTACCCGTGTTTTTCGAAAGGTGCTCGTCATCTCGCATCCCCGGCG
GTTCCGGTGTGTACCGGTGGCGTACATACGAAAGTTGCTTTGTGGACCTT
GAATCTGCTGATGCTGCTTACTGTTACGCCTTGTGCTCAGTTCGGACAAT
GCGCGCGTTTGCCGCCGTGCTTACATAACCGCTCCACTCGCCCCCTTGTT
GTTTCGCAGGCGCCCGCTGTGGATGCTGCGGGTGACGTGCCGTCGGTCGA
TGTGCCGTCGGTTGATGTGCAGTCCGTGGGTGCCTCGGTAGATGCGCCTG
CGGTGGACGTGGCCGTGGCCGTAGACGCCCCGACCGCTTCGCTTGAGCTT
CCTGGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGACGACACCTCGT
TTAGGTTTTTCGATTGTTTATCATTCTACAATGCAAATGCAGCACTACTT
GCCTTTTTGTCTTGTACTTGCCTTTTTGTGTTGTGCTTGCCTTTTTGTGT
TGTACTTGCCTTTTGAATACGAGCGCGCCGCCTCCGATCGCCCCCCTCCC
CCACCTCCTGAGTTTGGAGTTTGGAGCCTCCGCGATGACATCGGAAAAAA
ATCGTTCTTATCGGGGTTGTGTCGATCCTCCGTTCCGCTTTCGTCCGTCC
GTTCGCTCTACCACCGTGGACCTGAGCTCATTGTTGTGAGGTTTTTTTCT
TCCGTCATTCGTGTCCCGTGCGCTATTCCGACGTCGCACGACGTGGGGGC
GGCATAACGCACTGAAACGAACACGTTTGCCCCTCCCCATAACGTTTTGT
TATCCTGGTTCTGAAAAAAACTCGCTTGGGTTTTGGGAACATAGGCGCGG
AGGGTAACCTGGCGGCGCCCGAGATGCCACCCGTCAGCGCCTCGCTTCCC
ACGGTCACTACCGGTGAGGTTGAAGCGCCTTCCATAAGGGCAGAAGTGCC
GTCCGGTGGCGCCGATGTTTCCGGCCCCTTATCGGATGTATCGGGAGATG
TTTCGGTTCCACCCGTTGGCTCTGTTGTTCCGTCGGTGATCGCTGGACTC
TCTTCCGCCCCCGTTGACATTTCCGGCTCTGTGCCGGATGTGCCCGCACC
TTCGATGGGTGTCGAACTCCCTATCGTCGCGTCCGACGTTTCCGGTTCCG
TGCCCGATGTTTGCGCGCGGGTTTCAGTGCCTTCGATGAGCGTCGAAACT
CCTTCGGTTACCGCGGACGTATCGGGTGGTCCCGTCCCGGACATCTCCGG
GGATGTTCCCTCGGTCGGTGCCGAAGTCCCTTCTGTCACAGCCGACATGT
CCGCCGCCGGCTCTGTGCCGGCTATGTCCGAAGATTTGTCCGTACCTTCG
ATAGGTGTCGAAGCCCATTCCGTTGCGCCCGACGTTTCCGTTTCAGTGCC
CGAAATTTCCGGGGGTGTACCTTCGATGGTCTCCGATCTTCCGTCAGTGA
TCGCTGAACTCCCTTCCGTCACCGCCGACATTTCCGGCTCTGTTCCGGAT
ATGCTCGCACCTTCGAAGGGTGTCGAAGCACCTTCCGTTGCGCCCGACGT
TTCCGTTTCCGTGCCCGAAATTCCCGGGGGTGTGCTTTCGATGGGCTCCG
ATCCTCCATCAGTGAGCGCTAAACCCCCTTCGGTAACCGCCGATGTTTCT
GGCTCAGTGCCGGATGTGTCCGGGGAGGTTTCTGTACCCTCGATCGGTGC
CGAAGCTCCTTCCGTTGCGCCCAACGTTTCCGGTTCCGTTGCGCCTGGCG
TTTCCGTGTCCGTGCCGGAAATTCCCGGAGATGCGCCTTCGATGGGCTCC
GATCTCCCGTCAGTGAGCGTTGTACCCCCTTCGATCACCGCCGACGTTTT
CTGTGTATGTGGCCGGATGGTTTCCGTACCCTCGGTGGGCGTGGAAGCCC
ACCCCGCTGCGCCCGAAGTTTCCGGTTCCGTTACTCCTGACGTTTGCGTT
CCCACGCCCGAAATCCCCAGCGATGTGCCTTCGATGGGCTCCGATCTTCC
GTCAGTGAGCGCTAAACTCCCTTCCGTCATCGCCGATATCTCCGGCTCCG
TGCCGGATGTGTCCGGGGAGGTTTCTGTACCCTCGGTGGGTGTGGTGGAA
GTCCCTTCCGTTGCGCCCAACGTTTCCGGTTCCGTTGCGCCCGACGTTTG
CGTTTCCGTGCCCGAACTTCCCGGGGATTCGCCCTCGATGGGCTCCGATC
GTCCGTCGGTGATGGCTGAAATCCCTTCGGTCACCGCCGACGTTTCCGGC
TCCGTGCCGGATGTGGCCGGGGGGGGTTCTGTACCCTCGAAGGGTGTTGA
AGCCCCCTCCGTTGCTCCCAACGTTTCCGGTTCCGTTGCGCCTGGCGTTT
CCGTGTCCGTGCCGGAAATTCCCGCGGATGCGCCTTCGATGGGCTCCGAT
CTTTCGTCAGTGATCGCCGAAATCCCTTCGGTCACCGCCGACGTTTCCGG
CTCTGTGCCGGATATGCCCGGGGTGGTTCCCGTACCCTTGATGGGCGTGG
AAACCCCCTCCGCTGCGCCCGAAGTTTCCGGTTCCGTTGCGCCCGACGTT
TGCGTTTCCACGCCCAAAATCCCCGGCGATGTGCCTTCGATGGGCTACGA
TCTTCCGTCAGTGAGCGCTAAACTCCCTTCCGTCATCGCCGATATTTCGG
GCTCCGTACCGGATGTGTCCGGGGAGATTTCTGCACCCTCGATGGGTGTG
GAAGTCCCTTCCGTTGCGCCCGACGTTTCCGTTTCCGTGCCCGAGATTCC
CGGGGATTTGCCTTCGATGGGCTACGATCTTCCGTCAGTGGCCGCTGAAA
TCCCTTCGGCCACCACCGACGTTTCCGGCCCCGTGCCGGATGTGGCCGGA
ACGGTTTCTGTACCCTCGATAGGTGTCGAAATTCCTTCCGTTGCGCCCGA
CGTTTCGGTTTCCATGCCCGAAACTTGGGGGGATTTGACTTCCATGGCCT
CCGGTCTTCCGTCGTTGAGCGGTGTACTCCCTTCGGTCACCGCCGACGTT
TCCGGCTCTGTGCCGGACGTGCCCGGGGAGGTTTCTGTACCCTCGATGGG
CGTCGAACTCCCTTCCGCTAGTGACCTCCCGTCTGGCACTGCTGAAATTT
TCCTGCCGGGCGGGACCGCAGATGTATCCACGCCGTCTGTCAACGTAGAC
GTGCCGTCGGGCTCCGGTGGTGTGATGGGTGAGTCGTTCGCAACAACAGT
CTCCGATCGCAGGACGTGCGTACCGTACCCTCGAGCGAGCTCGCGCTGCT
GCTACTTGACGACGACGGTGTCGGGTATATACAGGGAAACCTTTCCTTTT
GTTTGTTTTTGCTTGGTTCGTTCTGCCGCTCGCCCCGCCGCCGGTCTCCG
GTCTCCACAATTGTCCCGTCAAACGGCCCATCGCGCGCGGCGTGAACGCG
GTTTCCAGCCCACGCGCGCGGCGCAGCCGTGGTTTGATCGATCACCCACC
GAGTGCGTGAAAACTGCGGGGATGTGCTGCGCGCTCAAGCTCCGACTATA
ATAGTACGTGTACGTAGCTGTGTGTGTGTGTGTGTTTTTTTTTTTTTTTT
TTTTTTTTCGCTTTTTTTTTTTTCTGCACACTGCAACGACGGGTGGTTGT
TCCCTGGNNNNNNNNNNGTCTCTGTCCGCCCCCGGGCGGGGCGGCGCGCT
GTGTCTCTTCCTTTACTCGTCCGTGGACGTGGCTGTGTGTGTGGGTGTGT
TTTTTTTTTTTTTTTTTTTTTTCTCGCTCGATTTAGCTGCTGCACACTGC
AACGACGGGTGCTGCTTCCGTGGTGTGCAGCGCCGAGAGGCGCGCTGTTT
CCCACCCGATGCTGAGATAGCTCCTTTTTCGCGCGCCCTTGACTCTTCCA
CCGTTAACGAAACAAAAAATTTGTGTCCCCAGGCGGAATGAAGGCGCCGT
CGGTCGACCTAGCTGGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig824:2037..9053- >mRNA_S-dermatodea_contig824.16434.1 ID=mRNA_S-dermatodea_contig824.16434.1|Name=mRNA_S-dermatodea_contig824.16434.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at S-dermatodea_contig824:2037..9053- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCATCGGGCTCTCGGGCGACAGCGGGAAGGTGGAGGCGGAGGGCATCGG
GCTCTCGGGCGACAGCGGGAAGGTGGAGGCGGAGGTGCCGGACGTGGACG
TGTCTGCCGAGGCTCCATCCGGTAGCGCTGAAGCCTCTCTGCCGACTGGA
GAACTCGACGTGAAGAAGCCGAAGAAGAGCCTGTTCGGCGGCATTTCGTT
CAAGAAGCCTTCGAGCAAGGCCAAGATGGAGGTGCCGGACGTGGACGTGT
CTGCCGAGGCTCCATCCGGTAGCGCTGAAGCCTCTCTGCCGACTGGAGAA
CTCGACGTGAAGAAGCCGAAGAAGAGCCTGTTCGGCGGCATTTCGTTCAA
GAAGCCTTCGAGCAAGGCCAAGATGGAGGTGCCGGATGTGTCTGCCCCTG
AAGTTGCCGCGGCTGTCGCTGAGGTGGCGGTGCCATCCGTCGACCCCTCC
ATTCCCGGTGCCGGATGTGTCTGCCCCTGAAGTTGCCGCGGCTGTCGCTG
AGGTGGCGGTGCCATCCGTCGACCCCTCCATTCCCGGTGTAGAGGGTGGT
CTCAAGGGCCCCGACGTATCAGCAGACATGCCTTCTGTCGGCGCGGCCGA
AGGTTCGCTGCCGACTGGAGATATGGACCTCTCGACTCCGTCGGCCGAGC
TCAAGAAGCCCAAGAAGGGTAGGTTCGGCAGCCTTTTCAAGGCAGGGTCC
TTCAAGGGCAAGATGGAGGTGTAGAGGGTGGTCTCAAGGGCCCCGACGTA
TCAGCAGACATGCCTTCTGTCGGCGCGGCCGAAGGTTCGCTGCCGACTGG
AGATATGGACCTCTCGACTCCGTCGGCCGAGCTCAAGAAGCCCAAGAAGG
GTAGGTTCGGCAGCCTTTTCAAGGCAGGGTCCTTCAAGGGCAAGATGGAG
GCGCCCGCTGTGGATGCTGCGGGTGACGTGCCGTCGGTCGATGTGCCGTC
GGTTGATGTGCAGTCCGTGGGTGCCTCGGTAGATGCGCCTGCGGTGGACG
TGGCCGTGGCCGTAGACGCCCCGACCGCTTCGCTTGAGCTTCCTGGCGCC
CGCTGTGGATGCTGCGGGTGACGTGCCGTCGGTCGATGTGCCGTCGGTTG
ATGTGCAGTCCGTGGGTGCCTCGGTAGATGCGCCTGCGGTGGACGTGGCC
GTGGCCGTAGACGCCCCGACCGCTTCGCTTGAGCTTCCTGGCGGAATGAA
GGCGCCGTCGGTCGACCTAGCTGGCGCGGAATGAAGGCGCCGTCGGTCGA
CCTAGCTGGC back to top
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