mRNA_S-dermatodea_contig82244.16419.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82244.16419.1
Unique NamemRNA_S-dermatodea_contig82244.16419.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: D7FZF2_ECTSI (Autophagy-related protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF2_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.740e-20
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGR 153
            +ELL+VLFAP+ILCFSMPSCAQEI++FV  HTV+V GVGSVCSYS+FDFGR
Sbjct:  473 EELLAVLFAPVILCFSMPSCAQEIVEFVTEHTVEVPGVGSVCSYSVFDFGR 523
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: A0A6H5K9U8_9PHAE (Autophagy-related protein 9 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.740e-20
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGR 153
            +ELL+VLFAP+ILCFSMPSCAQEI++FV  HTV+V GVGSVCSYS+FDFGR
Sbjct:  426 KELLAVLFAPVILCFSMPSCAQEIVEFVTEHTVEVPGVGSVCSYSVFDFGR 476
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: A0A7S2D6I8_9STRA (Autophagy-related protein 9 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6I8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.900e-15
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGR 153
             E+L VL AP +LC SMP+ A++++ F+  HTVDVEG+GSVC YSLFDFGR
Sbjct:   18 DEILVVLLAPFVLCVSMPAAAEDMLRFIREHTVDVEGIGSVCGYSLFDFGR 68
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: A0A4D9D5X3_9STRA (Autophagy-related protein 9 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5X3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.400e-14
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGRC 156
            QE+LSVL  P+ILCFS+P+CA  I+ FV  H   VEGVGSVC YSLFD  RC
Sbjct:  603 QEVLSVLVTPLILCFSLPACASRILAFVKSHHRTVEGVGSVCDYSLFDLDRC 654
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: W7TMH9_9STRA (Autophagy-related protein 9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMH9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.330e-14
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGRC 156
            QE+LSVL  P+ILCFS+P+CA  I+ FV  H   VEGVGSVC YSLFD  RC
Sbjct:  607 QEVLSVLVTPLILCFSLPACAGRILAFVKSHHRTVEGVGSVCDYSLFDLDRC 658
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: UPI0003F48D1B (uncharacterized protein n=1 Tax=Tremella mesenterica (strain ATCC 24925 / CBS 8224 / DSM 1558 / NBRC 9311 / NRRL Y-6157 / RJB 2259-6 / UBC 559-6) TaxID=578456 RepID=UPI0003F48D1B)

HSP 1 Score: 70.5 bits (171), Expect = 7.700e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGRCVL 162
            QELLSVL  P +L FS+P CA EIIDF    TV V+GVG VCS+++FDFGR  L
Sbjct:  519 QELLSVLLTPFVLLFSLPPCAGEIIDFFREFTVHVDGVGYVCSFAVFDFGRPAL 572
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: A0A4Q1BQW0_TREME (Autophagy-related protein 9 n=1 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BQW0_TREME)

HSP 1 Score: 70.5 bits (171), Expect = 7.720e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGRCVL 162
            QELLSVL  P +L FS+P CA EIIDF    TV V+GVG VCS+++FDFGR  L
Sbjct:  820 QELLSVLLTPFVLLFSLPPCAGEIIDFFREFTVHVDGVGYVCSFAVFDFGRPAL 873
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: I1CE06_RHIO9 (Autophagy-related protein 9 n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CE06_RHIO9)

HSP 1 Score: 68.6 bits (166), Expect = 2.180e-12
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGR 153
            QELLSVLFAP++LCFS+P  A +IIDF    TV V G+G VCS++ FDF R
Sbjct:  101 QELLSVLFAPLVLCFSLPKSADQIIDFFREFTVHVNGLGYVCSFAQFDFER 151
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: A0A0L0HR18_SPIPD (Autophagy-related protein 9 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HR18_SPIPD)

HSP 1 Score: 67.8 bits (164), Expect = 6.860e-12
Identity = 29/51 (56.86%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGR 153
            QE++SVLFAP+IL +S+PSCA++I+DF    TV V+ +G VCS+++FDF R
Sbjct:  615 QEIMSVLFAPVILWYSLPSCAEQIVDFFREFTVHVDSLGYVCSFAVFDFQR 665
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BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Match: A0A367JLE0_RHIST (Autophagy-related protein 9 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367JLE0_RHIST)

HSP 1 Score: 67.0 bits (162), Expect = 8.880e-12
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFGR 153
            QELLSVLFAP+ILCFS+P  A +I+DF    +V V G+G VCS++ FDF R
Sbjct:  166 QELLSVLFAPLILCFSLPKSADQIVDFFREFSVHVNGLGYVCSFAQFDFER 216
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82244.16419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZF2_ECTSI2.740e-2080.39Autophagy-related protein 9 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K9U8_9PHAE3.740e-2080.39Autophagy-related protein 9 n=1 Tax=Ectocarpus sp.... [more]
A0A7S2D6I8_9STRA1.900e-1562.75Autophagy-related protein 9 (Fragment) n=1 Tax=Flo... [more]
A0A4D9D5X3_9STRA3.400e-1465.38Autophagy-related protein 9 n=1 Tax=Nannochloropsi... [more]
W7TMH9_9STRA6.330e-1465.38Autophagy-related protein 9 n=1 Tax=Nannochloropsi... [more]
UPI0003F48D1B7.700e-1362.96uncharacterized protein n=1 Tax=Tremella mesenteri... [more]
A0A4Q1BQW0_TREME7.720e-1362.96Autophagy-related protein 9 n=1 Tax=Tremella mesen... [more]
I1CE06_RHIO92.180e-1262.75Autophagy-related protein 9 n=1 Tax=Rhizopus delem... [more]
A0A0L0HR18_SPIPD6.860e-1256.86Autophagy-related protein 9 n=2 Tax=Spizellomyces ... [more]
A0A367JLE0_RHIST8.880e-1260.78Autophagy-related protein 9 (Fragment) n=1 Tax=Rhi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82244contigS-dermatodea_contig82244:491..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7FZF2
Preferred nameATG9A
KEGG koko:K02349,ko:K17907,ko:K19672
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04137,ko04138,ko04140,map04136,map04137,map04138,map04140
GOsGO:0000003,GO:0000045,GO:0000139,GO:0000272,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0000421,GO:0000422,GO:0001817,GO:0001818,GO:0001894,GO:0001932,GO:0001934,GO:0002165,GO:0002376,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007586,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009251,GO:0009267,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009628,GO:0009653,GO:0009791,GO:0009886,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010498,GO:0010562,GO:0010604,GO:0010623,GO:0010646,GO:0010647,GO:0010648,GO:0010669,GO:0012501,GO:0012505,GO:0012506,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016052,GO:0016192,GO:0016236,GO:0016237,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0019954,GO:0022411,GO:0022600,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030054,GO:0030154,GO:0030163,GO:0030277,GO:0030587,GO:0030659,GO:0031090,GO:0031152,GO:0031153,GO:0031224,GO:0031288,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032006,GO:0032007,GO:0032258,GO:0032268,GO:0032270,GO:0032479,GO:0032480,GO:0032501,GO:0032502,GO:0032588,GO:0032648,GO:0032688,GO:0032872,GO:0032874,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034497,GO:0034599,GO:0034613,GO:0034727,GO:0035069,GO:0035096,GO:0040011,GO:0042175,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042331,GO:0042592,GO:0042594,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043410,GO:0043632,GO:0043933,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044257,GO:0044260,GO:0044262,GO:0044264,GO:0044265,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0044804,GO:0044805,GO:0045087,GO:0045937,GO:0046328,GO:0046330,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048707,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0055037,GO:0055114,GO:0060033,GO:0060249,GO:0060255,GO:0060729,GO:0061709,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070302,GO:0070304,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0080090,GO:0080134,GO:0080135,GO:0090382,GO:0090702,GO:0097708,GO:0098542,GO:0098588,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1902533,GO:1903008,GO:1905037
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG2173@1,KOG2173@2759
EC2.7.7.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029,ko03036,ko03400,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAutophagy-related protein 9
Ec32 orthologEc-19_003090.1
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.5494423-CDS-S-dermatodea_contig82244:490..6521622925329.5494423-CDS-S-dermatodea_contig82244:490..652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82244 491..652 -
1694079859.4414394-CDS-S-dermatodea_contig82244:490..6521694079859.4414394-CDS-S-dermatodea_contig82244:490..652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82244 491..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82244.16419.1prot_S-dermatodea_contig82244.16419.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82244 491..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82244.16419.1

>prot_S-dermatodea_contig82244.16419.1 ID=prot_S-dermatodea_contig82244.16419.1|Name=mRNA_S-dermatodea_contig82244.16419.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
QELLSVLFAPIILCFSMPSCAQEIIDFVAGHTVDVEGVGSVCSYSLFDFG
RCVL
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mRNA from alignment at S-dermatodea_contig82244:491..652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82244.16419.1 ID=mRNA_S-dermatodea_contig82244.16419.1|Name=mRNA_S-dermatodea_contig82244.16419.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig82244:491..652- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGCTCCTTTCCGTCCTGTTCGCGCCGATCATCCTCTGCTTTTCCAT
GCCAAGCTGCGCCCAGGAGATCATCGATTTCGTTGCAGGCCACACGGTGG
ACGTGGAAGGGGTCGGATCCGTCTGCAGCTACAGCCTCTTTGACTTTGGG
AGGTGCGTGTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig82244:491..652-

>mRNA_S-dermatodea_contig82244.16419.1 ID=mRNA_S-dermatodea_contig82244.16419.1|Name=mRNA_S-dermatodea_contig82244.16419.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig82244:491..652- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGCTCCTTTCCGTCCTGTTCGCGCCGATCATCCTCTGCTTTTCCAT
GCCAAGCTGCGCCCAGGAGATCATCGATTTCGTTGCAGGCCACACGGTGG
ACGTGGAAGGGGTCGGATCCGTCTGCAGCTACAGCCTCTTTGACTTTGGG
AGGTGCGTGTTGCAGGAGCTCCTTTCCGTCCTGTTCGCGCCGATCATCCT
CTGCTTTTCCATGCCAAGCTGCGCCCAGGAGATCATCGATTTCGTTGCAG
GCCACACGGTGGACGTGGAAGGGGTCGGATCCGTCTGCAGCTACAGCCTC
TTTGACTTTGGGAGGTGCGTGTTG
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