mRNA_S-dermatodea_contig82143.16412.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82143.16412.1
Unique NamemRNA_S-dermatodea_contig82143.16412.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82143.16412.1 vs. uniprot
Match: A0A6H5K1Z1_9PHAE (DHHA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.420e-29
Identity = 72/146 (49.32%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:   10 PLEFGMSSVLCRVDTLAEK---PEAAEAVRAFALERGIDALIVMTTTLDADDNMRKELLVFADSERRCEQMGAFLEGPPGEFLRLQRQQQGQEKEPRPG------GGGFFGGSACSSGRFLRWELGNVAPSRKQVAPSLFSFYESV 420
            PL+FGMSS LCR++TLAEK       +A+R FA+ +G+D+L VMT+TLD + NM+KELL+F  ++ R +QM  +LEG  GEFL L       E    PG      G    G    + G FLRW+L NV  SRKQVAP + SFYESV
Sbjct:  436 PLKFGMSSTLCRLETLAEKGGYEGFGDAMRTFAVSQGVDSLAVMTSTLDEEGNMQKELLIFTHTKLRGDQMREYLEGAHGEFLEL-------EAATPPGTDFGGRGDEVEGSEEGARGWFLRWDLRNVRASRKQVAPVIASFYESV 574
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BLAST of mRNA_S-dermatodea_contig82143.16412.1 vs. uniprot
Match: R1GHF1_BOTPV (Putative exopolyphosphatase protein n=1 Tax=Botryosphaeria parva (strain UCR-NP2) TaxID=1287680 RepID=R1GHF1_BOTPV)

HSP 1 Score: 51.2 bits (121), Expect = 9.410e-5
Identity = 46/137 (33.58%), Postives = 64/137 (46.72%), Query Frame = 1 
Query:   13 LEFGMSSVLCRVDTLAEKPEAA--------EAVRAFALERGIDALIVMTTTLDADDNMRKELLVFADSERRCEQMGAFLEGPPGEFLRLQRQQQGQEKEPRPGGGGFFGGSACSSGRFLRWELGNVAPSRKQVAPSL 399
            ++ G+SSV+  +D L EK +          +A+  FA +R ++   +MT     D   R++LL++A S+R   Q  AF E    E L L      QE E      G F       G    W  GN+A SRKQVAP L
Sbjct:  250 VKLGISSVVKPLDFLQEKAKQERHGDLSFRDALGQFAKQRELEMYAIMTAFTTGDGEFRRQLLLWALSDRAEAQARAFAESATKE-LDL------QELE------GDFHVGGRDQGWKKAWRQGNIAASRKQVAPML 373
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82143.16412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1Z1_9PHAE2.420e-2949.32DHHA2 domain-containing protein n=2 Tax=Ectocarpus... [more]
R1GHF1_BOTPV9.410e-533.58Putative exopolyphosphatase protein n=1 Tax=Botryo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82143contigS-dermatodea_contig82143:187..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D8LQ18
Preferred namePRUNE2
KEGG rclassRC00002
KEGG koko:K01230,ko:K01514,ko:K18449
KEGG ReactionR03409,R05982,R06722
KEGG Pathwayko00230,ko00510,ko00513,ko01100,ko04141,map00230,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0003674,GO:0003824,GO:0004309,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006112,GO:0006793,GO:0006797,GO:0006798,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0015980,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.pyrophosphatase activity
EggNOG OGsCOG1227@1,KOG4129@2759
EC3.2.1.113,3.6.1.11
COG Functional cat.C
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size402
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.1032562-UTR-S-dermatodea_contig82143:186..2101622925329.1032562-UTR-S-dermatodea_contig82143:186..210Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82143 187..210 +
1694079859.1746216-UTR-S-dermatodea_contig82143:186..2101694079859.1746216-UTR-S-dermatodea_contig82143:186..210Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82143 187..210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925329.11661-CDS-S-dermatodea_contig82143:210..6121622925329.11661-CDS-S-dermatodea_contig82143:210..612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82143 211..612 +
1694079859.1869931-CDS-S-dermatodea_contig82143:210..6121694079859.1869931-CDS-S-dermatodea_contig82143:210..612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82143 211..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82143.16412.1prot_S-dermatodea_contig82143.16412.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82143 211..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82143.16412.1

>prot_S-dermatodea_contig82143.16412.1 ID=prot_S-dermatodea_contig82143.16412.1|Name=mRNA_S-dermatodea_contig82143.16412.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp
MSSVLCRVDTLAEKPEAAEAVRAFALERGIDALIVMTTTLDADDNMRKEL
LVFADSERRCEQMGAFLEGPPGEFLRLQRQQQGQEKEPRPGGGGFFGGSA
CSSGRFLRWELGNVAPSRKQVAPSLFSFYESVV*
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mRNA from alignment at S-dermatodea_contig82143:187..612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82143.16412.1 ID=mRNA_S-dermatodea_contig82143.16412.1|Name=mRNA_S-dermatodea_contig82143.16412.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig82143:187..612+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCGACGCGCCGTTGGAGTTCGGTATGAGCTCCGTGCTCTGCCGCGTGGA
CACGCTCGCCGAGAAACCCGAGGCCGCGGAGGCAGTGCGGGCGTTCGCCC
TCGAACGCGGAATCGACGCCCTCATCGTGATGACCACCACGCTCGACGCG
GACGACAATATGAGGAAAGAGCTGCTGGTTTTCGCCGACAGCGAGCGCCG
ATGCGAGCAGATGGGGGCCTTTCTTGAGGGCCCTCCCGGGGAGTTTCTTA
GGCTTCAGCGGCAGCAGCAAGGCCAGGAAAAGGAACCGCGGCCTGGTGGC
GGCGGTTTTTTCGGGGGCAGTGCTTGCAGTAGCGGGAGGTTCTTGCGGTG
GGAGCTGGGGAACGTTGCTCCCTCGAGGAAACAGGTTGCGCCCTCACTGT
TTTCGTTCTACGAGTCTGTGGTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig82143:187..612+

>mRNA_S-dermatodea_contig82143.16412.1 ID=mRNA_S-dermatodea_contig82143.16412.1|Name=mRNA_S-dermatodea_contig82143.16412.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig82143:187..612+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCTCCGTGCTCTGCCGCGTGGACACGCTCGCCGAGAAACCCGAGGC
CGCGGAGGCAGTGCGGGCGTTCGCCCTCGAACGCGGAATCGACGCCCTCA
TCGTGATGACCACCACGCTCGACGCGGACGACAATATGAGGAAAGAGCTG
CTGGTTTTCGCCGACAGCGAGCGCCGATGCGAGCAGATGGGGGCCTTTCT
TGAGGGCCCTCCCGGGGAGTTTCTTAGGCTTCAGCGGCAGCAGCAAGGCC
AGGAAAAGGAACCGCGGCCTGGTGGCGGCGGTTTTTTCGGGGGCAGTGCT
TGCAGTAGCGGGAGGTTCTTGCGGTGGGAGCTGGGGAACGTTGCTCCCTC
GAGGAAACAGGTTGCGCCCTCACTGTTTTCGTTCTACGAGTCTGTGGTGT
GAATGAGCTCCGTGCTCTGCCGCGTGGACACGCTCGCCGAGAAACCCGAG
GCCGCGGAGGCAGTGCGGGCGTTCGCCCTCGAACGCGGAATCGACGCCCT
CATCGTGATGACCACCACGCTCGACGCGGACGACAATATGAGGAAAGAGC
TGCTGGTTTTCGCCGACAGCGAGCGCCGATGCGAGCAGATGGGGGCCTTT
CTTGAGGGCCCTCCCGGGGAGTTTCTTAGGCTTCAGCGGCAGCAGCAAGG
CCAGGAAAAGGAACCGCGGCCTGGTGGCGGCGGTTTTTTCGGGGGCAGTG
CTTGCAGTAGCGGGAGGTTCTTGCGGTGGGAGCTGGGGAACGTTGCTCCC
TCGAGGAAACAGGTTGCGCCCTCACTGTTTTCGTTCTACGAGTCTGTGGT
GTGA
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